Variation ID : sbi1416

Variation Detail



Variation ID sbi1416
Type SNP
Position Chr01 20061-20061
Ref /Alleles T/ A
MAF A: 0.007
5' Flank AAGTATACTGCTATATCTTGAGCAATTAAG
3' Flank AGCCATTAGTCAATGTTTCATATTTATCCG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved T|T
2 103 Improved T|T
3 107 Improved T|T
4 11 Improved T|T
5 110 Improved T|T
6 123 Landrace T|T
7 131 Improved T|T
8 132 Improved T|T
9 135 Improved T|T
10 137 Improved T|T
11 138 Improved T|T
12 14 Improved T|T
13 140 Improved T|T
14 141 Improved T|T
15 144 Improved T|T
16 150 Improved T|T
17 154 Improved T|T
18 159 Landrace T|T
19 16 Improved T|T
20 161 Landrace T|T
21 167 Improved T|T
22 168 Improved T|T
23 170 Improved T|T
24 173 Improved T|T
25 175 Improved T|T
26 176 Improved T|T
27 182 Landrace T|T
28 186 Improved T|T
29 190 Improved T|T
30 192 Improved T|T
31 194 Improved T|T
32 195 Improved T|T
33 197 Improved T|T
34 J22 Landrace T|T
35 J26 Landrace T|T
36 J5 Landrace T|T
37 J50 Landrace T|T
38 2001 Landrace T|T
39 2005 Improved T|T
40 2008 Improved N|N
41 2009 Landrace T|T
42 201 Improved T|T
43 2010 Landrace T|T
44 2016 Improved T|T
45 2019 Improved T|T
46 202 Improved T|T
47 2021 Improved T|T
48 2023 Improved T|T
49 2026 Improved T|T
50 2029 Improved T|T
51 2030 Landrace T|T
52 2031 Landrace T|T
53 2036 Improved T|T
54 2037 Improved T|T
55 2038 Improved T|T
56 2039 Improved T|T
57 204 Improved T|T
58 2042 Improved T|T
59 2043 Improved T|T
60 2048 Improved T|T
61 2049 Improved T|T
62 205 Improved T|T
63 2050 Improved T|T
64 2052 Improved T|T
65 2054 Improved T|T
66 2056 Improved T|T
67 2059 Improved T|T
68 206 Improved T|T
69 2064 Improved T|T
70 2065 Improved T|T
71 2067 Improved T|T
72 2068 Improved T|T
73 2069 Improved T|T
74 2071 Improved T|T
75 2074 Improved T|T
76 2075 Improved T|T
77 2076 Improved T|T
78 2080 Improved T|T
79 2081 Improved T|T
80 2082 Improved T|T
81 2086 Improved T|T
82 2088 Improved T|T
83 260 Wild sorghum T|T
84 261 Improved T|T
85 262 Improved T|T
86 263 Improved T|T
87 286 Improved T|T
88 29 Improved T|T
89 3 Improved T|T
90 302546 S.propinquum T|T
91 31 Improved T|T
92 32 Improved T|T
93 34 Improved T|T
94 346 Landrace T|T
95 348 Wild sorghum T|T
96 353 Wild sorghum T|T
97 355 Wild sorghum T|T
98 357 Wild sorghum T|T
99 364 Wild sorghum T|T
100 367 Landrace T|T
101 s37 S.propinquum T|T
102 s38 S.propinquum T|T
103 370 Landrace T|T
104 377 Wild sorghum T|T
105 392 Wild sorghum T|T
106 394 Wild sorghum T|T
107 40 Improved T|T
108 42 Improved T|T
109 43 Improved T|T
110 45 Improved T|T
111 47 Improved T|T
112 48 Improved T|T
113 51 Improved N|N
114 53 Improved T|T
115 56 Improved T|T
116 61 Improved T|T
117 62 Improved T|T
118 66 Landrace T|T
119 67 Improved T|T
120 68 Improved T|T
121 70 Improved T|T
122 73 Improved T|T
123 75 Improved T|T
124 88 Improved T|T
125 89 Improved T|T
126 91 Improved T|T
127 92 Improved T|T
128 93 Improved T|T
129 94 Improved T|T
130 95 Improved T|T
131 96 Improved T|T
132 97 Improved T|T
133 s1 Improved T|T
134 s36 Wild sorghum T|T
135 s2 Landrace T|T
136 s3 Improved T|T
137 s32 Improved T|T
138 s43 Weedy T|T
139 s40 Landrace T|T
140 s41 Weedy T|T
141 s39 Landrace T|T
142 s42 Landrace T|T
143 s47 Improved T|T
144 s5 Landrace T|T
145 GW102 Landrace T|T
146 GW103 Landrace T|T
147 GW104 Landrace T|T
148 GW105 Landrace T|T
149 GW16 Landrace T|T
150 GW2 Landrace T|T
151 GW34 Landrace T|T
152 GW37 Landrace T|T
153 GW58 Landrace T|T
154 GW59 Landrace T|T
155 GW9 Landrace T|T
156 s4 Weedy T|T
157 s6 Improved T|T
158 s7 Landrace T|T
159 s8 Landrace T|T
160 s9 Landrace T|T
161 J101 Landrace T|T
162 J103 Improved T|T
163 J112 Landrace T|T
164 J113 Improved T|T
165 J129 Improved T|T
166 J130 Improved T|T
167 J136 Improved T|T
168 J152 Improved T|T
169 J2 Landrace T|T
170 J20 Landrace T|T
171 J4 Landrace T|T
172 J42 Landrace T|T
173 J44 Landrace T|T
174 J49 Landrace T|T
175 J52 Landrace T|T
176 J53 Landrace T|T
177 J54 Landrace T|T
178 J57 Landrace T|T
179 J59 Landrace T|T
180 J64 Landrace T|T
181 J66 Landrace N|N
182 J67 Landrace T|T
183 J69 Landrace T|T
184 J87 Landrace T|T
185 J99 Landrace T|T
186 s45 Landrace T|T
187 s11 Improved T|T
188 s10 Improved T|T
189 s46 Improved T|T
190 s12 Improved T|T
191 s13 Landrace T|T
192 MHMD Landrace T|T
193 s14 Improved T|T
194 s15 Improved T|T
195 s34 Weedy T|T
196 s33 Wild sorghum T|T
197 s21 Wild sorghum T|T
198 s16 Wild sorghum T|T
199 s44 Improved T|T
200 s35 Landrace T|T
201 s31 Wild sorghum T|T
202 s17 Improved T|T
203 s18 Improved T|T
204 s20 Improved T|T
205 s19 Improved T|T
206 s22 Landrace T|T
207 s23 Landrace T|T
208 s24 Landrace T|T
209 s25 Landrace T|T
210 s26 Landrace T|T
211 s27 Landrace T|T
212 s28 Landrace T|T
213 s29 Landrace T|T
214 s30 Landrace T|T
215 SL25 Wild sorghum A|A
216 SL105 Wild sorghum T|T
217 SL108 Wild sorghum T|T
218 SL109 Wild sorghum T|T
219 SL12 Wild sorghum T|T
220 SL129 Wild sorghum T|T
221 SL130 Wild sorghum T|T
222 SL135 Wild sorghum T|T
223 SL136 Wild sorghum A|A
224 SL137 Wild sorghum T|T
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum T|T
227 SL141 Wild sorghum T|T
228 SL19 Wild sorghum T|T
229 SL28 Wild sorghum T|T
230 SL32 Wild sorghum T|T
231 SL35 Wild sorghum T|T
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum T|T
235 SL41 Wild sorghum T|T
236 SL43 Wild sorghum T|T
237 SL47 Wild sorghum T|T
238 SL49 Wild sorghum T|T
239 SL51 Wild sorghum T|T
240 SL53 Wild sorghum T|T
241 SL62 Wild sorghum T|T
242 SL83 Wild sorghum T|T
243 SL97 Landrace T|T
244 s48 Improved T|T
245 Tu13 Wild sorghum T|T
246 Tu14 Wild sorghum T|T
247 Tu30 Wild sorghum T|T
248 Tu5 Wild sorghum T|T
249 WSC5 Landrace T|T
250 WSC15 Landrace T|T
251 WSC19 Landrace T|T
252 WSC30 Landrace T|T
253 WSC52 Landrace T|T
254 WSC6 Landrace T|T
255 WSC61 Landrace T|T
256 WSC71 Improved T|T
257 WSC72 Landrace T|T
258 WSC79 Landrace T|T
259 WSC94 Landrace T|T
260 WSC99 Landrace T|T
261 WSC100 Landrace T|T
262 WSC104 Landrace T|T
263 WSC105 Landrace T|T
264 WSC12 Landrace T|T
265 WSC13 Landrace T|T
266 WSC16 Landrace T|T
267 WSC17 Landrace T|T
268 WSC18 Landrace T|T
269 WSC20 Landrace T|T
270 WSC24 Landrace T|T
271 WSC25 Landrace T|T
272 WSC29 Landrace T|T
273 WSC31 Landrace T|T
274 WSC32 Landrace T|T
275 WSC34 Landrace T|T
276 WSC38 Landrace T|T
277 WSC39 Improved T|T
278 WSC40 Landrace T|T
279 WSC54 Landrace T|T
280 WSC56 Landrace T|T
281 WSC59 Landrace T|T
282 WSC68 Landrace T|T
283 WSC70 Landrace T|T
284 WSC73 Landrace T|T
285 WSC81 Landrace T|T
286 WSC85 Improved N|N
287 WSC91 Landrace T|T
288 WSC93 Landrace T|T
289 WSC98 Landrace T|T

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi1416 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi1416 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi1416 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi1416 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi1416 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi1416 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi1416 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser