Variation ID : sbi1340

Variation Detail



Variation ID sbi1340
Type SNP
Position Chr01 18053-18053
Ref /Alleles A/ C
MAF A: 0.449
5' Flank GATTTCCCCTCTTAGTAGTCTGCTATCTAT
3' Flank TTAAATCCGGTCAAACACTTCTCTACTCAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved C|C
2 103 Improved C|C
3 107 Improved A|A
4 11 Improved C|C
5 110 Improved A|A
6 123 Landrace C|C
7 131 Improved A|A
8 132 Improved C|C
9 135 Improved C|C
10 137 Improved A|A
11 138 Improved A|A
12 14 Improved A|A
13 140 Improved A|A
14 141 Improved C|C
15 144 Improved C|C
16 150 Improved C|C
17 154 Improved C|C
18 159 Landrace A|A
19 16 Improved A|A
20 161 Landrace A|A
21 167 Improved A|A
22 168 Improved A|A
23 170 Improved A|A
24 173 Improved C|C
25 175 Improved C|C
26 176 Improved A|A
27 182 Landrace C|C
28 186 Improved A|A
29 190 Improved A|A
30 192 Improved A|A
31 194 Improved C|C
32 195 Improved C|C
33 197 Improved C|C
34 J22 Landrace C|C
35 J26 Landrace A|A
36 J5 Landrace C|C
37 J50 Landrace A|A
38 2001 Landrace C|C
39 2005 Improved C|C
40 2008 Improved A|A
41 2009 Landrace C|C
42 201 Improved C|C
43 2010 Landrace C|C
44 2016 Improved C|C
45 2019 Improved A|A
46 202 Improved A|A
47 2021 Improved C|C
48 2023 Improved C|C
49 2026 Improved A|A
50 2029 Improved C|C
51 2030 Landrace C|C
52 2031 Landrace A|A
53 2036 Improved A|A
54 2037 Improved C|C
55 2038 Improved C|C
56 2039 Improved C|C
57 204 Improved A|A
58 2042 Improved A|A
59 2043 Improved A|C
60 2048 Improved A|A
61 2049 Improved A|A
62 205 Improved N|N
63 2050 Improved C|C
64 2052 Improved A|A
65 2054 Improved C|C
66 2056 Improved A|A
67 2059 Improved C|C
68 206 Improved A|A
69 2064 Improved C|C
70 2065 Improved A|A
71 2067 Improved C|C
72 2068 Improved C|C
73 2069 Improved C|C
74 2071 Improved C|C
75 2074 Improved C|C
76 2075 Improved A|A
77 2076 Improved A|A
78 2080 Improved C|C
79 2081 Improved N|N
80 2082 Improved C|C
81 2086 Improved C|C
82 2088 Improved A|A
83 260 Wild sorghum N|N
84 261 Improved A|A
85 262 Improved C|C
86 263 Improved A|A
87 286 Improved A|A
88 29 Improved C|C
89 3 Improved A|A
90 302546 S.propinquum N|N
91 31 Improved A|C
92 32 Improved A|A
93 34 Improved A|A
94 346 Landrace A|A
95 348 Wild sorghum C|C
96 353 Wild sorghum C|C
97 355 Wild sorghum C|C
98 357 Wild sorghum C|C
99 364 Wild sorghum C|C
100 367 Landrace A|A
101 s37 S.propinquum C|C
102 s38 S.propinquum C|C
103 370 Landrace A|A
104 377 Wild sorghum C|C
105 392 Wild sorghum C|C
106 394 Wild sorghum C|C
107 40 Improved A|C
108 42 Improved C|C
109 43 Improved A|C
110 45 Improved C|C
111 47 Improved A|A
112 48 Improved C|C
113 51 Improved C|C
114 53 Improved C|C
115 56 Improved A|A
116 61 Improved A|A
117 62 Improved A|A
118 66 Landrace A|A
119 67 Improved A|C
120 68 Improved A|A
121 70 Improved C|C
122 73 Improved A|A
123 75 Improved A|A
124 88 Improved C|C
125 89 Improved C|C
126 91 Improved A|C
127 92 Improved C|C
128 93 Improved C|C
129 94 Improved C|C
130 95 Improved C|C
131 96 Improved C|C
132 97 Improved C|C
133 s1 Improved A|A
134 s36 Wild sorghum C|C
135 s2 Landrace A|A
136 s3 Improved A|A
137 s32 Improved A|A
138 s43 Weedy A|A
139 s40 Landrace C|C
140 s41 Weedy C|C
141 s39 Landrace A|C
142 s42 Landrace C|C
143 s47 Improved A|A
144 s5 Landrace C|C
145 GW102 Landrace A|A
146 GW103 Landrace C|C
147 GW104 Landrace A|A
148 GW105 Landrace C|C
149 GW16 Landrace N|N
150 GW2 Landrace A|A
151 GW34 Landrace C|C
152 GW37 Landrace C|C
153 GW58 Landrace C|C
154 GW59 Landrace C|C
155 GW9 Landrace C|C
156 s4 Weedy C|C
157 s6 Improved A|A
158 s7 Landrace C|C
159 s8 Landrace A|A
160 s9 Landrace A|A
161 J101 Landrace C|C
162 J103 Improved N|N
163 J112 Landrace C|C
164 J113 Improved A|A
165 J129 Improved A|A
166 J130 Improved A|A
167 J136 Improved A|A
168 J152 Improved A|A
169 J2 Landrace A|A
170 J20 Landrace A|A
171 J4 Landrace A|A
172 J42 Landrace A|A
173 J44 Landrace A|A
174 J49 Landrace C|C
175 J52 Landrace A|A
176 J53 Landrace C|C
177 J54 Landrace C|C
178 J57 Landrace A|A
179 J59 Landrace N|N
180 J64 Landrace A|A
181 J66 Landrace A|A
182 J67 Landrace A|A
183 J69 Landrace A|A
184 J87 Landrace C|C
185 J99 Landrace A|A
186 s45 Landrace A|A
187 s11 Improved C|C
188 s10 Improved A|A
189 s46 Improved A|A
190 s12 Improved A|A
191 s13 Landrace A|A
192 MHMD Landrace C|C
193 s14 Improved A|A
194 s15 Improved A|A
195 s34 Weedy C|C
196 s33 Wild sorghum C|C
197 s21 Wild sorghum A|A
198 s16 Wild sorghum C|C
199 s44 Improved A|A
200 s35 Landrace C|C
201 s31 Wild sorghum C|C
202 s17 Improved A|A
203 s18 Improved A|A
204 s20 Improved A|A
205 s19 Improved A|A
206 s22 Landrace C|C
207 s23 Landrace C|C
208 s24 Landrace C|C
209 s25 Landrace A|A
210 s26 Landrace C|C
211 s27 Landrace C|C
212 s28 Landrace A|A
213 s29 Landrace C|C
214 s30 Landrace A|A
215 SL25 Wild sorghum N|N
216 SL105 Wild sorghum C|C
217 SL108 Wild sorghum C|C
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum C|C
220 SL129 Wild sorghum C|C
221 SL130 Wild sorghum C|C
222 SL135 Wild sorghum C|C
223 SL136 Wild sorghum C|C
224 SL137 Wild sorghum C|C
225 SL138 Wild sorghum C|C
226 SL140 Wild sorghum C|C
227 SL141 Wild sorghum C|C
228 SL19 Wild sorghum C|C
229 SL28 Wild sorghum C|C
230 SL32 Wild sorghum C|C
231 SL35 Wild sorghum C|C
232 SL36 Wild sorghum C|C
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum A|A
235 SL41 Wild sorghum C|C
236 SL43 Wild sorghum C|C
237 SL47 Wild sorghum A|C
238 SL49 Wild sorghum C|C
239 SL51 Wild sorghum C|C
240 SL53 Wild sorghum C|C
241 SL62 Wild sorghum C|C
242 SL83 Wild sorghum N|N
243 SL97 Landrace C|C
244 s48 Improved A|A
245 Tu13 Wild sorghum C|C
246 Tu14 Wild sorghum C|C
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum C|C
249 WSC5 Landrace C|C
250 WSC15 Landrace C|C
251 WSC19 Landrace A|A
252 WSC30 Landrace A|A
253 WSC52 Landrace A|A
254 WSC6 Landrace C|C
255 WSC61 Landrace A|A
256 WSC71 Improved A|A
257 WSC72 Landrace A|A
258 WSC79 Landrace C|C
259 WSC94 Landrace A|A
260 WSC99 Landrace C|C
261 WSC100 Landrace C|C
262 WSC104 Landrace C|C
263 WSC105 Landrace A|A
264 WSC12 Landrace A|A
265 WSC13 Landrace A|A
266 WSC16 Landrace C|C
267 WSC17 Landrace A|A
268 WSC18 Landrace A|A
269 WSC20 Landrace A|A
270 WSC24 Landrace A|A
271 WSC25 Landrace C|C
272 WSC29 Landrace C|C
273 WSC31 Landrace A|A
274 WSC32 Landrace C|C
275 WSC34 Landrace A|A
276 WSC38 Landrace A|A
277 WSC39 Improved C|C
278 WSC40 Landrace A|A
279 WSC54 Landrace C|C
280 WSC56 Landrace C|C
281 WSC59 Landrace C|C
282 WSC68 Landrace N|N
283 WSC70 Landrace A|A
284 WSC73 Landrace A|A
285 WSC81 Landrace C|C
286 WSC85 Improved C|C
287 WSC91 Landrace C|C
288 WSC93 Landrace C|C
289 WSC98 Landrace C|C

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi1340 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi1340 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi1340 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi1340 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi1340 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser