SugarcaneOmics
The SugarCane multi-Omics Database

SugarcaneOmics
The SugarCane multi-Omics Database

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Home
Genome
Genome Genes Pan-Gene
Transcriptome
Dataset ExpProfile DegPattern
Variome
FeatureGenes
Transcription Factor Functional Genes
Varieties
Tools
BLAST
BLASTN BLASTP BLASTX TBLASTN
SeqFetch GO Enrichment KEGG Enrichment CRIOff PrimerServer PIN Miner Visualization
Downloads
About
Documentation Statistics News About Us
Home
Pan-Gene
Pan-Gene clusters were analysed by OrthFinder, where 7 Saccharum genomes were used for grouping, 3 Erianthus, 1 Miscanthus, 1 Sorghum bicolor genomes were used as outgroup, and Oryza sativa, Zea mays, Arabidopsis thaliana were used for annotation.
Saccharum Pan-Gene Cluster:
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GroupID Symbol Description Genome Frequency Cluster Type # Total Gene Number of Gene in Each Species
S. officinarum S. spontaneum S. hybrid cultivar E. fulvus E. rufipilus E. rockii M. lutarioriparius S. bicolor
LA-purple Np-X AP85-441 CC-01-1940 XTT22 R570 ZZ1 Ness Yunnan 2009-3 YN83-224 Honghu_Lake No.8 BTx623
Gene ID Species Genomic Location Function TF