Variation ID : sbi1417

Variation Detail



Variation ID sbi1417
Type SNP
Position Chr01 20066-20066
Ref /Alleles A/ G
MAF G: 0.004
5' Flank TACTGCTATATCTTGAGCAATTAAGTAGCC
3' Flank TTAGTCAATGTTTCATATTTATCCGAAGGG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved A|A
2 103 Improved A|A
3 107 Improved A|A
4 11 Improved A|A
5 110 Improved A|A
6 123 Landrace A|A
7 131 Improved A|A
8 132 Improved A|A
9 135 Improved A|A
10 137 Improved A|A
11 138 Improved A|A
12 14 Improved A|A
13 140 Improved A|A
14 141 Improved A|A
15 144 Improved A|A
16 150 Improved A|A
17 154 Improved A|A
18 159 Landrace A|A
19 16 Improved A|A
20 161 Landrace A|A
21 167 Improved A|A
22 168 Improved A|A
23 170 Improved A|A
24 173 Improved A|A
25 175 Improved A|A
26 176 Improved A|A
27 182 Landrace A|A
28 186 Improved A|A
29 190 Improved A|A
30 192 Improved A|A
31 194 Improved A|A
32 195 Improved A|A
33 197 Improved A|A
34 J22 Landrace A|A
35 J26 Landrace A|A
36 J5 Landrace A|A
37 J50 Landrace A|A
38 2001 Landrace A|A
39 2005 Improved A|A
40 2008 Improved N|N
41 2009 Landrace A|A
42 201 Improved A|A
43 2010 Landrace A|A
44 2016 Improved A|A
45 2019 Improved A|A
46 202 Improved A|A
47 2021 Improved A|A
48 2023 Improved A|A
49 2026 Improved A|A
50 2029 Improved A|A
51 2030 Landrace A|A
52 2031 Landrace A|A
53 2036 Improved A|A
54 2037 Improved A|A
55 2038 Improved A|A
56 2039 Improved A|A
57 204 Improved A|A
58 2042 Improved A|A
59 2043 Improved A|A
60 2048 Improved A|A
61 2049 Improved A|A
62 205 Improved A|A
63 2050 Improved A|A
64 2052 Improved A|A
65 2054 Improved A|A
66 2056 Improved A|A
67 2059 Improved A|A
68 206 Improved A|A
69 2064 Improved A|A
70 2065 Improved A|A
71 2067 Improved A|A
72 2068 Improved A|A
73 2069 Improved A|A
74 2071 Improved A|A
75 2074 Improved A|A
76 2075 Improved A|A
77 2076 Improved A|A
78 2080 Improved A|A
79 2081 Improved A|A
80 2082 Improved A|A
81 2086 Improved A|A
82 2088 Improved A|A
83 260 Wild sorghum A|A
84 261 Improved A|A
85 262 Improved A|A
86 263 Improved A|A
87 286 Improved A|A
88 29 Improved A|A
89 3 Improved A|A
90 302546 S.propinquum A|A
91 31 Improved A|A
92 32 Improved A|A
93 34 Improved A|A
94 346 Landrace A|A
95 348 Wild sorghum A|A
96 353 Wild sorghum A|A
97 355 Wild sorghum A|A
98 357 Wild sorghum A|A
99 364 Wild sorghum A|A
100 367 Landrace A|A
101 s37 S.propinquum A|A
102 s38 S.propinquum A|A
103 370 Landrace A|A
104 377 Wild sorghum A|A
105 392 Wild sorghum A|A
106 394 Wild sorghum A|A
107 40 Improved A|A
108 42 Improved A|A
109 43 Improved A|A
110 45 Improved A|A
111 47 Improved A|A
112 48 Improved A|A
113 51 Improved N|N
114 53 Improved A|A
115 56 Improved A|A
116 61 Improved A|A
117 62 Improved A|A
118 66 Landrace A|A
119 67 Improved A|A
120 68 Improved A|A
121 70 Improved A|A
122 73 Improved A|A
123 75 Improved A|A
124 88 Improved A|A
125 89 Improved A|A
126 91 Improved A|A
127 92 Improved A|A
128 93 Improved A|A
129 94 Improved A|A
130 95 Improved A|A
131 96 Improved A|A
132 97 Improved A|A
133 s1 Improved A|A
134 s36 Wild sorghum A|A
135 s2 Landrace A|A
136 s3 Improved A|A
137 s32 Improved A|A
138 s43 Weedy A|A
139 s40 Landrace A|A
140 s41 Weedy A|A
141 s39 Landrace A|A
142 s42 Landrace A|A
143 s47 Improved A|A
144 s5 Landrace A|A
145 GW102 Landrace A|A
146 GW103 Landrace A|A
147 GW104 Landrace A|A
148 GW105 Landrace A|A
149 GW16 Landrace A|A
150 GW2 Landrace A|A
151 GW34 Landrace A|A
152 GW37 Landrace A|A
153 GW58 Landrace A|A
154 GW59 Landrace A|A
155 GW9 Landrace A|A
156 s4 Weedy A|A
157 s6 Improved A|A
158 s7 Landrace A|A
159 s8 Landrace A|A
160 s9 Landrace A|A
161 J101 Landrace A|A
162 J103 Improved A|A
163 J112 Landrace A|A
164 J113 Improved A|A
165 J129 Improved A|A
166 J130 Improved A|A
167 J136 Improved A|A
168 J152 Improved A|A
169 J2 Landrace A|A
170 J20 Landrace A|A
171 J4 Landrace A|A
172 J42 Landrace A|A
173 J44 Landrace A|A
174 J49 Landrace A|A
175 J52 Landrace A|A
176 J53 Landrace A|A
177 J54 Landrace A|A
178 J57 Landrace A|A
179 J59 Landrace A|A
180 J64 Landrace A|A
181 J66 Landrace N|N
182 J67 Landrace A|A
183 J69 Landrace A|A
184 J87 Landrace A|A
185 J99 Landrace A|A
186 s45 Landrace A|A
187 s11 Improved A|A
188 s10 Improved A|A
189 s46 Improved A|A
190 s12 Improved A|A
191 s13 Landrace A|A
192 MHMD Landrace A|A
193 s14 Improved A|A
194 s15 Improved A|A
195 s34 Weedy A|A
196 s33 Wild sorghum A|A
197 s21 Wild sorghum A|A
198 s16 Wild sorghum A|A
199 s44 Improved A|A
200 s35 Landrace A|A
201 s31 Wild sorghum A|A
202 s17 Improved A|A
203 s18 Improved A|A
204 s20 Improved A|A
205 s19 Improved A|A
206 s22 Landrace A|A
207 s23 Landrace A|A
208 s24 Landrace A|A
209 s25 Landrace A|A
210 s26 Landrace A|A
211 s27 Landrace A|A
212 s28 Landrace A|A
213 s29 Landrace A|A
214 s30 Landrace A|A
215 SL25 Wild sorghum A|A
216 SL105 Wild sorghum A|A
217 SL108 Wild sorghum A|A
218 SL109 Wild sorghum A|A
219 SL12 Wild sorghum A|A
220 SL129 Wild sorghum A|A
221 SL130 Wild sorghum A|A
222 SL135 Wild sorghum A|A
223 SL136 Wild sorghum A|A
224 SL137 Wild sorghum A|A
225 SL138 Wild sorghum A|A
226 SL140 Wild sorghum A|A
227 SL141 Wild sorghum A|A
228 SL19 Wild sorghum A|A
229 SL28 Wild sorghum A|A
230 SL32 Wild sorghum A|A
231 SL35 Wild sorghum A|A
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum A|A
235 SL41 Wild sorghum A|A
236 SL43 Wild sorghum A|A
237 SL47 Wild sorghum A|A
238 SL49 Wild sorghum A|A
239 SL51 Wild sorghum G|G
240 SL53 Wild sorghum A|A
241 SL62 Wild sorghum A|A
242 SL83 Wild sorghum A|A
243 SL97 Landrace A|A
244 s48 Improved A|A
245 Tu13 Wild sorghum A|A
246 Tu14 Wild sorghum A|A
247 Tu30 Wild sorghum A|A
248 Tu5 Wild sorghum A|A
249 WSC5 Landrace A|A
250 WSC15 Landrace A|A
251 WSC19 Landrace A|A
252 WSC30 Landrace A|A
253 WSC52 Landrace A|A
254 WSC6 Landrace A|A
255 WSC61 Landrace A|A
256 WSC71 Improved A|A
257 WSC72 Landrace A|A
258 WSC79 Landrace A|A
259 WSC94 Landrace A|A
260 WSC99 Landrace A|A
261 WSC100 Landrace A|A
262 WSC104 Landrace A|A
263 WSC105 Landrace A|A
264 WSC12 Landrace A|A
265 WSC13 Landrace A|A
266 WSC16 Landrace A|A
267 WSC17 Landrace A|A
268 WSC18 Landrace A|A
269 WSC20 Landrace A|A
270 WSC24 Landrace A|A
271 WSC25 Landrace A|A
272 WSC29 Landrace A|A
273 WSC31 Landrace A|A
274 WSC32 Landrace A|A
275 WSC34 Landrace A|A
276 WSC38 Landrace A|A
277 WSC39 Improved A|A
278 WSC40 Landrace A|A
279 WSC54 Landrace A|A
280 WSC56 Landrace A|A
281 WSC59 Landrace A|A
282 WSC68 Landrace A|A
283 WSC70 Landrace A|A
284 WSC73 Landrace A|A
285 WSC81 Landrace A|A
286 WSC85 Improved N|N
287 WSC91 Landrace A|A
288 WSC93 Landrace A|A
289 WSC98 Landrace A|A

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi1417 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi1417 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi1417 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi1417 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi1417 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi1417 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi1417 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser