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Found 96 results

Filters: GeoMx DSP

standR: a Bioconductor package for analysing transcriptomic Nanostring GeoMx DSP data
Liu, N.; Bhuva, D. D.; Mohamed, A.; Bokelund, M.; Kulasinghe, A.; Tan, C. W.; Davis, M. J.
biorxiv. 2023-04-24. Preprint
Source:biorxiv
PPRID: 10.1101/2023.04.23.538017v1 doi:NA
A user's perspective on GeoMx digital spatial profiling.
Trieu My Van, Christian U Blank
Immunooncol Technol. Jul, 2019.1:11-18 Electronic-eCollection
Source:PubMed
PMID: 35755324 doi:10.1016/j.iotech.2019.05.001
Integrating Tissue Microarray to GeoMx Digital Spatial Profiler : Spatial Transcriptomics Assay with Bioinformatics Analysis.
Deshica Dechamma, Manju Moorthy, Vijayalakshmi Bhat, Gopalakrishna Ramaswamy
Methods Mol Biol. 2025.2880:193-209 Print
Source:PubMed
PMID: 39900760 doi:10.1007/978-1-0716-4276-4_9
Feasibility Study Utilizing NanoString Digital Spatial Profiling (DSP) Technology for Characterizing the Immune Microenvironment in Barrett's Esophagus FFPE Tissues
Ain, Q. u.; Frei, N.; Khoshiwal, A. M.; Stougie, P.; Odze, R.; Ferri, L.; Duits, L. C.; Bergman, J.; Stachler, M. D.
biorxiv. 2023-11-02. Preprint
Source:biorxiv
PPRID: 10.1101/2023.11.02.565001v1 doi:NA
standR: spatial transcriptomic analysis for GeoMx DSP data.
Ning Liu, Dharmesh D Bhuva, Ahmed Mohamed, Micah Bokelund, Arutha Kulasinghe, Chin Wee Tan, Melissa J Davis
Nucleic Acids Res. Jan 11, 2024.52(1):e2 Print
Source:PubMed
PMID: 37953397 doi:10.1093/nar/gkad1026
Background modeling, Quality Control and Normalization for GeoMx RNA data with GeoDiff
Yang, L.; Yang, Z.; Danaher, P.; Zimmerman, S.; Hether, T.; Henderson, D. A.; Beechem, J. M.
biorxiv. 2022-05-29. Preprint
Source:biorxiv
PPRID: 10.1101/2022.05.26.493637v1 doi:NA
Alternative normalization and analysis pipeline to address systematic bias in NanoString GeoMx Digital Spatial Profiling data.
Levi van Hijfte, Marjolein Geurts, Wies R Vallentgoed, Paul H C Eilers, Peter A E Sillevis Smitt, Reno Debets, Pim J French
iScience. Jan 20, 2023.26(1):105760 Electronic-eCollection
Source:PubMed
PMID: 36590163 doi:10.1016/j.isci.2022.105760
GeoMx™ RNA Assay: High Multiplex, Digital, Spatial Analysis of RNA in FFPE Tissue.
Daniel R Zollinger, Stan E Lingle, Kristina Sorg, Joseph M Beechem, Christopher R Merritt
Methods Mol Biol. 2020.2148:331-345 Print
Source:PubMed
PMID: 32394392 doi:10.1007/978-1-0716-0623-0_21
Quantitative RNA assessment and long-term stability in the FFPE tumor samples using Digital Spatial Profiler.
S Gupta, T Chen, B Destenaves
Immunooncol Technol. Mar, 2022.13:100069 Electronic-eCollection
Source:PubMed
PMID: 35754852 doi:10.1016/j.iotech.2021.100069
High multiplex analysis of the immune microenvironment in bone marrow trephine samples using GeoMX™ digital spatial profiling.
R M Koldej, D S Ritchie
Immunooncol Technol. Mar, 2020.5:1-9 Electronic-eCollection
Source:PubMed
PMID: 35756143 doi:10.1016/j.iotech.2020.02.001
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