Variation ID : sbi2066

Variation Detail



Variation ID sbi2066
Type SNP
Position Chr01 38914-38914
Ref /Alleles G/ A
MAF G: 0.454
5' Flank TAAATGGTCATCCAAATATAGCCATTGTCT
3' Flank TTCCGGATTTTTCGCTAGCCAAATATAGAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved A|A
2 103 Improved A|A
3 107 Improved G|G
4 11 Improved A|A
5 110 Improved G|G
6 123 Landrace N|N
7 131 Improved G|G
8 132 Improved A|A
9 135 Improved A|A
10 137 Improved G|G
11 138 Improved G|G
12 14 Improved G|G
13 140 Improved G|G
14 141 Improved A|A
15 144 Improved A|A
16 150 Improved A|A
17 154 Improved A|A
18 159 Landrace N|N
19 16 Improved G|G
20 161 Landrace G|G
21 167 Improved G|G
22 168 Improved G|G
23 170 Improved G|G
24 173 Improved A|A
25 175 Improved A|A
26 176 Improved G|G
27 182 Landrace A|A
28 186 Improved G|G
29 190 Improved G|G
30 192 Improved G|G
31 194 Improved A|A
32 195 Improved A|A
33 197 Improved A|A
34 J22 Landrace A|A
35 J26 Landrace G|G
36 J5 Landrace A|A
37 J50 Landrace G|G
38 2001 Landrace A|A
39 2005 Improved A|A
40 2008 Improved G|G
41 2009 Landrace A|A
42 201 Improved A|A
43 2010 Landrace A|A
44 2016 Improved A|A
45 2019 Improved G|G
46 202 Improved G|G
47 2021 Improved A|A
48 2023 Improved A|A
49 2026 Improved G|G
50 2029 Improved A|A
51 2030 Landrace A|A
52 2031 Landrace N|N
53 2036 Improved G|G
54 2037 Improved A|A
55 2038 Improved A|A
56 2039 Improved A|A
57 204 Improved A|A
58 2042 Improved G|G
59 2043 Improved A|A
60 2048 Improved G|G
61 2049 Improved G|G
62 205 Improved G|G
63 2050 Improved A|A
64 2052 Improved G|G
65 2054 Improved A|A
66 2056 Improved G|G
67 2059 Improved A|A
68 206 Improved G|G
69 2064 Improved A|A
70 2065 Improved G|G
71 2067 Improved A|A
72 2068 Improved A|A
73 2069 Improved A|A
74 2071 Improved A|A
75 2074 Improved A|A
76 2075 Improved G|G
77 2076 Improved G|G
78 2080 Improved A|A
79 2081 Improved G|G
80 2082 Improved A|A
81 2086 Improved A|A
82 2088 Improved G|G
83 260 Wild sorghum G|G
84 261 Improved G|G
85 262 Improved N|N
86 263 Improved G|G
87 286 Improved G|G
88 29 Improved A|A
89 3 Improved G|G
90 302546 S.propinquum N|N
91 31 Improved G|A
92 32 Improved G|G
93 34 Improved A|A
94 346 Landrace G|G
95 348 Wild sorghum A|A
96 353 Wild sorghum A|A
97 355 Wild sorghum A|A
98 357 Wild sorghum A|A
99 364 Wild sorghum A|A
100 367 Landrace G|G
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace G|G
104 377 Wild sorghum A|A
105 392 Wild sorghum A|A
106 394 Wild sorghum A|A
107 40 Improved G|G
108 42 Improved A|A
109 43 Improved G|A
110 45 Improved A|A
111 47 Improved G|G
112 48 Improved A|A
113 51 Improved A|A
114 53 Improved N|N
115 56 Improved G|G
116 61 Improved G|G
117 62 Improved N|N
118 66 Landrace G|G
119 67 Improved A|A
120 68 Improved G|G
121 70 Improved A|A
122 73 Improved G|G
123 75 Improved G|G
124 88 Improved A|A
125 89 Improved A|A
126 91 Improved A|A
127 92 Improved A|A
128 93 Improved A|A
129 94 Improved A|A
130 95 Improved A|A
131 96 Improved A|A
132 97 Improved A|A
133 s1 Improved G|G
134 s36 Wild sorghum A|A
135 s2 Landrace G|G
136 s3 Improved G|G
137 s32 Improved G|G
138 s43 Weedy G|G
139 s40 Landrace A|A
140 s41 Weedy A|A
141 s39 Landrace G|A
142 s42 Landrace A|A
143 s47 Improved G|G
144 s5 Landrace A|A
145 GW102 Landrace G|G
146 GW103 Landrace A|A
147 GW104 Landrace G|G
148 GW105 Landrace A|A
149 GW16 Landrace A|A
150 GW2 Landrace G|G
151 GW34 Landrace A|A
152 GW37 Landrace A|A
153 GW58 Landrace A|A
154 GW59 Landrace A|A
155 GW9 Landrace A|A
156 s4 Weedy A|A
157 s6 Improved G|G
158 s7 Landrace A|A
159 s8 Landrace G|G
160 s9 Landrace G|G
161 J101 Landrace A|A
162 J103 Improved G|G
163 J112 Landrace A|A
164 J113 Improved G|G
165 J129 Improved G|G
166 J130 Improved G|G
167 J136 Improved G|G
168 J152 Improved G|G
169 J2 Landrace G|G
170 J20 Landrace G|G
171 J4 Landrace G|G
172 J42 Landrace G|G
173 J44 Landrace G|G
174 J49 Landrace A|A
175 J52 Landrace G|G
176 J53 Landrace A|A
177 J54 Landrace A|A
178 J57 Landrace G|G
179 J59 Landrace G|G
180 J64 Landrace G|G
181 J66 Landrace G|G
182 J67 Landrace G|G
183 J69 Landrace G|G
184 J87 Landrace A|A
185 J99 Landrace N|N
186 s45 Landrace G|G
187 s11 Improved A|A
188 s10 Improved G|G
189 s46 Improved G|G
190 s12 Improved G|G
191 s13 Landrace G|G
192 MHMD Landrace A|A
193 s14 Improved G|G
194 s15 Improved G|G
195 s34 Weedy A|A
196 s33 Wild sorghum A|A
197 s21 Wild sorghum G|G
198 s16 Wild sorghum A|A
199 s44 Improved G|G
200 s35 Landrace A|A
201 s31 Wild sorghum A|A
202 s17 Improved G|G
203 s18 Improved G|G
204 s20 Improved G|G
205 s19 Improved G|G
206 s22 Landrace A|A
207 s23 Landrace A|A
208 s24 Landrace A|A
209 s25 Landrace G|G
210 s26 Landrace A|A
211 s27 Landrace A|A
212 s28 Landrace G|G
213 s29 Landrace G|G
214 s30 Landrace G|G
215 SL25 Wild sorghum A|A
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum A|A
218 SL109 Wild sorghum A|A
219 SL12 Wild sorghum A|A
220 SL129 Wild sorghum A|A
221 SL130 Wild sorghum A|A
222 SL135 Wild sorghum G|A
223 SL136 Wild sorghum A|A
224 SL137 Wild sorghum A|A
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum A|A
227 SL141 Wild sorghum A|A
228 SL19 Wild sorghum A|A
229 SL28 Wild sorghum A|A
230 SL32 Wild sorghum A|A
231 SL35 Wild sorghum A|A
232 SL36 Wild sorghum A|A
233 SL37 Wild sorghum A|A
234 SL39 Wild sorghum G|G
235 SL41 Wild sorghum A|A
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum G|G
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum A|A
240 SL53 Wild sorghum A|A
241 SL62 Wild sorghum G|A
242 SL83 Wild sorghum G|A
243 SL97 Landrace A|A
244 s48 Improved G|G
245 Tu13 Wild sorghum A|A
246 Tu14 Wild sorghum A|A
247 Tu30 Wild sorghum A|A
248 Tu5 Wild sorghum A|A
249 WSC5 Landrace A|A
250 WSC15 Landrace A|A
251 WSC19 Landrace G|G
252 WSC30 Landrace G|G
253 WSC52 Landrace N|N
254 WSC6 Landrace A|A
255 WSC61 Landrace G|G
256 WSC71 Improved G|G
257 WSC72 Landrace G|G
258 WSC79 Landrace A|A
259 WSC94 Landrace G|G
260 WSC99 Landrace A|A
261 WSC100 Landrace A|A
262 WSC104 Landrace A|A
263 WSC105 Landrace G|G
264 WSC12 Landrace G|G
265 WSC13 Landrace G|G
266 WSC16 Landrace A|A
267 WSC17 Landrace G|G
268 WSC18 Landrace G|G
269 WSC20 Landrace G|G
270 WSC24 Landrace G|G
271 WSC25 Landrace A|A
272 WSC29 Landrace A|A
273 WSC31 Landrace G|G
274 WSC32 Landrace A|A
275 WSC34 Landrace G|G
276 WSC38 Landrace N|N
277 WSC39 Improved A|A
278 WSC40 Landrace G|G
279 WSC54 Landrace A|A
280 WSC56 Landrace A|A
281 WSC59 Landrace A|A
282 WSC68 Landrace G|G
283 WSC70 Landrace G|G
284 WSC73 Landrace G|G
285 WSC81 Landrace A|A
286 WSC85 Improved A|A
287 WSC91 Landrace A|A
288 WSC93 Landrace A|A
289 WSC98 Landrace A|A

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi2066 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi2066 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi2066 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi2066 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi2066 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi2066 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser