Variation ID : sbi2041

Variation Detail



Variation ID sbi2041
Type SNP
Position Chr01 38624-38624
Ref /Alleles T/ A
MAF T: 0.401
5' Flank GTCTTCTCCAACAACAAGACCTAAAAGACA
3' Flank CACTCTCTGCAAAATGGGTCTCGAAGAGAG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved A|A
2 103 Improved A|A
3 107 Improved A|A
4 11 Improved N|N
5 110 Improved T|T
6 123 Landrace A|A
7 131 Improved T|T
8 132 Improved A|A
9 135 Improved A|A
10 137 Improved T|T
11 138 Improved T|T
12 14 Improved T|T
13 140 Improved T|T
14 141 Improved N|N
15 144 Improved A|A
16 150 Improved N|N
17 154 Improved A|A
18 159 Landrace A|A
19 16 Improved T|T
20 161 Landrace T|T
21 167 Improved T|T
22 168 Improved T|T
23 170 Improved T|T
24 173 Improved A|A
25 175 Improved A|A
26 176 Improved T|T
27 182 Landrace A|A
28 186 Improved T|T
29 190 Improved T|T
30 192 Improved T|T
31 194 Improved A|A
32 195 Improved A|A
33 197 Improved A|A
34 J22 Landrace A|A
35 J26 Landrace T|T
36 J5 Landrace A|A
37 J50 Landrace T|T
38 2001 Landrace A|A
39 2005 Improved A|A
40 2008 Improved T|T
41 2009 Landrace A|A
42 201 Improved N|N
43 2010 Landrace A|A
44 2016 Improved N|N
45 2019 Improved T|T
46 202 Improved T|T
47 2021 Improved A|A
48 2023 Improved A|A
49 2026 Improved T|T
50 2029 Improved A|A
51 2030 Landrace A|A
52 2031 Landrace T|T
53 2036 Improved T|T
54 2037 Improved A|A
55 2038 Improved A|A
56 2039 Improved A|A
57 204 Improved T|T
58 2042 Improved A|A
59 2043 Improved A|A
60 2048 Improved A|A
61 2049 Improved T|T
62 205 Improved N|N
63 2050 Improved A|A
64 2052 Improved T|T
65 2054 Improved A|A
66 2056 Improved N|N
67 2059 Improved A|A
68 206 Improved T|T
69 2064 Improved A|A
70 2065 Improved T|T
71 2067 Improved A|A
72 2068 Improved A|A
73 2069 Improved A|A
74 2071 Improved A|A
75 2074 Improved A|A
76 2075 Improved T|T
77 2076 Improved T|T
78 2080 Improved A|A
79 2081 Improved T|T
80 2082 Improved A|A
81 2086 Improved A|A
82 2088 Improved T|T
83 260 Wild sorghum A|A
84 261 Improved T|T
85 262 Improved A|A
86 263 Improved T|T
87 286 Improved T|T
88 29 Improved A|A
89 3 Improved T|T
90 302546 S.propinquum A|A
91 31 Improved T|A
92 32 Improved T|T
93 34 Improved T|A
94 346 Landrace T|T
95 348 Wild sorghum A|A
96 353 Wild sorghum A|A
97 355 Wild sorghum A|A
98 357 Wild sorghum A|A
99 364 Wild sorghum A|A
100 367 Landrace T|T
101 s37 S.propinquum A|A
102 s38 S.propinquum A|A
103 370 Landrace A|A
104 377 Wild sorghum A|A
105 392 Wild sorghum A|A
106 394 Wild sorghum N|N
107 40 Improved T|T
108 42 Improved A|A
109 43 Improved N|N
110 45 Improved A|A
111 47 Improved N|N
112 48 Improved A|A
113 51 Improved A|A
114 53 Improved N|N
115 56 Improved T|T
116 61 Improved T|T
117 62 Improved T|T
118 66 Landrace A|A
119 67 Improved A|A
120 68 Improved T|T
121 70 Improved A|A
122 73 Improved T|T
123 75 Improved T|T
124 88 Improved A|A
125 89 Improved A|A
126 91 Improved T|A
127 92 Improved A|A
128 93 Improved A|A
129 94 Improved A|A
130 95 Improved N|N
131 96 Improved A|A
132 97 Improved A|A
133 s1 Improved T|T
134 s36 Wild sorghum A|A
135 s2 Landrace T|T
136 s3 Improved T|T
137 s32 Improved T|T
138 s43 Weedy T|T
139 s40 Landrace A|A
140 s41 Weedy A|A
141 s39 Landrace T|A
142 s42 Landrace A|A
143 s47 Improved N|N
144 s5 Landrace A|A
145 GW102 Landrace T|T
146 GW103 Landrace A|A
147 GW104 Landrace T|T
148 GW105 Landrace A|A
149 GW16 Landrace A|A
150 GW2 Landrace T|T
151 GW34 Landrace A|A
152 GW37 Landrace A|A
153 GW58 Landrace A|A
154 GW59 Landrace A|A
155 GW9 Landrace A|A
156 s4 Weedy A|A
157 s6 Improved T|T
158 s7 Landrace A|A
159 s8 Landrace T|T
160 s9 Landrace T|T
161 J101 Landrace A|A
162 J103 Improved T|T
163 J112 Landrace A|A
164 J113 Improved A|A
165 J129 Improved T|T
166 J130 Improved T|T
167 J136 Improved T|T
168 J152 Improved T|T
169 J2 Landrace N|N
170 J20 Landrace T|T
171 J4 Landrace T|T
172 J42 Landrace T|T
173 J44 Landrace T|T
174 J49 Landrace A|A
175 J52 Landrace T|T
176 J53 Landrace N|N
177 J54 Landrace A|A
178 J57 Landrace T|T
179 J59 Landrace T|T
180 J64 Landrace T|T
181 J66 Landrace T|T
182 J67 Landrace T|T
183 J69 Landrace T|T
184 J87 Landrace A|A
185 J99 Landrace T|T
186 s45 Landrace T|T
187 s11 Improved A|A
188 s10 Improved T|T
189 s46 Improved T|T
190 s12 Improved T|T
191 s13 Landrace T|T
192 MHMD Landrace A|A
193 s14 Improved T|T
194 s15 Improved T|T
195 s34 Weedy A|A
196 s33 Wild sorghum A|A
197 s21 Wild sorghum T|T
198 s16 Wild sorghum A|A
199 s44 Improved T|T
200 s35 Landrace A|A
201 s31 Wild sorghum A|A
202 s17 Improved T|T
203 s18 Improved T|T
204 s20 Improved T|T
205 s19 Improved T|T
206 s22 Landrace A|A
207 s23 Landrace A|A
208 s24 Landrace A|A
209 s25 Landrace T|T
210 s26 Landrace A|A
211 s27 Landrace A|A
212 s28 Landrace T|T
213 s29 Landrace A|A
214 s30 Landrace T|T
215 SL25 Wild sorghum A|A
216 SL105 Wild sorghum A|A
217 SL108 Wild sorghum A|A
218 SL109 Wild sorghum A|A
219 SL12 Wild sorghum A|A
220 SL129 Wild sorghum A|A
221 SL130 Wild sorghum A|A
222 SL135 Wild sorghum T|A
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum A|A
225 SL138 Wild sorghum A|A
226 SL140 Wild sorghum A|A
227 SL141 Wild sorghum A|A
228 SL19 Wild sorghum A|A
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum A|A
231 SL35 Wild sorghum A|A
232 SL36 Wild sorghum A|A
233 SL37 Wild sorghum A|A
234 SL39 Wild sorghum T|T
235 SL41 Wild sorghum A|A
236 SL43 Wild sorghum A|A
237 SL47 Wild sorghum A|A
238 SL49 Wild sorghum A|A
239 SL51 Wild sorghum A|A
240 SL53 Wild sorghum A|A
241 SL62 Wild sorghum A|A
242 SL83 Wild sorghum A|A
243 SL97 Landrace A|A
244 s48 Improved T|A
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum A|A
247 Tu30 Wild sorghum A|A
248 Tu5 Wild sorghum A|A
249 WSC5 Landrace A|A
250 WSC15 Landrace A|A
251 WSC19 Landrace T|T
252 WSC30 Landrace A|A
253 WSC52 Landrace A|A
254 WSC6 Landrace A|A
255 WSC61 Landrace T|T
256 WSC71 Improved T|T
257 WSC72 Landrace T|T
258 WSC79 Landrace A|A
259 WSC94 Landrace N|N
260 WSC99 Landrace A|A
261 WSC100 Landrace A|A
262 WSC104 Landrace A|A
263 WSC105 Landrace T|T
264 WSC12 Landrace T|T
265 WSC13 Landrace T|T
266 WSC16 Landrace A|A
267 WSC17 Landrace T|T
268 WSC18 Landrace T|T
269 WSC20 Landrace T|T
270 WSC24 Landrace T|T
271 WSC25 Landrace A|A
272 WSC29 Landrace A|A
273 WSC31 Landrace A|A
274 WSC32 Landrace A|A
275 WSC34 Landrace N|N
276 WSC38 Landrace A|A
277 WSC39 Improved A|A
278 WSC40 Landrace A|A
279 WSC54 Landrace A|A
280 WSC56 Landrace A|A
281 WSC59 Landrace A|A
282 WSC68 Landrace T|T
283 WSC70 Landrace T|T
284 WSC73 Landrace T|T
285 WSC81 Landrace A|A
286 WSC85 Improved A|A
287 WSC91 Landrace A|A
288 WSC93 Landrace A|A
289 WSC98 Landrace A|A

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi2041 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi2041 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi2041 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi2041 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi2041 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi2041 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser