SugarcaneOmics
The SugarCane multi-Omics Database
SugarcaneOmics
The SugarCane multi-Omics Database
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Pan-Gene
Transcriptome
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ExpProfile
DegPattern
Variome
FeatureGenes
Transcription Factor
Functional Genes
Varieties
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BLASTN
BLASTP
BLASTX
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Home
Genome
Genome
Genes
Pan-Gene
Transcriptome
Dataset
ExpProfile
DegPattern
Variome
FeatureGenes
Transcription Factor
Functional Genes
Varieties
Tools
BLAST
BLASTN
BLASTP
BLASTX
TBLASTN
SeqFetch
GO Enrichment
KEGG Enrichment
CRIOff
PrimerServer
PIN Miner
Visualization
Downloads
About
Documentation
Statistics
News
About Us
Home
Transcriptome
Differential Expression
Differentially expressed gene analysis was performed within each RNA-Seq project, where multiple group comparisons were made according to sample categories.
Parameter setting
Project selection:
Project (Dataset)
Select Dataset
 
Projects
Comparison parameters:
Case (Group A)
Select Group A
Control (Group B)
Select Group B
Analysis Tools
DESeq2
edgeR
limma
q
-value ≤
|log2(FoldChange)| ≥
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Information of compared samples
Group
Sample name
Accession
Species
Cultivar
Tissue
Sampling condition
Traits
Development Stage
Volcano plot
Up-regulated genes
GeneID
log2FC
p-value
q-value
Down-regulated genes
Gene ID
log2FC
p-value
q-value
Project List
Dataset ID
Project
Species
Cultivar
Tissue
Treatment
Phenotype in original study