Variation ID : sbi1681

Variation Detail



Variation ID sbi1681
Type SNP
Position Chr01 24086-24086
Ref /Alleles C/ T
MAF T: 0.005
5' Flank CGGTAGATTTTGTTATATACTTTGGATTAA
3' Flank GGGTTTGTTTATTTTCACCCACGAAAGTTT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved C|C
2 103 Improved N|N
3 107 Improved C|C
4 11 Improved C|C
5 110 Improved C|C
6 123 Landrace N|N
7 131 Improved C|C
8 132 Improved C|C
9 135 Improved C|C
10 137 Improved N|N
11 138 Improved C|C
12 14 Improved C|C
13 140 Improved C|C
14 141 Improved C|C
15 144 Improved C|C
16 150 Improved N|N
17 154 Improved C|C
18 159 Landrace N|N
19 16 Improved N|N
20 161 Landrace C|C
21 167 Improved C|C
22 168 Improved N|N
23 170 Improved C|C
24 173 Improved C|C
25 175 Improved C|C
26 176 Improved C|C
27 182 Landrace C|C
28 186 Improved N|N
29 190 Improved C|C
30 192 Improved C|C
31 194 Improved C|C
32 195 Improved N|N
33 197 Improved C|C
34 J22 Landrace C|C
35 J26 Landrace N|N
36 J5 Landrace C|C
37 J50 Landrace C|C
38 2001 Landrace C|C
39 2005 Improved N|N
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved C|C
43 2010 Landrace C|C
44 2016 Improved C|C
45 2019 Improved N|N
46 202 Improved C|C
47 2021 Improved C|C
48 2023 Improved N|N
49 2026 Improved C|C
50 2029 Improved C|C
51 2030 Landrace C|C
52 2031 Landrace N|N
53 2036 Improved C|C
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved N|N
57 204 Improved C|C
58 2042 Improved C|C
59 2043 Improved N|N
60 2048 Improved C|C
61 2049 Improved N|N
62 205 Improved C|C
63 2050 Improved C|C
64 2052 Improved C|C
65 2054 Improved C|C
66 2056 Improved N|N
67 2059 Improved C|C
68 206 Improved N|N
69 2064 Improved C|C
70 2065 Improved N|N
71 2067 Improved N|N
72 2068 Improved N|N
73 2069 Improved C|C
74 2071 Improved C|C
75 2074 Improved N|N
76 2075 Improved N|N
77 2076 Improved C|C
78 2080 Improved N|N
79 2081 Improved C|C
80 2082 Improved C|C
81 2086 Improved C|C
82 2088 Improved C|C
83 260 Wild sorghum C|C
84 261 Improved C|C
85 262 Improved C|C
86 263 Improved C|C
87 286 Improved C|C
88 29 Improved C|C
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved N|N
92 32 Improved N|N
93 34 Improved C|C
94 346 Landrace C|C
95 348 Wild sorghum C|C
96 353 Wild sorghum N|N
97 355 Wild sorghum C|C
98 357 Wild sorghum C|C
99 364 Wild sorghum N|N
100 367 Landrace C|C
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum N|N
106 394 Wild sorghum C|C
107 40 Improved C|C
108 42 Improved C|C
109 43 Improved C|C
110 45 Improved C|C
111 47 Improved C|C
112 48 Improved C|C
113 51 Improved C|C
114 53 Improved N|N
115 56 Improved C|C
116 61 Improved N|N
117 62 Improved N|N
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved C|C
121 70 Improved C|C
122 73 Improved N|N
123 75 Improved N|N
124 88 Improved C|C
125 89 Improved C|C
126 91 Improved C|C
127 92 Improved N|N
128 93 Improved C|C
129 94 Improved C|C
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved N|N
133 s1 Improved C|C
134 s36 Wild sorghum C|C
135 s2 Landrace C|C
136 s3 Improved N|N
137 s32 Improved C|C
138 s43 Weedy C|C
139 s40 Landrace N|N
140 s41 Weedy N|N
141 s39 Landrace C|C
142 s42 Landrace C|C
143 s47 Improved C|C
144 s5 Landrace C|C
145 GW102 Landrace C|C
146 GW103 Landrace C|C
147 GW104 Landrace N|N
148 GW105 Landrace N|N
149 GW16 Landrace C|C
150 GW2 Landrace N|N
151 GW34 Landrace N|N
152 GW37 Landrace C|C
153 GW58 Landrace N|N
154 GW59 Landrace C|C
155 GW9 Landrace C|C
156 s4 Weedy C|C
157 s6 Improved C|C
158 s7 Landrace C|C
159 s8 Landrace C|C
160 s9 Landrace C|C
161 J101 Landrace N|N
162 J103 Improved C|C
163 J112 Landrace C|C
164 J113 Improved N|N
165 J129 Improved N|N
166 J130 Improved C|C
167 J136 Improved C|C
168 J152 Improved N|N
169 J2 Landrace C|C
170 J20 Landrace C|C
171 J4 Landrace C|C
172 J42 Landrace C|C
173 J44 Landrace N|N
174 J49 Landrace N|N
175 J52 Landrace C|C
176 J53 Landrace C|C
177 J54 Landrace C|C
178 J57 Landrace N|N
179 J59 Landrace N|N
180 J64 Landrace C|C
181 J66 Landrace N|N
182 J67 Landrace C|C
183 J69 Landrace N|N
184 J87 Landrace N|N
185 J99 Landrace C|C
186 s45 Landrace C|C
187 s11 Improved N|N
188 s10 Improved C|C
189 s46 Improved C|C
190 s12 Improved C|C
191 s13 Landrace C|C
192 MHMD Landrace N|N
193 s14 Improved C|C
194 s15 Improved C|C
195 s34 Weedy C|C
196 s33 Wild sorghum C|C
197 s21 Wild sorghum C|C
198 s16 Wild sorghum C|C
199 s44 Improved C|C
200 s35 Landrace C|C
201 s31 Wild sorghum C|C
202 s17 Improved N|N
203 s18 Improved C|C
204 s20 Improved C|C
205 s19 Improved C|C
206 s22 Landrace C|C
207 s23 Landrace C|C
208 s24 Landrace C|C
209 s25 Landrace C|C
210 s26 Landrace C|C
211 s27 Landrace C|C
212 s28 Landrace C|C
213 s29 Landrace C|C
214 s30 Landrace C|C
215 SL25 Wild sorghum C|C
216 SL105 Wild sorghum C|C
217 SL108 Wild sorghum C|C
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum C|C
220 SL129 Wild sorghum C|C
221 SL130 Wild sorghum C|C
222 SL135 Wild sorghum C|C
223 SL136 Wild sorghum C|C
224 SL137 Wild sorghum C|C
225 SL138 Wild sorghum C|C
226 SL140 Wild sorghum T|T
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum C|C
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum C|C
233 SL37 Wild sorghum C|C
234 SL39 Wild sorghum C|C
235 SL41 Wild sorghum N|N
236 SL43 Wild sorghum C|C
237 SL47 Wild sorghum C|C
238 SL49 Wild sorghum C|C
239 SL51 Wild sorghum C|C
240 SL53 Wild sorghum C|C
241 SL62 Wild sorghum C|C
242 SL83 Wild sorghum N|N
243 SL97 Landrace C|C
244 s48 Improved C|C
245 Tu13 Wild sorghum C|C
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum C|C
248 Tu5 Wild sorghum C|C
249 WSC5 Landrace C|C
250 WSC15 Landrace C|C
251 WSC19 Landrace C|C
252 WSC30 Landrace C|C
253 WSC52 Landrace C|C
254 WSC6 Landrace C|C
255 WSC61 Landrace N|N
256 WSC71 Improved C|C
257 WSC72 Landrace N|N
258 WSC79 Landrace C|C
259 WSC94 Landrace N|N
260 WSC99 Landrace N|N
261 WSC100 Landrace C|C
262 WSC104 Landrace C|C
263 WSC105 Landrace C|C
264 WSC12 Landrace C|C
265 WSC13 Landrace C|C
266 WSC16 Landrace N|N
267 WSC17 Landrace C|C
268 WSC18 Landrace N|N
269 WSC20 Landrace C|C
270 WSC24 Landrace N|N
271 WSC25 Landrace N|N
272 WSC29 Landrace N|N
273 WSC31 Landrace C|C
274 WSC32 Landrace N|N
275 WSC34 Landrace N|N
276 WSC38 Landrace N|N
277 WSC39 Improved C|C
278 WSC40 Landrace C|C
279 WSC54 Landrace C|C
280 WSC56 Landrace N|N
281 WSC59 Landrace C|C
282 WSC68 Landrace N|N
283 WSC70 Landrace C|C
284 WSC73 Landrace C|C
285 WSC81 Landrace N|N
286 WSC85 Improved C|C
287 WSC91 Landrace C|C
288 WSC93 Landrace C|C
289 WSC98 Landrace C|C

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi1681 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi1681 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi1681 Sobic.001G000300 intron variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi1681 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi1681 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi1681 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi1681 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser