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Found 874 results

Filters: ddRAD

Variant calling and genotyping accuracy of ddRAD-seq: comparison with 20X WGS in layers
Doublet, M.; Degalez, F.; Lagarrigue, S.; Lagoutte, L.; Gueret, E.; Allais, S.; Lecerf, F.
biorxiv. 2024-01-31. Preprint
Source:biorxiv
PPRID: 10.1101/2024.01.29.577880v1 doi:NA
Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification
Magbanua, Z. V.; Hsu, C.-y.; Pechanova, O.; Arick, M.; Grover, C. E.; Peterson, D. G.
biorxiv. 2022-09-07. Preprint
Source:biorxiv
PPRID: 10.1101/2022.09.06.506835v1 doi:NA
Linkage mapping and QTL analysis of flowering time using ddRAD sequencing with genotype error correction in Brassica napus
Scheben, A.; Severn-Ellis, A.; Patel, D.; Pradhan, A.; Rae, S.; Batley, J.; Edwards, D.
biorxiv. 2020-06-26. Preprint
Source:biorxiv
PPRID: 10.1101/2020.06.26.162966v1 doi:10.1186/s12870-020-02756-y
Linkage mapping and QTL analysis of flowering time using ddRAD sequencing with genotype error correction in Brassica napus
Scheben, A.; Severn-Ellis, A.; Patel, D.; Pradhan, A.; Rae, S.; Batley, J.; Edwards, D.
biorxiv. 2020-07-05. Preprint
Source:biorxiv
PPRID: 10.1101/2020.06.26.162966v2 doi:10.1186/s12870-020-02756-y
Delimiting Continuity: Comparison of Target Enrichment and ddRAD for Delineating Admixing Parapatric Melitaea Butterflies
Joshi, M.; Espeland, M.; Dinca, V. E.; Vila, R.; Tahami, M. S.; Dietz, L.; Mayer, C.; Martin, S.; Dapporto, L.; Mutanen, M.
biorxiv. 2022-02-06. Preprint
Source:biorxiv
PPRID: 10.1101/2022.02.05.479083v1 doi:NA
Detection and removal of PCR duplicates in population genomic ddRAD studies by addition of a degenerate base region (DBR) in sequencing adapters.
Hannah Schweyen, Andrey Rozenberg, Florian Leese
Biol Bull. Oct, 2014.227(2):146-60 Print
Source:PubMed
PMID: 25411373 doi:10.1086/BBLv227n2p146
Using ddRAD-seq phylogeography to test for genetic effects of headwater river capture in suckermouth armored catfish (Loricariidae: Hypostomus) from the central Brazilian Shield
Bagley, J. C.; de Aquino, P. D. P. U.; Hrbek, T.; Hernandez-Rangel, S.; Langeani, F.; Colli, G. R.
biorxiv. 2021-04-20. Preprint
Source:biorxiv
PPRID: 10.1101/2021.04.18.440224v1 doi:NA
The ability of ddRAD-Seq to estimate genetic diversity and genetic introgression in endangered native livestock
Tezuka, A.; Takasu, M.; Tozaki, T.; Nagano, A. J.
biorxiv. 2018-11-01. Preprint
Source:biorxiv
PPRID: 10.1101/454108v1 doi:NA
Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants.
Guo-Qian Yang, Yun-Mei Chen, Jin-Peng Wang, Cen Guo, Lei Zhao, Xiao-Yan Wang, Ying Guo, Li Li, De-Zhu Li, Zhen-Hua Guo
Plant Methods. 2016.12:39 Electronic-eCollection
Source:PubMed
PMID: 27493679 doi:10.1186/s13007-016-0139-1
ddRAD-seq data reveal significant genome-wide population structure and divergent genomic regions that distinguish the mallard and close relatives in North America.
Philip Lavretsky, Jeffrey M DaCosta, Michael D Sorenson, Kevin G McCracken, Jeffrey L Peters
Mol Ecol. 05, 2019.28(10):2594-2609 Print-Electronic
Source:PubMed
PMID: 30941840 doi:10.1111/mec.15091
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