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Found 48,866 results

Filters: Gene annotation

Hayai-Annotation Plants: an ultra-fast and comprehensive gene annotation system in plants
Ghelfi, A.; Shirasawa, K.; Hirakawa, H.; Isobe, S.
biorxiv. 2018-11-20. Preprint
Source:biorxiv
PPRID: 10.1101/473488v1 doi:10.1093/bioinformatics/btz380
Benchmarking Hayai-Annotation Plants: A Re-evaluation Using Standard Evaluation Metrics
Ghelfi, A.; Shirasawa, K.; Isobe, S.
biorxiv. 2023-09-12. Preprint
Source:biorxiv
PPRID: 10.1101/2023.09.08.556781v1 doi:NA
Annotation Extensions.
Rachael P Huntley, Ruth C Lovering
Methods Mol Biol. 2017.1446:233-243 Print
Source:PubMed
PMID: 27812947 doi:10.1007/978-1-4939-3743-1_17
Using Machine Learning and Gene Nonhomology Features to Predict Gene Ontology
Dai, X.; Xu, Z.; Liang, Z.; Tu, X.; Zhong, S.; Schnable, J. C.; Li, P.
biorxiv. 2019-08-09. Preprint
Source:biorxiv
PPRID: 10.1101/730473v1 doi:NA
GFAP: ultra-fast and accurate gene functional annotation software for plants
Xu, D.; Jin, K.; Jiang, H.; Gong, D.; Yang, J.; Yu, W.; Yang, Y.; Li, J.; Pan, W.
biorxiv. 2022-01-06. Preprint
Source:biorxiv
PPRID: 10.1101/2022.01.05.475154v1 doi:NA
Term Matrix: A novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns
Wood, V.; Carbon, S.; Harris, M. A.; Lock, A.; Engel, S. R.; Hill, D. P.; Van Auken, K.; Attrill, H.; Feuermann, M.; Gaudet, P.; Lovering, R. C.; Poux, S.; Rutherford, K. M.; Mungall, C. J.
biorxiv. 2020-04-23. Preprint
Source:biorxiv
PPRID: 10.1101/2020.04.21.045195v1 doi:10.1098/rsob.200149
Plant genome annotation methods.
Shu Ouyang, Françoise Thibaud-Nissen, Kevin L Childs, Wei Zhu, C Robin Buell
Methods Mol Biol. 2009.513:263-82 Print
Source:PubMed
PMID: 19347655 doi:10.1007/978-1-59745-427-8_14
iCAZyGFADB: an insect CAZyme and gene function annotation database.
Chun Fu, YaoJun Yang
Database (Oxford). 11 28, 2023.2023: Print
Source:PubMed
PMID: 38015957 doi:10.1093/database/baad086
Non-Homology-Based Prediction of Gene Functions
Dai, X.; Xu, Z.; Liang, Z.; Tu, X.; Zhong, S.; Schnable, J. C.; Li, P.
biorxiv. 2019-12-22. Preprint
Source:biorxiv
PPRID: 10.1101/730473v2 doi:NA
Impact of gene annotation choice on the quantification of RNA-seq data
Chisanga, D.; Liao, Y.; Shi, W.
biorxiv. 2021-01-08. Preprint
Source:biorxiv
PPRID: 10.1101/2021.01.07.425794v1 doi:NA
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