Variation ID : sbi170

Variation Detail



Variation ID sbi170
Type SNP
Position Chr01 2953-2953
Ref /Alleles G/ C
MAF G: 0.489
5' Flank ACTTACAACGCGAGCAATCACTAGTACGTA
3' Flank AGAGGTACTATATATCCTTTGTACGTACAC

Individual Alleles

id Sample Id Type Alleles
1 101 Improved C|C
2 103 Improved C|C
3 107 Improved G|G
4 11 Improved C|C
5 110 Improved G|G
6 123 Landrace C|C
7 131 Improved G|G
8 132 Improved C|C
9 135 Improved C|C
10 137 Improved G|G
11 138 Improved G|G
12 14 Improved G|G
13 140 Improved G|G
14 141 Improved C|C
15 144 Improved C|C
16 150 Improved C|C
17 154 Improved C|C
18 159 Landrace G|G
19 16 Improved G|G
20 161 Landrace G|G
21 167 Improved G|G
22 168 Improved G|G
23 170 Improved G|G
24 173 Improved G|C
25 175 Improved G|C
26 176 Improved G|G
27 182 Landrace C|C
28 186 Improved G|G
29 190 Improved G|G
30 192 Improved G|G
31 194 Improved C|C
32 195 Improved C|C
33 197 Improved C|C
34 J22 Landrace C|C
35 J26 Landrace G|G
36 J5 Landrace C|C
37 J50 Landrace G|G
38 2001 Landrace C|C
39 2005 Improved C|C
40 2008 Improved G|G
41 2009 Landrace *|*
42 201 Improved C|C
43 2010 Landrace C|C
44 2016 Improved C|C
45 2019 Improved G|G
46 202 Improved G|G
47 2021 Improved C|C
48 2023 Improved C|C
49 2026 Improved G|G
50 2029 Improved C|C
51 2030 Landrace C|C
52 2031 Landrace N|N
53 2036 Improved G|G
54 2037 Improved C|C
55 2038 Improved C|C
56 2039 Improved C|C
57 204 Improved G|C
58 2042 Improved G|G
59 2043 Improved G|C
60 2048 Improved G|G
61 2049 Improved G|G
62 205 Improved G|G
63 2050 Improved C|C
64 2052 Improved G|G
65 2054 Improved C|C
66 2056 Improved N|N
67 2059 Improved G|C
68 206 Improved N|N
69 2064 Improved C|C
70 2065 Improved G|G
71 2067 Improved C|C
72 2068 Improved C|C
73 2069 Improved C|C
74 2071 Improved C|C
75 2074 Improved C|C
76 2075 Improved G|G
77 2076 Improved G|G
78 2080 Improved C|C
79 2081 Improved G|G
80 2082 Improved C|C
81 2086 Improved C|C
82 2088 Improved G|G
83 260 Wild sorghum N|N
84 261 Improved G|G
85 262 Improved C|C
86 263 Improved G|G
87 286 Improved G|G
88 29 Improved C|C
89 3 Improved G|G
90 302546 S.propinquum G|G
91 31 Improved G|C
92 32 Improved G|G
93 34 Improved G|C
94 346 Landrace G|G
95 348 Wild sorghum C|C
96 353 Wild sorghum C|C
97 355 Wild sorghum C|C
98 357 Wild sorghum C|C
99 364 Wild sorghum C|C
100 367 Landrace G|G
101 s37 S.propinquum G|G
102 s38 S.propinquum G|G
103 370 Landrace G|G
104 377 Wild sorghum C|C
105 392 Wild sorghum C|C
106 394 Wild sorghum C|C
107 40 Improved G|C
108 42 Improved C|C
109 43 Improved G|C
110 45 Improved C|C
111 47 Improved G|G
112 48 Improved C|C
113 51 Improved C|C
114 53 Improved C|C
115 56 Improved G|G
116 61 Improved G|G
117 62 Improved G|G
118 66 Landrace G|G
119 67 Improved G|C
120 68 Improved G|G
121 70 Improved C|C
122 73 Improved G|G
123 75 Improved G|G
124 88 Improved C|C
125 89 Improved C|C
126 91 Improved G|*
127 92 Improved C|C
128 93 Improved *|*
129 94 Improved C|C
130 95 Improved G|C
131 96 Improved C|C
132 97 Improved C|C
133 s1 Improved G|G
134 s36 Wild sorghum C|C
135 s2 Landrace G|G
136 s3 Improved G|G
137 s32 Improved G|G
138 s43 Weedy G|G
139 s40 Landrace N|N
140 s41 Weedy N|N
141 s39 Landrace G|G
142 s42 Landrace N|N
143 s47 Improved G|G
144 s5 Landrace N|N
145 GW102 Landrace G|G
146 GW103 Landrace G|C
147 GW104 Landrace G|G
148 GW105 Landrace C|C
149 GW16 Landrace C|C
150 GW2 Landrace G|G
151 GW34 Landrace C|C
152 GW37 Landrace C|C
153 GW58 Landrace C|C
154 GW59 Landrace C|C
155 GW9 Landrace C|C
156 s4 Weedy C|C
157 s6 Improved G|G
158 s7 Landrace N|N
159 s8 Landrace G|G
160 s9 Landrace G|G
161 J101 Landrace C|C
162 J103 Improved G|G
163 J112 Landrace C|C
164 J113 Improved G|G
165 J129 Improved G|G
166 J130 Improved G|G
167 J136 Improved G|G
168 J152 Improved G|G
169 J2 Landrace G|G
170 J20 Landrace G|G
171 J4 Landrace G|G
172 J42 Landrace G|G
173 J44 Landrace G|G
174 J49 Landrace C|C
175 J52 Landrace G|G
176 J53 Landrace C|C
177 J54 Landrace C|C
178 J57 Landrace G|G
179 J59 Landrace G|G
180 J64 Landrace N|N
181 J66 Landrace G|G
182 J67 Landrace G|G
183 J69 Landrace G|G
184 J87 Landrace C|C
185 J99 Landrace G|G
186 s45 Landrace G|G
187 s11 Improved N|N
188 s10 Improved G|G
189 s46 Improved G|G
190 s12 Improved G|G
191 s13 Landrace G|G
192 MHMD Landrace C|C
193 s14 Improved G|G
194 s15 Improved G|G
195 s34 Weedy C|C
196 s33 Wild sorghum C|C
197 s21 Wild sorghum G|G
198 s16 Wild sorghum C|C
199 s44 Improved G|G
200 s35 Landrace N|N
201 s31 Wild sorghum C|C
202 s17 Improved G|G
203 s18 Improved G|G
204 s20 Improved G|G
205 s19 Improved G|G
206 s22 Landrace C|C
207 s23 Landrace N|N
208 s24 Landrace C|C
209 s25 Landrace G|G
210 s26 Landrace N|N
211 s27 Landrace C|C
212 s28 Landrace G|G
213 s29 Landrace G|G
214 s30 Landrace G|G
215 SL25 Wild sorghum C|C
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum C|C
218 SL109 Wild sorghum C|C
219 SL12 Wild sorghum C|C
220 SL129 Wild sorghum C|C
221 SL130 Wild sorghum C|C
222 SL135 Wild sorghum G|C
223 SL136 Wild sorghum C|C
224 SL137 Wild sorghum C|C
225 SL138 Wild sorghum C|C
226 SL140 Wild sorghum C|C
227 SL141 Wild sorghum C|C
228 SL19 Wild sorghum C|C
229 SL28 Wild sorghum C|C
230 SL32 Wild sorghum *|*
231 SL35 Wild sorghum C|C
232 SL36 Wild sorghum C|C
233 SL37 Wild sorghum C|C
234 SL39 Wild sorghum G|G
235 SL41 Wild sorghum G|C
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum G|C
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum C|C
240 SL53 Wild sorghum C|C
241 SL62 Wild sorghum C|C
242 SL83 Wild sorghum G|G
243 SL97 Landrace C|C
244 s48 Improved G|G
245 Tu13 Wild sorghum C|C
246 Tu14 Wild sorghum C|C
247 Tu30 Wild sorghum C|C
248 Tu5 Wild sorghum C|C
249 WSC5 Landrace C|C
250 WSC15 Landrace C|C
251 WSC19 Landrace G|G
252 WSC30 Landrace G|G
253 WSC52 Landrace N|N
254 WSC6 Landrace C|C
255 WSC61 Landrace G|G
256 WSC71 Improved G|G
257 WSC72 Landrace G|G
258 WSC79 Landrace C|C
259 WSC94 Landrace G|G
260 WSC99 Landrace C|C
261 WSC100 Landrace C|C
262 WSC104 Landrace C|C
263 WSC105 Landrace G|G
264 WSC12 Landrace G|G
265 WSC13 Landrace G|G
266 WSC16 Landrace C|C
267 WSC17 Landrace G|G
268 WSC18 Landrace G|G
269 WSC20 Landrace G|G
270 WSC24 Landrace G|G
271 WSC25 Landrace C|C
272 WSC29 Landrace C|C
273 WSC31 Landrace G|G
274 WSC32 Landrace C|C
275 WSC34 Landrace G|G
276 WSC38 Landrace G|G
277 WSC39 Improved C|C
278 WSC40 Landrace G|G
279 WSC54 Landrace N|N
280 WSC56 Landrace C|C
281 WSC59 Landrace C|C
282 WSC68 Landrace G|G
283 WSC70 Landrace G|G
284 WSC73 Landrace G|G
285 WSC81 Landrace C|C
286 WSC85 Improved C|C
287 WSC91 Landrace C|C
288 WSC93 Landrace C|C
289 WSC98 Landrace C|C

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi170 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser