Variation ID : sbi26

Variation Detail



Variation ID sbi26
Type SNP
Position Chr01 470-470
Ref /Alleles T/ G
MAF G: 0.004
5' Flank AAAATAAAAACTAATTGCCAATGGCGAAGC
3' Flank AAGCTAGATAGTATTTAGGGGGTGCAAATG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved *|*
2 103 Improved N|N
3 107 Improved *|*
4 11 Improved N|N
5 110 Improved T|T
6 123 Landrace *|*
7 131 Improved T|T
8 132 Improved *|*
9 135 Improved *|*
10 137 Improved T|T
11 138 Improved T|T
12 14 Improved N|N
13 140 Improved T|T
14 141 Improved *|*
15 144 Improved N|N
16 150 Improved *|*
17 154 Improved *|*
18 159 Landrace *|*
19 16 Improved T|T
20 161 Landrace T|T
21 167 Improved T|T
22 168 Improved T|T
23 170 Improved N|N
24 173 Improved N|N
25 175 Improved N|N
26 176 Improved N|N
27 182 Landrace *|*
28 186 Improved T|T
29 190 Improved T|T
30 192 Improved T|T
31 194 Improved N|N
32 195 Improved *|*
33 197 Improved N|N
34 J22 Landrace *|*
35 J26 Landrace N|N
36 J5 Landrace *|*
37 J50 Landrace *|*
38 2001 Landrace *|*
39 2005 Improved *|*
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved *|*
43 2010 Landrace *|*
44 2016 Improved N|N
45 2019 Improved T|T
46 202 Improved T|T
47 2021 Improved N|N
48 2023 Improved *|*
49 2026 Improved T|T
50 2029 Improved *|*
51 2030 Landrace N|N
52 2031 Landrace N|N
53 2036 Improved N|N
54 2037 Improved *|*
55 2038 Improved *|*
56 2039 Improved *|*
57 204 Improved N|N
58 2042 Improved *|*
59 2043 Improved *|*
60 2048 Improved *|*
61 2049 Improved *|*
62 205 Improved T|T
63 2050 Improved N|N
64 2052 Improved T|T
65 2054 Improved N|N
66 2056 Improved N|N
67 2059 Improved *|*
68 206 Improved T|T
69 2064 Improved *|*
70 2065 Improved T|T
71 2067 Improved *|*
72 2068 Improved *|*
73 2069 Improved *|*
74 2071 Improved *|*
75 2074 Improved *|*
76 2075 Improved T|T
77 2076 Improved T|T
78 2080 Improved N|N
79 2081 Improved N|N
80 2082 Improved N|N
81 2086 Improved *|*
82 2088 Improved T|T
83 260 Wild sorghum N|N
84 261 Improved N|N
85 262 Improved N|N
86 263 Improved N|N
87 286 Improved T|T
88 29 Improved *|*
89 3 Improved T|T
90 302546 S.propinquum N|N
91 31 Improved T|T
92 32 Improved T|T
93 34 Improved N|N
94 346 Landrace T|T
95 348 Wild sorghum *|*
96 353 Wild sorghum *|*
97 355 Wild sorghum *|*
98 357 Wild sorghum *|*
99 364 Wild sorghum *|*
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace *|*
104 377 Wild sorghum *|*
105 392 Wild sorghum *|*
106 394 Wild sorghum N|N
107 40 Improved T|T
108 42 Improved *|*
109 43 Improved T|T
110 45 Improved *|*
111 47 Improved N|N
112 48 Improved *|*
113 51 Improved *|*
114 53 Improved *|*
115 56 Improved *|*
116 61 Improved T|T
117 62 Improved T|T
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved T|T
121 70 Improved *|*
122 73 Improved T|T
123 75 Improved N|N
124 88 Improved *|*
125 89 Improved N|N
126 91 Improved *|*
127 92 Improved *|*
128 93 Improved *|*
129 94 Improved *|*
130 95 Improved N|N
131 96 Improved *|*
132 97 Improved *|*
133 s1 Improved *|*
134 s36 Wild sorghum *|*
135 s2 Landrace *|*
136 s3 Improved T|T
137 s32 Improved T|T
138 s43 Weedy *|*
139 s40 Landrace *|*
140 s41 Weedy *|*
141 s39 Landrace *|*
142 s42 Landrace *|*
143 s47 Improved T|T
144 s5 Landrace *|*
145 GW102 Landrace *|*
146 GW103 Landrace N|N
147 GW104 Landrace *|*
148 GW105 Landrace *|*
149 GW16 Landrace *|*
150 GW2 Landrace *|*
151 GW34 Landrace *|*
152 GW37 Landrace *|*
153 GW58 Landrace *|*
154 GW59 Landrace N|N
155 GW9 Landrace *|*
156 s4 Weedy *|*
157 s6 Improved T|T
158 s7 Landrace *|*
159 s8 Landrace T|T
160 s9 Landrace *|*
161 J101 Landrace *|*
162 J103 Improved T|T
163 J112 Landrace *|*
164 J113 Improved *|*
165 J129 Improved T|T
166 J130 Improved *|*
167 J136 Improved N|N
168 J152 Improved T|T
169 J2 Landrace *|*
170 J20 Landrace *|*
171 J4 Landrace N|N
172 J42 Landrace *|*
173 J44 Landrace *|*
174 J49 Landrace N|N
175 J52 Landrace N|N
176 J53 Landrace *|*
177 J54 Landrace *|*
178 J57 Landrace *|*
179 J59 Landrace *|*
180 J64 Landrace N|N
181 J66 Landrace *|*
182 J67 Landrace N|N
183 J69 Landrace *|*
184 J87 Landrace *|*
185 J99 Landrace N|N
186 s45 Landrace *|*
187 s11 Improved *|*
188 s10 Improved *|*
189 s46 Improved T|T
190 s12 Improved *|*
191 s13 Landrace T|T
192 MHMD Landrace *|*
193 s14 Improved T|T
194 s15 Improved T|T
195 s34 Weedy *|*
196 s33 Wild sorghum *|*
197 s21 Wild sorghum *|*
198 s16 Wild sorghum *|*
199 s44 Improved *|*
200 s35 Landrace *|*
201 s31 Wild sorghum *|*
202 s17 Improved T|T
203 s18 Improved T|T
204 s20 Improved T|T
205 s19 Improved T|T
206 s22 Landrace *|*
207 s23 Landrace *|*
208 s24 Landrace *|*
209 s25 Landrace *|*
210 s26 Landrace *|*
211 s27 Landrace *|*
212 s28 Landrace *|*
213 s29 Landrace *|*
214 s30 Landrace *|*
215 SL25 Wild sorghum *|*
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum *|*
218 SL109 Wild sorghum *|*
219 SL12 Wild sorghum *|*
220 SL129 Wild sorghum *|*
221 SL130 Wild sorghum *|*
222 SL135 Wild sorghum T|*
223 SL136 Wild sorghum *|*
224 SL137 Wild sorghum *|*
225 SL138 Wild sorghum *|*
226 SL140 Wild sorghum *|*
227 SL141 Wild sorghum *|*
228 SL19 Wild sorghum *|*
229 SL28 Wild sorghum *|*
230 SL32 Wild sorghum *|*
231 SL35 Wild sorghum *|*
232 SL36 Wild sorghum *|*
233 SL37 Wild sorghum *|*
234 SL39 Wild sorghum *|*
235 SL41 Wild sorghum N|N
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum *|*
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum G|G
240 SL53 Wild sorghum *|*
241 SL62 Wild sorghum *|*
242 SL83 Wild sorghum *|*
243 SL97 Landrace *|*
244 s48 Improved T|*
245 Tu13 Wild sorghum *|*
246 Tu14 Wild sorghum *|*
247 Tu30 Wild sorghum *|*
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace N|N
250 WSC15 Landrace N|N
251 WSC19 Landrace *|*
252 WSC30 Landrace *|*
253 WSC52 Landrace *|*
254 WSC6 Landrace *|*
255 WSC61 Landrace T|T
256 WSC71 Improved T|T
257 WSC72 Landrace T|T
258 WSC79 Landrace N|N
259 WSC94 Landrace *|*
260 WSC99 Landrace N|N
261 WSC100 Landrace *|*
262 WSC104 Landrace *|*
263 WSC105 Landrace T|T
264 WSC12 Landrace *|*
265 WSC13 Landrace *|*
266 WSC16 Landrace *|*
267 WSC17 Landrace *|*
268 WSC18 Landrace T|T
269 WSC20 Landrace *|*
270 WSC24 Landrace *|*
271 WSC25 Landrace *|*
272 WSC29 Landrace *|*
273 WSC31 Landrace *|*
274 WSC32 Landrace *|*
275 WSC34 Landrace *|*
276 WSC38 Landrace *|*
277 WSC39 Improved *|*
278 WSC40 Landrace *|*
279 WSC54 Landrace *|*
280 WSC56 Landrace *|*
281 WSC59 Landrace *|*
282 WSC68 Landrace T|T
283 WSC70 Landrace T|T
284 WSC73 Landrace T|T
285 WSC81 Landrace *|*
286 WSC85 Improved *|*
287 WSC91 Landrace *|*
288 WSC93 Landrace *|*
289 WSC98 Landrace *|*

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi26 Sobic.001G000100 upstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser