Variation ID : sbi1149

Variation Detail



Variation ID sbi1149
Type SNP
Position Chr01 15061-15061
Ref /Alleles C/ A or T
MAF C: 0.424
5' Flank TAAACTAAAAATATACAGATCACATAATAA
3' Flank ATAACAATACTGTAAAATTAAATAACGATG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved T|T
2 103 Improved T|T
3 107 Improved T|T
4 11 Improved T|T
5 110 Improved N|N
6 123 Landrace T|T
7 131 Improved C|C
8 132 Improved T|T
9 135 Improved N|N
10 137 Improved C|C
11 138 Improved C|C
12 14 Improved N|N
13 140 Improved C|C
14 141 Improved T|T
15 144 Improved T|T
16 150 Improved T|T
17 154 Improved T|T
18 159 Landrace T|T
19 16 Improved C|C
20 161 Landrace C|C
21 167 Improved C|C
22 168 Improved C|C
23 170 Improved C|C
24 173 Improved T|T
25 175 Improved T|T
26 176 Improved C|C
27 182 Landrace T|T
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved C|C
31 194 Improved N|N
32 195 Improved T|T
33 197 Improved N|N
34 J22 Landrace T|T
35 J26 Landrace C|C
36 J5 Landrace T|T
37 J50 Landrace C|C
38 2001 Landrace N|N
39 2005 Improved T|T
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace T|T
44 2016 Improved N|N
45 2019 Improved C|C
46 202 Improved C|C
47 2021 Improved N|N
48 2023 Improved N|N
49 2026 Improved C|C
50 2029 Improved T|T
51 2030 Landrace T|T
52 2031 Landrace C|C
53 2036 Improved C|C
54 2037 Improved T|T
55 2038 Improved N|N
56 2039 Improved T|T
57 204 Improved C|C
58 2042 Improved N|N
59 2043 Improved T|T
60 2048 Improved T|T
61 2049 Improved N|N
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved C|C
65 2054 Improved T|T
66 2056 Improved C|C
67 2059 Improved T|T
68 206 Improved C|C
69 2064 Improved N|N
70 2065 Improved C|C
71 2067 Improved T|T
72 2068 Improved N|N
73 2069 Improved T|T
74 2071 Improved T|T
75 2074 Improved N|N
76 2075 Improved C|C
77 2076 Improved C|C
78 2080 Improved N|N
79 2081 Improved C|C
80 2082 Improved T|T
81 2086 Improved T|T
82 2088 Improved C|C
83 260 Wild sorghum N|N
84 261 Improved C|C
85 262 Improved T|T
86 263 Improved C|C
87 286 Improved C|C
88 29 Improved T|T
89 3 Improved C|C
90 302546 S.propinquum N|N
91 31 Improved C|T
92 32 Improved C|C
93 34 Improved T|T
94 346 Landrace C|C
95 348 Wild sorghum T|T
96 353 Wild sorghum T|T
97 355 Wild sorghum T|T
98 357 Wild sorghum T|T
99 364 Wild sorghum N|N
100 367 Landrace C|C
101 s37 S.propinquum A|A
102 s38 S.propinquum A|A
103 370 Landrace T|T
104 377 Wild sorghum T|T
105 392 Wild sorghum T|T
106 394 Wild sorghum N|N
107 40 Improved C|C
108 42 Improved N|N
109 43 Improved C|T
110 45 Improved T|T
111 47 Improved C|C
112 48 Improved T|T
113 51 Improved T|T
114 53 Improved T|T
115 56 Improved C|C
116 61 Improved C|C
117 62 Improved C|C
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved C|C
121 70 Improved N|N
122 73 Improved C|C
123 75 Improved C|C
124 88 Improved T|T
125 89 Improved N|N
126 91 Improved C|T
127 92 Improved T|T
128 93 Improved T|T
129 94 Improved T|T
130 95 Improved T|T
131 96 Improved T|T
132 97 Improved N|N
133 s1 Improved C|C
134 s36 Wild sorghum T|T
135 s2 Landrace C|C
136 s3 Improved C|C
137 s32 Improved C|C
138 s43 Weedy C|C
139 s40 Landrace T|T
140 s41 Weedy T|T
141 s39 Landrace C|T
142 s42 Landrace T|T
143 s47 Improved C|C
144 s5 Landrace T|T
145 GW102 Landrace C|C
146 GW103 Landrace T|T
147 GW104 Landrace C|C
148 GW105 Landrace T|T
149 GW16 Landrace T|T
150 GW2 Landrace C|C
151 GW34 Landrace T|T
152 GW37 Landrace T|T
153 GW58 Landrace T|T
154 GW59 Landrace T|T
155 GW9 Landrace T|T
156 s4 Weedy T|T
157 s6 Improved C|C
158 s7 Landrace T|T
159 s8 Landrace C|C
160 s9 Landrace C|C
161 J101 Landrace T|T
162 J103 Improved C|C
163 J112 Landrace T|T
164 J113 Improved T|T
165 J129 Improved C|C
166 J130 Improved C|C
167 J136 Improved C|C
168 J152 Improved C|C
169 J2 Landrace C|C
170 J20 Landrace C|C
171 J4 Landrace C|C
172 J42 Landrace N|N
173 J44 Landrace C|C
174 J49 Landrace T|T
175 J52 Landrace C|C
176 J53 Landrace T|T
177 J54 Landrace T|T
178 J57 Landrace C|C
179 J59 Landrace C|C
180 J64 Landrace C|C
181 J66 Landrace C|C
182 J67 Landrace C|C
183 J69 Landrace C|C
184 J87 Landrace T|T
185 J99 Landrace C|C
186 s45 Landrace C|C
187 s11 Improved T|T
188 s10 Improved C|C
189 s46 Improved C|C
190 s12 Improved C|C
191 s13 Landrace C|C
192 MHMD Landrace N|N
193 s14 Improved C|C
194 s15 Improved C|C
195 s34 Weedy T|T
196 s33 Wild sorghum T|T
197 s21 Wild sorghum C|C
198 s16 Wild sorghum T|T
199 s44 Improved C|C
200 s35 Landrace T|T
201 s31 Wild sorghum T|T
202 s17 Improved C|C
203 s18 Improved C|C
204 s20 Improved C|C
205 s19 Improved C|C
206 s22 Landrace T|T
207 s23 Landrace T|T
208 s24 Landrace T|T
209 s25 Landrace C|C
210 s26 Landrace T|T
211 s27 Landrace T|T
212 s28 Landrace C|C
213 s29 Landrace T|T
214 s30 Landrace C|C
215 SL25 Wild sorghum T|T
216 SL105 Wild sorghum T|T
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum T|T
219 SL12 Wild sorghum T|T
220 SL129 Wild sorghum T|T
221 SL130 Wild sorghum T|T
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum T|T
224 SL137 Wild sorghum T|T
225 SL138 Wild sorghum T|T
226 SL140 Wild sorghum N|N
227 SL141 Wild sorghum T|T
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum T|T
230 SL32 Wild sorghum A|A
231 SL35 Wild sorghum T|T
232 SL36 Wild sorghum T|T
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum C|C
235 SL41 Wild sorghum T|T
236 SL43 Wild sorghum T|T
237 SL47 Wild sorghum T|T
238 SL49 Wild sorghum T|T
239 SL51 Wild sorghum T|T
240 SL53 Wild sorghum T|T
241 SL62 Wild sorghum T|T
242 SL83 Wild sorghum T|T
243 SL97 Landrace T|T
244 s48 Improved C|T
245 Tu13 Wild sorghum T|T
246 Tu14 Wild sorghum T|T
247 Tu30 Wild sorghum T|T
248 Tu5 Wild sorghum T|T
249 WSC5 Landrace T|T
250 WSC15 Landrace T|T
251 WSC19 Landrace C|C
252 WSC30 Landrace N|N
253 WSC52 Landrace T|T
254 WSC6 Landrace T|T
255 WSC61 Landrace C|C
256 WSC71 Improved C|C
257 WSC72 Landrace C|C
258 WSC79 Landrace N|N
259 WSC94 Landrace C|C
260 WSC99 Landrace T|T
261 WSC100 Landrace T|T
262 WSC104 Landrace T|T
263 WSC105 Landrace N|N
264 WSC12 Landrace C|C
265 WSC13 Landrace C|C
266 WSC16 Landrace T|T
267 WSC17 Landrace C|C
268 WSC18 Landrace C|C
269 WSC20 Landrace C|C
270 WSC24 Landrace N|N
271 WSC25 Landrace T|T
272 WSC29 Landrace T|T
273 WSC31 Landrace T|T
274 WSC32 Landrace T|T
275 WSC34 Landrace T|T
276 WSC38 Landrace T|T
277 WSC39 Improved N|N
278 WSC40 Landrace T|T
279 WSC54 Landrace T|T
280 WSC56 Landrace T|T
281 WSC59 Landrace T|T
282 WSC68 Landrace C|C
283 WSC70 Landrace C|C
284 WSC73 Landrace C|C
285 WSC81 Landrace T|T
286 WSC85 Improved T|T
287 WSC91 Landrace T|T
288 WSC93 Landrace T|T
289 WSC98 Landrace T|T

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi1149 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p
sbi1149 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser