Genetically engineered bacteria as inflammatory bowel disease therapeutics.
Zhen-Ping Zou, Xiao-Peng Zhang, Qian Zhang, Bin-Cheng Yin, Ying Zhou, Bang-Ce Ye
Author Information
Zhen-Ping Zou: Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China.
Xiao-Peng Zhang: Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China.
Qian Zhang: Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China.
Bin-Cheng Yin: Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China.
Ying Zhou: Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China.
Bang-Ce Ye: Laboratory of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China.
中文译文
English
Inflammatory bowel disease (IBD) is a chronic and recurrent disease caused by immune response disorders that disrupt the intestinal lumen symbiotic ecosystem and dysregulate mucosal immune functions. Current therapies available for IBD primarily focus on symptom management, making early diagnosis and prompt intervention challenging. The development of genetically engineered bacteria using synthetic biology presents a new strategy for addressing these challenges. In this review, we present recent breakthroughs in the field of engineered bacteria for the treatment and detection of IBD and describe how bacteria can be genetically modified to produce therapeutic molecules or execute diagnostic functions. In particular, we discuss the challenges faced in translating live bacterial therapeutics from bacterial design to delivery strategies for further clinical applications.
J Biol Eng. 2023 Oct 24;17(1):65
[PMID: 37875910 ]
Bioeng Transl Med. 2018 Sep 23;3(3):209-221
[PMID: 30377661 ]
Biotechnol J. 2024 Jan;19(1):e2300327
[PMID: 37800393 ]
Curr Opin Microbiol. 2021 Feb;59:24-33
[PMID: 32828048 ]
Diabetes Res Clin Pract. 2014 Nov;106(2):173-81
[PMID: 25193333 ]
Mater Today Bio. 2022 Sep 15;16:100435
[PMID: 36164505 ]
Adv Drug Deliv Rev. 2022 Aug;187:114364
[PMID: 35654214 ]
Gastroenterology. 2015 Oct;149(5):1275-1285.e2
[PMID: 26166315 ]
Chem Soc Rev. 2023 Oct 2;52(19):6617-6643
[PMID: 37724854 ]
Science. 2022 May 13;376(6594):eabm6038
[PMID: 35549411 ]
Gut. 2022 Dec;71(12):2380-2387
[PMID: 35701092 ]
Front Bioeng Biotechnol. 2022 Sep 26;10:986210
[PMID: 36225597 ]
Nature. 1993 Jun 3;363(6428):446-8
[PMID: 8502296 ]
Nature. 2014 May 15;509(7500):310-7
[PMID: 24828189 ]
Front Bioeng Biotechnol. 2023 Oct 19;11:1267378
[PMID: 37929193 ]
J Clin Invest. 1999 Oct;104(8):1107-14
[PMID: 10525049 ]
Nat Rev Mol Cell Biol. 2003 Sep;4(9):721-32
[PMID: 14506475 ]
ACS Nano. 2021 Apr 27;15(4):7040-7052
[PMID: 33819424 ]
Prim Care. 2023 Sep;50(3):411-427
[PMID: 37516511 ]
ACS Synth Biol. 2018 Jan 19;7(1):166-175
[PMID: 28946740 ]
Nat Rev Gastroenterol Hepatol. 2020 Apr;17(4):223-237
[PMID: 32076145 ]
Drug Discov Today. 2023 Aug;28(8):103667
[PMID: 37302541 ]
J Immunol. 2008 Mar 15;180(6):4265-72
[PMID: 18322239 ]
J Am Chem Soc. 2017 Jul 5;139(26):8828-8836
[PMID: 28573847 ]
Front Immunol. 2017 Jan 25;8:22
[PMID: 28179904 ]
Cell Rep. 2021 Sep 14;36(11):109690
[PMID: 34525358 ]
Gastroenterology. 2014 Jan;146(1):210-221.e13
[PMID: 24120477 ]
Front Microbiol. 2020 Jul 24;11:1662
[PMID: 32793153 ]
Nitric Oxide. 2010 Feb 15;22(2):155-67
[PMID: 20005300 ]
Theranostics. 2017 Aug 15;7(14):3446-3460
[PMID: 28912887 ]
Int Immunopharmacol. 2018 Apr;57:25-32
[PMID: 29455070 ]
Nat Commun. 2020 Jan 7;11(1):95
[PMID: 31911609 ]
Cell Host Microbe. 2023 Apr 12;31(4):634-649.e8
[PMID: 37003258 ]
Nat Protoc. 2020 Feb;15(2):513-539
[PMID: 31925399 ]
Proc Natl Acad Sci U S A. 2023 Aug 8;120(32):e2221121120
[PMID: 37523538 ]
Proc Biol Sci. 2010 Mar 22;277(1683):819-27
[PMID: 19864285 ]
Dig Dis Sci. 1997 May;42(5):1047-54
[PMID: 9149061 ]
Bioeng Transl Med. 2021 Apr 02;6(3):e10219
[PMID: 34589596 ]
Microbiome. 2024 Mar 19;12(1):59
[PMID: 38504383 ]
Nat Rev Gastroenterol Hepatol. 2024 Feb;21(2):84-85
[PMID: 38062188 ]
Biosens Bioelectron. 2013 Feb 15;40(1):368-76
[PMID: 22981411 ]
Nature. 2005 Nov 24;438(7067):441-2
[PMID: 16306980 ]
Folia Biol (Praha). 2012;58(6):238-45
[PMID: 23438849 ]
J Bacteriol. 2009 Oct;191(19):6116-22
[PMID: 19648245 ]
Proc Natl Acad Sci U S A. 2021 May 18;118(20):
[PMID: 33972436 ]
Nature. 2010 Sep 23;467(7314):426-9
[PMID: 20864996 ]
Cells. 2023 Jan 02;12(1):
[PMID: 36611977 ]
Science. 2018 May 25;360(6391):915-918
[PMID: 29798884 ]
Biosens Bioelectron. 2022 Oct 15;214:114520
[PMID: 35797937 ]
Dig Dis Sci. 2020 Mar;65(3):757-788
[PMID: 32006212 ]
Nat Commun. 2023 Dec 18;14(1):8415
[PMID: 38110405 ]
Nature. 2018 Jan 3;553(7686):86-90
[PMID: 29300010 ]
World J Gastroenterol. 2014 Nov 7;20(41):15163-76
[PMID: 25386066 ]
J Gastroenterol. 2012 Dec;47(12):1308-22
[PMID: 22627504 ]
Cell Host Microbe. 2012 Mar 15;11(3):227-39
[PMID: 22423963 ]
Gut Microbes. 2024 Jan-Dec;16(1):2316575
[PMID: 38381494 ]
Adv Mater. 2021 Sep;33(38):e2102580
[PMID: 34347325 ]
Cell Host Microbe. 2023 Feb 8;31(2):199-212.e5
[PMID: 36758520 ]
ACS Synth Biol. 2021 May 21;10(5):911-922
[PMID: 33899477 ]
J Mol Microbiol Biotechnol. 2011;21(3-4):138-46
[PMID: 22286041 ]
Trends Microbiol. 2023 Nov;31(11):1143-1161
[PMID: 37394299 ]
Cell. 2017 Apr 20;169(3):547-558.e15
[PMID: 28431252 ]
Cell. 2022 Aug 18;185(17):3263-3277.e15
[PMID: 35931082 ]
Eur J Clin Invest. 1998 Nov;28(11):904-7
[PMID: 9824433 ]
Front Med (Lausanne). 2020 Jun 12;7:207
[PMID: 32596245 ]
Expert Rev Gastroenterol Hepatol. 2014 Feb;8(2):197-210
[PMID: 24345070 ]
Saudi J Gastroenterol. 2016 Jan-Feb;22(1):3-17
[PMID: 26831601 ]
Science. 2000 Aug 25;289(5483):1352-5
[PMID: 10958782 ]
Nature. 1995 Mar 9;374(6518):168-73
[PMID: 7877689 ]
Am J Gastroenterol. 2009 Feb;104(2):465-83; quiz 464, 484
[PMID: 19174807 ]
Mol Syst Biol. 2017 Apr 3;13(4):923
[PMID: 28373240 ]
Nat Chem Biol. 2019 May;15(5):540-548
[PMID: 30911179 ]
Nat Biomed Eng. 2022 Jan;6(1):94-104
[PMID: 34326488 ]
Cell Syst. 2016 Mar 23;2(3):214
[PMID: 27135367 ]
Nat Commun. 2022 Jun 14;13(1):3432
[PMID: 35701435 ]
Nature. 2018 Oct;562(7727):380-385
[PMID: 30283135 ]
Biosens Bioelectron. 2020 Nov 15;168:112523
[PMID: 32871497 ]
mBio. 2019 Jan 29;10(1):
[PMID: 30696735 ]
United European Gastroenterol J. 2015 Feb;3(1):5-10
[PMID: 25653853 ]
Chemphyschem. 2020 Jan 16;21(2):132-144
[PMID: 31585026 ]
Gut. 2021 Jun;70(6):1174-1182
[PMID: 33272977 ]
N Engl J Med. 2021 Sep 30;385(14):1302-1315
[PMID: 34587387 ]
Enzyme Microb Technol. 2000 Dec;27(10):761-765
[PMID: 11118583 ]
Nat Commun. 2011 Oct 18;2:508
[PMID: 22009040 ]
Lancet Gastroenterol Hepatol. 2021 Dec;6(12):1002-1014
[PMID: 34688373 ]
FEMS Microbiol Lett. 2004 Oct 15;239(2):205-12
[PMID: 15476967 ]
Proc Natl Acad Sci U S A. 2000 May 9;97(10):5440-4
[PMID: 10805800 ]
Inflamm Bowel Dis. 2008 Jul;14(7):1012-8
[PMID: 18240278 ]
Annu Rev Immunol. 2018 Apr 26;36:755-781
[PMID: 29677472 ]
Lancet Gastroenterol Hepatol. 2022 Feb;7(2):171-185
[PMID: 35026171 ]
Gastroenterol Hepatol (N Y). 2016 Mar;12(3):193-6
[PMID: 27231449 ]
Cell. 2017 Apr 20;169(3):538-546.e12
[PMID: 28431251 ]
J Biotechnol. 2013 Oct 20;168(2):120-9
[PMID: 23664884 ]
Nat Commun. 2019 Dec 6;10(1):5580
[PMID: 31811125 ]
Nat Med. 2021 Jul;27(7):1212-1222
[PMID: 34183837 ]
ACS Synth Biol. 2012 Oct 19;1(10):451-7
[PMID: 23656184 ]
ACS Synth Biol. 2023 Nov 17;12(11):3414-3423
[PMID: 37939253 ]
Nat Commun. 2021 Apr 13;12(1):2200
[PMID: 33850130 ]
J Crohns Colitis. 2015 Nov;9(11):945-65
[PMID: 26294789 ]
Nat Commun. 2022 Mar 24;13(1):1585
[PMID: 35332124 ]
ACS Synth Biol. 2020 Sep 18;9(9):2440-2449
[PMID: 32794765 ]
Nat Biotechnol. 2017 Jul;35(7):653-658
[PMID: 28553941 ]
Nat Rev Microbiol. 2022 Apr;20(4):206-218
[PMID: 34773098 ]
STAR Protoc. 2023 Apr 26;4(2):102254
[PMID: 37115666 ]
Appl Microbiol Biotechnol. 2024 May 13;108(1):333
[PMID: 38739270 ]
Gut. 2010 Apr;59(4):461-9
[PMID: 19736360 ]
Mol Ther. 2014 Oct;22(10):1730-40
[PMID: 24985163 ]
Inflamm Bowel Dis. 2011 Sep;17(9):1925-35
[PMID: 21830271 ]
Front Microbiol. 2017 Feb 01;8:114
[PMID: 28203226 ]
Science. 2013 Feb 8;339(6120):708-11
[PMID: 23393266 ]
Infect Immun. 2007 May;75(5):2399-407
[PMID: 17283097 ]
Clin Gastroenterol Hepatol. 2016 Apr;14(4):550-557.e2
[PMID: 26538204 ]
J Microbiol Biotechnol. 2019 Sep 28;29(9):1335-1340
[PMID: 31434172 ]
Semin Immunol. 2021 Feb;52:101425
[PMID: 33272897 ]
Gut. 2018 Jan;67(1):108-119
[PMID: 27802154 ]
Microb Cell Fact. 2015 Nov 25;14:189
[PMID: 26608030 ]
Nat Rev Microbiol. 2018 Apr;16(4):214-225
[PMID: 29398705 ]
Nature. 2008 Oct 9;455(7214):808-12
[PMID: 18716618 ]
Mucosal Immunol. 2010 Jan;3(1):49-56
[PMID: 19794409 ]
Appl Microbiol Biotechnol. 2022 Jan;106(2):505-521
[PMID: 35015145 ]
J Transl Med. 2018 Mar 20;16(1):71
[PMID: 29554971 ]
Nat Commun. 2021 Sep 1;12(1):5216
[PMID: 34471137 ]
Nat Chem Biol. 2017 Jul;13(7):706-708
[PMID: 28530708 ]
Microbiol Spectr. 2017 Oct;5(5):
[PMID: 29052539 ]
Nat Rev Genet. 2018 Nov;19(11):718-732
[PMID: 30237447 ]
ACS Synth Biol. 2019 Sep 20;8(9):2113-2120
[PMID: 31386360 ]
Nat Biotechnol. 2003 Jul;21(7):785-9
[PMID: 12808464 ]
J Bacteriol. 1990 Nov;172(11):6585-8
[PMID: 2228975 ]
Mater Today Bio. 2023 Jan 06;18:100543
[PMID: 36647536 ]
Gut. 2016 Mar;65(3):415-425
[PMID: 26045134 ]
Nature. 2016 Dec 8;540(7632):280-283
[PMID: 27798599 ]
ACS Infect Dis. 2018 Jan 12;4(1):39-45
[PMID: 28918634 ]
Front Microbiol. 2018 Nov 08;9:2692
[PMID: 30467500 ]
Nat Commun. 2022 Aug 2;13(1):4468
[PMID: 35918309 ]
J Immunol. 2024 Jan 15;212(2):208-215
[PMID: 38166246 ]
Exp Biol Med (Maywood). 2012 May;237(5):474-80
[PMID: 22442342 ]
Clin Gastroenterol Hepatol. 2006 Jun;4(6):754-9
[PMID: 16716759 ]
Trends Microbiol. 2023 Nov;31(11):1099-1101
[PMID: 37620240 ]
Curr Opin Biotechnol. 2018 Oct;53:224-231
[PMID: 29550614 ]
Surg Clin North Am. 2019 Dec;99(6):1051-1062
[PMID: 31676047 ]
Cell Mol Immunol. 2021 Oct;18(10):2344-2357
[PMID: 34480146 ]
Metab Eng. 2023 Nov;80:94-106
[PMID: 37717646 ]
PLoS Biol. 2014 Nov 04;12(11):e1001987
[PMID: 25369000 ]
Expert Opin Drug Discov. 2023 Jul-Dec;18(10):1087-1097
[PMID: 37482696 ]
PLoS Pathog. 2011 Jan 06;7(1):e1001248
[PMID: 21253577 ]
Nat Commun. 2016 Jun 03;7:11658
[PMID: 27255669 ]
ACS Biomater Sci Eng. 2023 Sep 11;9(9):5123-5135
[PMID: 36399014 ]
Biomed Pharmacother. 2023 Jan;157:114081
[PMID: 36481399 ]
Front Bioeng Biotechnol. 2020 Mar 31;8:265
[PMID: 32296696 ]
Arthritis Rheum. 2006 Jun;54(6):1856-66
[PMID: 16736523 ]
Nature. 2023 Aug;620(7973):386-392
[PMID: 37495692 ]
Gastroenterology. 2004 Aug;127(2):502-13
[PMID: 15300583 ]
Nat Rev Gastroenterol Hepatol. 2021 Jan;18(1):56-66
[PMID: 33033392 ]
FEMS Microbiol Lett. 2016 Oct;363(19):
[PMID: 27619890 ]
Gastroenterology. 2022 Apr;162(5):1456-1475.e1
[PMID: 35101422 ]
ACS Synth Biol. 2022 Sep 16;11(9):3004-3014
[PMID: 36037444 ]
Eur J Gastroenterol Hepatol. 2021 May 1;33(5):670-679
[PMID: 33741797 ]
Int J Mol Sci. 2018 Jul 31;19(8):
[PMID: 30065229 ]
Lancet Gastroenterol Hepatol. 2023 Apr;8(4):307-320
[PMID: 36738762 ]
Immunity. 2019 Apr 16;50(4):992-1006
[PMID: 30995511 ]
Mol Microbiol. 1999 Apr;32(2):275-87
[PMID: 10231485 ]
Gut. 2021 Oct;70(10):1978-1988
[PMID: 34145045 ]
J Pathol. 1998 Dec;186(4):416-21
[PMID: 10209492 ]
Nat Commun. 2021 May 14;12(1):2805
[PMID: 33990606 ]
Biochem Pharmacol. 2001 Jul 15;62(2):255-9
[PMID: 11389886 ]
Front Bioeng Biotechnol. 2022 Sep 02;10:959441
[PMID: 36118573 ]
Trends Biotechnol. 2019 Jan;37(1):100-115
[PMID: 30318171 ]
Sci Bull (Beijing). 2023 Jun 30;68(12):1231-1234
[PMID: 37258375 ]
Nat Rev Cancer. 2018 Dec;18(12):727-743
[PMID: 30405213 ]
Nat Commun. 2024 Jan 20;15(1):646
[PMID: 38245513 ]
World J Gastroenterol. 2014 Mar 28;20(12):3146-52
[PMID: 24696600 ]
Nat Biotechnol. 2023 Jul;41(7):919-931
[PMID: 36593411 ]
J Bacteriol. 2001 Apr;183(8):2463-75
[PMID: 11274105 ]
Gut. 2000 Mar;46(3):436-9
[PMID: 10673312 ]
J Am Chem Soc. 2012 Oct 31;134(43):18089-100
[PMID: 23082970 ]
Best Pract Res Clin Gastroenterol. 2016 Feb;30(1):55-71
[PMID: 27048897 ]