Variation ID : sbi1691

Variation Detail



Variation ID sbi1691
Type SNP
Position Chr01 24159-24159
Ref /Alleles T/ C
MAF C: 0.004
5' Flank GCGCCATCGATGGAACGCCGTCATTGCCGT
3' Flank ACATGCGTCTGCATGCAGGATGTTTCGTGT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved T|T
2 103 Improved N|N
3 107 Improved T|T
4 11 Improved N|N
5 110 Improved N|N
6 123 Landrace N|N
7 131 Improved N|N
8 132 Improved T|T
9 135 Improved T|T
10 137 Improved N|N
11 138 Improved N|N
12 14 Improved T|T
13 140 Improved N|N
14 141 Improved T|T
15 144 Improved T|T
16 150 Improved N|N
17 154 Improved N|N
18 159 Landrace N|N
19 16 Improved N|N
20 161 Landrace N|N
21 167 Improved T|T
22 168 Improved N|N
23 170 Improved N|N
24 173 Improved T|T
25 175 Improved T|T
26 176 Improved N|N
27 182 Landrace T|T
28 186 Improved N|N
29 190 Improved T|T
30 192 Improved T|T
31 194 Improved N|N
32 195 Improved N|N
33 197 Improved N|N
34 J22 Landrace N|N
35 J26 Landrace N|N
36 J5 Landrace N|N
37 J50 Landrace N|N
38 2001 Landrace T|T
39 2005 Improved N|N
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved T|T
43 2010 Landrace T|T
44 2016 Improved N|N
45 2019 Improved N|N
46 202 Improved T|T
47 2021 Improved T|T
48 2023 Improved N|N
49 2026 Improved T|T
50 2029 Improved T|T
51 2030 Landrace N|N
52 2031 Landrace N|N
53 2036 Improved T|T
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved N|N
57 204 Improved T|T
58 2042 Improved T|T
59 2043 Improved N|N
60 2048 Improved T|T
61 2049 Improved N|N
62 205 Improved N|N
63 2050 Improved T|T
64 2052 Improved T|T
65 2054 Improved N|N
66 2056 Improved N|N
67 2059 Improved N|N
68 206 Improved N|N
69 2064 Improved N|N
70 2065 Improved N|N
71 2067 Improved N|N
72 2068 Improved N|N
73 2069 Improved T|T
74 2071 Improved T|T
75 2074 Improved T|T
76 2075 Improved N|N
77 2076 Improved T|T
78 2080 Improved N|N
79 2081 Improved N|N
80 2082 Improved T|T
81 2086 Improved N|N
82 2088 Improved T|T
83 260 Wild sorghum T|T
84 261 Improved T|T
85 262 Improved T|T
86 263 Improved N|N
87 286 Improved T|T
88 29 Improved N|N
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved N|N
92 32 Improved N|N
93 34 Improved N|N
94 346 Landrace T|T
95 348 Wild sorghum T|T
96 353 Wild sorghum N|N
97 355 Wild sorghum N|N
98 357 Wild sorghum N|N
99 364 Wild sorghum N|N
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum N|N
106 394 Wild sorghum N|N
107 40 Improved T|T
108 42 Improved N|N
109 43 Improved T|T
110 45 Improved T|T
111 47 Improved T|T
112 48 Improved T|T
113 51 Improved T|T
114 53 Improved N|N
115 56 Improved N|N
116 61 Improved N|N
117 62 Improved N|N
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved T|T
121 70 Improved T|T
122 73 Improved N|N
123 75 Improved N|N
124 88 Improved N|N
125 89 Improved T|T
126 91 Improved T|T
127 92 Improved N|N
128 93 Improved T|T
129 94 Improved T|T
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved N|N
133 s1 Improved T|T
134 s36 Wild sorghum T|T
135 s2 Landrace T|T
136 s3 Improved T|T
137 s32 Improved T|T
138 s43 Weedy T|T
139 s40 Landrace N|N
140 s41 Weedy N|N
141 s39 Landrace T|T
142 s42 Landrace T|T
143 s47 Improved T|T
144 s5 Landrace T|T
145 GW102 Landrace T|T
146 GW103 Landrace T|T
147 GW104 Landrace N|N
148 GW105 Landrace N|N
149 GW16 Landrace T|T
150 GW2 Landrace N|N
151 GW34 Landrace N|N
152 GW37 Landrace T|T
153 GW58 Landrace N|N
154 GW59 Landrace N|N
155 GW9 Landrace T|T
156 s4 Weedy T|T
157 s6 Improved T|T
158 s7 Landrace N|N
159 s8 Landrace T|T
160 s9 Landrace T|T
161 J101 Landrace N|N
162 J103 Improved N|N
163 J112 Landrace T|T
164 J113 Improved N|N
165 J129 Improved N|N
166 J130 Improved T|T
167 J136 Improved N|N
168 J152 Improved N|N
169 J2 Landrace T|T
170 J20 Landrace N|N
171 J4 Landrace T|T
172 J42 Landrace T|T
173 J44 Landrace N|N
174 J49 Landrace N|N
175 J52 Landrace T|T
176 J53 Landrace T|T
177 J54 Landrace T|T
178 J57 Landrace N|N
179 J59 Landrace N|N
180 J64 Landrace T|T
181 J66 Landrace N|N
182 J67 Landrace N|N
183 J69 Landrace N|N
184 J87 Landrace N|N
185 J99 Landrace T|T
186 s45 Landrace T|T
187 s11 Improved N|N
188 s10 Improved T|T
189 s46 Improved T|T
190 s12 Improved T|T
191 s13 Landrace T|T
192 MHMD Landrace N|N
193 s14 Improved T|T
194 s15 Improved T|T
195 s34 Weedy T|T
196 s33 Wild sorghum T|T
197 s21 Wild sorghum T|T
198 s16 Wild sorghum T|T
199 s44 Improved T|T
200 s35 Landrace T|T
201 s31 Wild sorghum T|T
202 s17 Improved T|T
203 s18 Improved T|T
204 s20 Improved T|T
205 s19 Improved T|T
206 s22 Landrace T|T
207 s23 Landrace T|T
208 s24 Landrace T|T
209 s25 Landrace T|T
210 s26 Landrace T|T
211 s27 Landrace T|T
212 s28 Landrace T|T
213 s29 Landrace T|T
214 s30 Landrace T|T
215 SL25 Wild sorghum T|T
216 SL105 Wild sorghum T|T
217 SL108 Wild sorghum T|T
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum T|T
221 SL130 Wild sorghum T|T
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum T|T
224 SL137 Wild sorghum N|N
225 SL138 Wild sorghum T|T
226 SL140 Wild sorghum T|T
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum T|T
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum T|T
234 SL39 Wild sorghum T|T
235 SL41 Wild sorghum T|T
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum T|T
238 SL49 Wild sorghum T|T
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum N|N
241 SL62 Wild sorghum T|C
242 SL83 Wild sorghum N|N
243 SL97 Landrace T|T
244 s48 Improved T|T
245 Tu13 Wild sorghum T|T
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum T|T
248 Tu5 Wild sorghum T|T
249 WSC5 Landrace N|N
250 WSC15 Landrace N|N
251 WSC19 Landrace T|T
252 WSC30 Landrace N|N
253 WSC52 Landrace T|T
254 WSC6 Landrace T|T
255 WSC61 Landrace N|N
256 WSC71 Improved N|N
257 WSC72 Landrace N|N
258 WSC79 Landrace T|T
259 WSC94 Landrace N|N
260 WSC99 Landrace N|N
261 WSC100 Landrace T|T
262 WSC104 Landrace N|N
263 WSC105 Landrace N|N
264 WSC12 Landrace T|T
265 WSC13 Landrace N|N
266 WSC16 Landrace N|N
267 WSC17 Landrace N|N
268 WSC18 Landrace N|N
269 WSC20 Landrace N|N
270 WSC24 Landrace N|N
271 WSC25 Landrace N|N
272 WSC29 Landrace N|N
273 WSC31 Landrace N|N
274 WSC32 Landrace N|N
275 WSC34 Landrace N|N
276 WSC38 Landrace N|N
277 WSC39 Improved T|T
278 WSC40 Landrace N|N
279 WSC54 Landrace T|T
280 WSC56 Landrace N|N
281 WSC59 Landrace N|N
282 WSC68 Landrace N|N
283 WSC70 Landrace N|N
284 WSC73 Landrace N|N
285 WSC81 Landrace N|N
286 WSC85 Improved N|N
287 WSC91 Landrace N|N
288 WSC93 Landrace T|T
289 WSC98 Landrace T|T

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi1691 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi1691 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi1691 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi1691 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi1691 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi1691 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi1691 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser