Summary
P10K-NCBI-001131 | Cryptosporidium parvum
Taxonomy: Alveolata;P_Apicomplexa;C_Conoidasida;O_Eucoccidiorida;F_Cryptosporidiidae;G_Cryptosporidium;S_Cryptosporidium parvum
Description: {{sample.description}}
Assembly ID: {{assembly.assemblyId}}
Assembly ID: {{assembly.assemblyId}}
Data Download
Genome Assembly Genome Annotation Protein Sequences CDS SequencesSample Information
Feature
Biotic Relationship: {{sample.bioticRelationship}}
Extreme Environment: {{sample.extremeEnvironments}}
Cell Arrangement: {{sample.cellArrangement}}
Cell Shape: {{sample.cellShape}}
Colony Color: {{sample.colonyColor}}
Energy Source: {{sample.energySource}}
Habitat: {{sample.habit}}
Oxygen: {{sample.oxygen}}
Collection Method: {{sample.collectionMethod}}
Collection Date: {{sample.collectionDate}}
Storage Method: {{sample.storageMethod}}
Geo Information
Latitude: {{sample.latitude == -1 ? "NA" :
sample.latitude.toFixed(2)}}
Longitude: {{sample.longitude == -1 ? "NA" :
sample.longitude.toFixed(2)}}
Elevation: {{sample.elevation == -1 ? "NA" :
sample.elevation.toFixed(2)}}
Location: {{sample.geoLocation == -1 ? "NA" :
sample.geoLocation}}
Contact Information
Sample Provider: {{sample.sampleProvider}}
Contact Email: {{sample.contactEmail}}
Originating Lab: {{sample.originatingLab}}
Genome
Assembly ID: {{assembly.assemblyId}}
Assembly ID: {{assembly.assemblyId}}
Assembly Method: {{assembly.assemblyMethod}}
Genome Size (MB): {{assembly.totalSize == -1 ? 'NA':
assembly.totalSize.toFixed(2)}}
N50: {{(assembly.scaffoldn50 == -1 || assembly.scaffoldn50 ==
null) ? 'NA': assembly.scaffoldn50}}
Gene
Number: {{annotation.geneNumber}}
Completeness (%): {{(assembly.completeness== -1 ||
assembly.completeness == null) ? 'NA' : assembly.completeness.toFixed(2)}}
Sequencing
| Sequencing ID | Raw Data | Open | Insert Size (bp) | Read Length (bp) | Reads GC(%) | Total Base (Gb) | Sequencing Platform | Sequencing Strategy | Publication | |
|---|---|---|---|---|---|---|---|---|---|---|
| {{s.sequencingId}} | {{s.open}} | {{s.insertSize == -1 ? 'NA':s.insertSize}} | {{s.readLength == -1 ? 'NA':s.readLength}} | {{s.readsGc == -1 ? 'NA':s.readsGc}} | {{s.totalBase == -1 || s.totalBase == null ? 'NA':s.totalBase.toFixed(2)}} | {{s.sequencingPlatform}} | {{s.sequencingStrategy}} | {{s.publication}} | NA |
