SugarcaneOmics
The SugarCane multi-Omics Database

SugarcaneOmics
The SugarCane multi-Omics Database

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Genome
Genome Genes Pan-Gene
Transcriptome
Dataset ExpProfileDegPattern
Variome
FeatureGenes
Transcription Factor Functional Genes
Varieties
Tools
BLAST
BLASTN BLASTP BLASTX TBLASTN
SeqFetch GO Enrichment KEGG Enrichment CRIOff PrimerServer PIN Miner Visualization
Downloads
About
Documentation Statistics News About Us
Home
Genome
Genome Genes Pan-Gene
Transcriptome
Dataset ExpProfile DegPattern
Variome
FeatureGenes
Transcription Factor Functional Genes
Varieties
Tools
BLAST
BLASTN BLASTP BLASTX TBLASTN
SeqFetch GO Enrichment KEGG Enrichment CRIOff PrimerServer PIN Miner Visualization
Downloads
About
Documentation Statistics News About Us
Home
Variome

These module contains 145,307,799 SNPs and 30,900,071 small InDels from 322 sugarcane accessions. Variation calling follows the standards in GVM (https://ngdc.cncb.ac.cn/gvm/standards), and is implemented using the GATK toolkits. S. spontaneum Np-X is used as the reference sequence.

Statistics
Selective Test
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Variation Browser

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Position and Type
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Consequence Type
Frequency
VarID Chr Position Type Ref Alt MAF Consequence