Optimized gene transduction in human lung organoids: A high-efficiency method for advanced research applications.

Jasmin Khateeb, Jady Liang, Yuchong Li, Thenuka Thanabalasingam, Julie Khang, Mirjana Jerkic, Giovanna Pellecchia, Bhooma Thiruv, Ya-Wen Chen, Ori Rotstein, Arthur S Slutsky, Haibo Zhang
Author Information
  1. Jasmin Khateeb: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada. ORCID
  2. Jady Liang: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.
  3. Yuchong Li: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.
  4. Thenuka Thanabalasingam: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.
  5. Julie Khang: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.
  6. Mirjana Jerkic: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.
  7. Giovanna Pellecchia: Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada. ORCID
  8. Bhooma Thiruv: Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada. ORCID
  9. Ya-Wen Chen: Black Family Stem Cell Institute, Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York city, New York, USA. ORCID
  10. Ori Rotstein: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.
  11. Arthur S Slutsky: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.
  12. Haibo Zhang: Keenan Research Centre for Biomedical Science, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada. haibo.zhang@unityhealth.to. ORCID

Abstract

Human induced pluripotent stem cell (iPSC)-derived lung organoids, engineered to carry targeted genes, offer a robust platform for investigating mechanistic insights in lung research. Although lentiviral vectors (LVVs) are highly effective for stable expression due to their integrative properties, achieving efficient transduction in human iPSC-derived lung organoids poses a significant technical challenge, likely due to the complex structure of these organoids. In this study, we optimized a method to enhance LVV transduction efficiency by physically disrupting the organoids to increase surface area, followed by spinoculation to apply shear force during cell dissociation. This approach, combined with the use of an optimized culture medium, significantly improved transduction efficiency. The success of this method was validated at both the gene and protein levels using single-cell RNA sequencing (scRNA-seq) and various cellular and molecular assays. Our optimized transduction protocol may provide a valuable tool for investigating specific cellular and molecular mechanisms in development and disease models using human iPSCs-derived lung organoids.

References

  1. Sci Rep. 2019 Sep 17;9(1):13450 [PMID: 31530844]
  2. Development. 2023 Jun 1;150(11): [PMID: 37260147]
  3. J Vis Exp. 2015 Apr 20;(98): [PMID: 25938265]
  4. Arch Immunol Ther Exp (Warsz). 2010 Apr;58(2):107-19 [PMID: 20143172]
  5. Virol Sin. 2018 Apr;33(2):142-152 [PMID: 29541943]
  6. Hum Gene Ther. 2013 Feb;24(2):132-42 [PMID: 23311447]
  7. Nat Cell Biol. 2017 May;19(5):542-549 [PMID: 28436965]
  8. Stem Cell Res Ther. 2020 Oct 23;11(1):448 [PMID: 33097094]
  9. Proc Natl Acad Sci U S A. 2005 Feb 22;102(8):2952-7 [PMID: 15703296]
  10. Eur Respir Rev. 2021 Aug 3;30(161): [PMID: 34348980]
  11. Hum Gene Ther. 1993 Dec;4(6):771-80 [PMID: 7514446]
  12. Methods Mol Biol. 2016;1422:13-21 [PMID: 27246018]
  13. Stem Cell Reports. 2018 Jan 9;10(1):101-119 [PMID: 29249664]
  14. Hum Gene Ther. 2020 Sep;31(17-18):921-939 [PMID: 32814451]
  15. Elife. 2021 Oct 06;10: [PMID: 34612202]
  16. Mol Imaging Biol. 2010 Jan-Feb;12(1):15-24 [PMID: 19551446]
  17. Mol Ther. 2003 Dec;8(6):918-26 [PMID: 14664794]
  18. Science. 1999 Dec 17;286(5448):2244-5 [PMID: 10636774]
  19. Nucleic Acids Res. 2014 Oct 29;42(19):e147 [PMID: 25122746]
  20. J Clin Med. 2020 Aug 08;9(8): [PMID: 32784514]
  21. Mol Ther. 2010 Jan;18(1):80-6 [PMID: 19904234]
  22. Stem Cells. 2010 Oct;28(10):1728-40 [PMID: 20715179]
  23. Methods Mol Biol. 2011;767:67-85 [PMID: 21822868]
  24. Nat Biotechnol. 2014 Jan;32(1):84-91 [PMID: 24291815]
  25. Nature. 2014 Dec 18;516(7531):400-4 [PMID: 25363776]
  26. EMBO J. 2021 Mar 1;40(5):e107651 [PMID: 33576058]
  27. Mol Ther. 2000 Nov;2(5):420-1 [PMID: 11082315]
  28. Nat Protoc. 2019 Dec;14(12):3303-3332 [PMID: 31732721]
  29. J Virol. 2011 Oct;85(19):9824-33 [PMID: 21795326]
  30. Cancer Res. 2020 Jul 1;80(13):2804-2817 [PMID: 32376602]
  31. Curr Protoc Mouse Biol. 2012 Sep 1;2:245-262 [PMID: 23024927]
  32. Development. 2017 Mar 15;144(6):986-997 [PMID: 28292845]
  33. EMBO J. 2022 Nov 2;41(21):e111338 [PMID: 36121125]
  34. J Virol Methods. 1995 Aug;54(2-3):131-43 [PMID: 8530565]
  35. Nat Protoc. 2015 Mar;10(3):363-81 [PMID: 25654755]
  36. J Biomed Biotechnol. 2009;2009:901079 [PMID: 19478961]
  37. Am J Respir Cell Mol Biol. 2013 Sep;49(3):341-7 [PMID: 23713995]
  38. Nat Methods. 2011 Dec 04;9(1):81-3 [PMID: 22138822]
  39. J Vis Exp. 2019 May 10;(147): [PMID: 31132065]
  40. Elife. 2015 Mar 24;4: [PMID: 25803487]

Grants

  1. PJT 190130/Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada)

MeSH Term

Humans
Organoids
Lung
Induced Pluripotent Stem Cells
Lentivirus
Transduction, Genetic
Genetic Vectors

Word Cloud

Created with Highcharts 10.0.0lungorganoidstransductionhumanoptimizedmethodcellinvestigatingresearchdueefficiencygeneusingcellularmolecularHumaninducedpluripotentstemiPSC-derivedengineeredcarrytargetedgenesofferrobustplatformmechanisticinsightsAlthoughlentiviralvectorsLVVshighlyeffectivestableexpressionintegrativepropertiesachievingefficientiPSC-derivedposessignificanttechnicalchallengelikelycomplexstructurestudyenhanceLVVphysicallydisruptingincreasesurfaceareafollowedspinoculationapplyshearforcedissociationapproachcombineduseculturemediumsignificantlyimprovedsuccessvalidatedproteinlevelssingle-cellRNAsequencingscRNA-seqvariousassaysprotocolmayprovidevaluabletoolspecificmechanismsdevelopmentdiseasemodelsiPSCs-derivedOptimizedorganoids:high-efficiencyadvancedapplications

Similar Articles

Cited By