Transcriptomic Analysis Reveals Patterns of Expression of Stage-Specific Genes in Early Embryos.

Runlang Su, Yuhui Chen, Rui Zhu, Guiling Ding, Kun Dong, Mao Feng, Jiaxing Huang
Author Information
  1. Runlang Su: College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
  2. Yuhui Chen: State Key Laboratory of Resource Insects, Chinese Academy of Agricultural Sciences, Beijing 100093, China.
  3. Rui Zhu: State Key Laboratory of Resource Insects, Chinese Academy of Agricultural Sciences, Beijing 100093, China.
  4. Guiling Ding: State Key Laboratory of Resource Insects, Chinese Academy of Agricultural Sciences, Beijing 100093, China.
  5. Kun Dong: College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
  6. Mao Feng: State Key Laboratory of Resource Insects, Chinese Academy of Agricultural Sciences, Beijing 100093, China.
  7. Jiaxing Huang: College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China. ORCID

Abstract

BACKGROUND/OBJECTIVES: development is described as comprising four stages: embryo, larva, pupa, and adult. There are significant differences between workers and drones in terms of physiological functions and social roles, and the formation of the organ primordia occurs during the embryonic stage. Therefore, the objective of this study is to investigate the differential expression of and alternative splicing of genes in worker and drone embryos and to explain their unique developmental patterns.
METHODS: Long-read sequencing (PacBio Iso-Seq) and short-read sequencing (Illumina RNA-Seq) were used to investigate worker and drone embryo gene expression differences in across five developmental points (12, 24, 36, 48, and 60 h).
RESULTS: The study identified 59,254 common isoforms, with 5744 and 5106 isoforms specific to worker and drone embryos, respectively. Additionally, a new transcript of the gene was identified. The number of differentially expressed genes (3391) and differential splicing events (470 genes) peaked at the 24-h embryonic stage. Differential splicing events of , , and were observed in the worker and drone embryos.
CONCLUSIONS: The gene expression results indicated that the 24-h embryonic point is a critical period for the expression of genes related to developmental and behavioral differences between workers and drones. The findings provide a theoretical basis for future research on the developmental differences between workers and drones.

Keywords

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Grants

  1. 2022YFD1600205/National Key R&D Program of China

MeSH Term

Animals
Bees
Gene Expression Regulation, Developmental
Alternative Splicing
Transcriptome
Gene Expression Profiling
Embryo, Nonmammalian
Insect Proteins

Chemicals

Insect Proteins

Word Cloud

Created with Highcharts 10.0.0workerdronedifferencesembryonicexpressiongenesdevelopmentalworkersdronessplicingembryosgeneembryostagestudyinvestigatedifferentialsequencingidentifiedisoformsevents24-hBACKGROUND/OBJECTIVES:developmentdescribedcomprisingfourstages:larvapupaadultsignificanttermsphysiologicalfunctionssocialrolesformationorganprimordiaoccursThereforeobjectivealternativeexplainuniquepatternsMETHODS:Long-readPacBioIso-Seqshort-readIlluminaRNA-Sequsedacrossfivepoints1224364860hRESULTS:59254common57445106specificrespectivelyAdditionallynewtranscriptnumberdifferentiallyexpressed3391470peakedDifferentialobservedCONCLUSIONS:resultsindicatedpointcriticalperiodrelatedbehavioralfindingsprovidetheoreticalbasisfutureresearchTranscriptomicAnalysisRevealsPatternsExpressionStage-SpecificGenesEarlyEmbryosAceranatranscriptomeshoneybees

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