Home - The SugarCane multi-Omics Database (SugarcaneOmics)

SugarcaneOmics constitutes a comprehensive multidimensional omics knowledgebase encompassing sugarcane and its close relatives. This platform serves as an integrative repository of multilayered omics data tailored for genetic researchers and crop improvement specialists, strategically engineered to underpin next-generation precision breeding paradigms ("Breeding 4.0").

e.g., Chr10A:4000-6000; Npp.10A000010.1; IPA1; BAG6; Sucrose synthase;

Genome assemblies, annotated genes, pan-genomes of sugarcane and related species.

14 Genome assemblies

1668639 Annotated genes

34893 Pan-gene clusters

Transcriptome for bulk RNA-seq from different organ-stage samples

48 Transcriptome projects

1256 Bulk RNA-seq samples

Gene expression pattern

Variome of 322 sugarcane varieties, including SNPs and small INDELs

322 Sugarcane accessions

145307799 SNPs

30900071 Small InDels

Functional genes obtained through bioinformatics analysis or bio-curation.

105963 Transcription factors

5 Curated pathway

1158 Curated functional genes

Sugarcane germplasm resources were collected around the word.

1096 Sugarcane accessions

Global distribution

Omics-data information

Useful tools for data analysis and visualization.

BLAST

SeqFetch

GO Enrichment

KEGG Enrichment

CRIOff

PrimerServer

PIN Miner

Visualization

Resources

News

KEGG/GO enrichment toolkits were online. (2025/03/01) CRIOff, a tool to predict CRISPR off-target sites, is online. (2025/02/07) Online tools 'SeqFetch', 'GO Entrichment', 'PremerServer' are availabe. (2025/02/05) Gene-based Pan-genome of 10 assembly was newly online. (2024/12/05) Transcriptome of 1336 samples from 49 projects was online. (2024/11/30) More...

Related Database

Genome Sequence Archive (GSA) Genome Warehouse (GWH) Genome Variation Map (GVM) Open Plant Image Archive (OPIA) Tropical Crop Omics Database (TCOD) GWAS Atlas

Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation

Institute of Microbiology, Chinese Academy of Science

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Supported by the Strategic Priority Research Program of the Chinese Academy of Sciences, Grant No. XDA0450000.