Variation ID : sbi33825238

Variation Detail



Variation ID sbi33825238
Type INDEL
Position Chr01 92-92
Ref /Alleles T/ TA
MAF TA: 0.017
5' Flank CTAAACCCTAAAGCCTAAACCCTAAAACCC
3' Flank AAACCCTAAACCCTAAACCCTAAACCCTAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved N|N
4 11 Improved N|N
5 110 Improved TA|TA
6 123 Landrace N|N
7 131 Improved T|T
8 132 Improved T|T
9 135 Improved N|N
10 137 Improved N|N
11 138 Improved N|N
12 14 Improved N|N
13 140 Improved N|N
14 141 Improved N|N
15 144 Improved N|N
16 150 Improved N|N
17 154 Improved N|N
18 159 Landrace N|N
19 16 Improved N|N
20 161 Landrace N|N
21 167 Improved N|N
22 168 Improved N|N
23 170 Improved N|N
24 173 Improved N|N
25 175 Improved N|N
26 176 Improved N|N
27 182 Landrace N|N
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved N|N
31 194 Improved N|N
32 195 Improved N|N
33 197 Improved N|N
34 J22 Landrace T|T
35 J26 Landrace N|N
36 J5 Landrace T|T
37 J50 Landrace N|N
38 2001 Landrace N|N
39 2005 Improved N|N
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace T|T
44 2016 Improved N|N
45 2019 Improved N|N
46 202 Improved N|N
47 2021 Improved N|N
48 2023 Improved N|N
49 2026 Improved T|T
50 2029 Improved N|N
51 2030 Landrace N|N
52 2031 Landrace N|N
53 2036 Improved N|N
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved N|N
57 204 Improved N|N
58 2042 Improved N|N
59 2043 Improved N|N
60 2048 Improved N|N
61 2049 Improved N|N
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved N|N
65 2054 Improved T|T
66 2056 Improved N|N
67 2059 Improved N|N
68 206 Improved N|N
69 2064 Improved N|N
70 2065 Improved T|T
71 2067 Improved N|N
72 2068 Improved N|N
73 2069 Improved N|N
74 2071 Improved N|N
75 2074 Improved N|N
76 2075 Improved N|N
77 2076 Improved N|N
78 2080 Improved N|N
79 2081 Improved N|N
80 2082 Improved T|T
81 2086 Improved N|N
82 2088 Improved N|N
83 260 Wild sorghum N|N
84 261 Improved N|N
85 262 Improved N|N
86 263 Improved N|N
87 286 Improved N|N
88 29 Improved N|N
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved N|N
92 32 Improved N|N
93 34 Improved N|N
94 346 Landrace N|N
95 348 Wild sorghum N|N
96 353 Wild sorghum N|N
97 355 Wild sorghum N|N
98 357 Wild sorghum N|N
99 364 Wild sorghum N|N
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum N|N
106 394 Wild sorghum N|N
107 40 Improved N|N
108 42 Improved N|N
109 43 Improved T|T
110 45 Improved N|N
111 47 Improved N|N
112 48 Improved N|N
113 51 Improved N|N
114 53 Improved N|N
115 56 Improved N|N
116 61 Improved N|N
117 62 Improved N|N
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved N|N
121 70 Improved T|T
122 73 Improved N|N
123 75 Improved N|N
124 88 Improved N|N
125 89 Improved N|N
126 91 Improved T|T
127 92 Improved N|N
128 93 Improved N|N
129 94 Improved N|N
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved N|N
133 s1 Improved T|T
134 s36 Wild sorghum T|T
135 s2 Landrace T|T
136 s3 Improved T|T
137 s32 Improved T|T
138 s43 Weedy N|N
139 s40 Landrace N|N
140 s41 Weedy N|N
141 s39 Landrace T|T
142 s42 Landrace N|N
143 s47 Improved N|N
144 s5 Landrace N|N
145 GW102 Landrace N|N
146 GW103 Landrace N|N
147 GW104 Landrace T|T
148 GW105 Landrace N|N
149 GW16 Landrace N|N
150 GW2 Landrace N|N
151 GW34 Landrace N|N
152 GW37 Landrace N|N
153 GW58 Landrace T|T
154 GW59 Landrace N|N
155 GW9 Landrace T|T
156 s4 Weedy N|N
157 s6 Improved T|T
158 s7 Landrace N|N
159 s8 Landrace T|T
160 s9 Landrace N|N
161 J101 Landrace N|N
162 J103 Improved N|N
163 J112 Landrace N|N
164 J113 Improved N|N
165 J129 Improved T|T
166 J130 Improved N|N
167 J136 Improved N|N
168 J152 Improved T|T
169 J2 Landrace N|N
170 J20 Landrace N|N
171 J4 Landrace N|N
172 J42 Landrace N|N
173 J44 Landrace N|N
174 J49 Landrace N|N
175 J52 Landrace N|N
176 J53 Landrace N|N
177 J54 Landrace N|N
178 J57 Landrace T|T
179 J59 Landrace N|N
180 J64 Landrace N|N
181 J66 Landrace N|N
182 J67 Landrace N|N
183 J69 Landrace N|N
184 J87 Landrace N|N
185 J99 Landrace N|N
186 s45 Landrace N|N
187 s11 Improved N|N
188 s10 Improved T|T
189 s46 Improved N|N
190 s12 Improved N|N
191 s13 Landrace T|T
192 MHMD Landrace T|T
193 s14 Improved T|T
194 s15 Improved N|N
195 s34 Weedy N|N
196 s33 Wild sorghum N|N
197 s21 Wild sorghum N|N
198 s16 Wild sorghum N|N
199 s44 Improved T|T
200 s35 Landrace T|T
201 s31 Wild sorghum T|T
202 s17 Improved T|T
203 s18 Improved N|N
204 s20 Improved T|T
205 s19 Improved N|N
206 s22 Landrace N|N
207 s23 Landrace N|N
208 s24 Landrace N|N
209 s25 Landrace T|T
210 s26 Landrace N|N
211 s27 Landrace N|N
212 s28 Landrace N|N
213 s29 Landrace T|T
214 s30 Landrace T|T
215 SL25 Wild sorghum T|T
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum N|N
221 SL130 Wild sorghum N|N
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum N|N
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum T|T
227 SL141 Wild sorghum T|T
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum T|T
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum T|T
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum N|N
235 SL41 Wild sorghum N|N
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum N|N
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum T|T
241 SL62 Wild sorghum N|N
242 SL83 Wild sorghum N|N
243 SL97 Landrace N|N
244 s48 Improved T|T
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace N|N
250 WSC15 Landrace N|N
251 WSC19 Landrace N|N
252 WSC30 Landrace N|N
253 WSC52 Landrace T|T
254 WSC6 Landrace N|N
255 WSC61 Landrace N|N
256 WSC71 Improved N|N
257 WSC72 Landrace T|T
258 WSC79 Landrace N|N
259 WSC94 Landrace N|N
260 WSC99 Landrace T|T
261 WSC100 Landrace N|N
262 WSC104 Landrace N|N
263 WSC105 Landrace T|T
264 WSC12 Landrace N|N
265 WSC13 Landrace N|N
266 WSC16 Landrace N|N
267 WSC17 Landrace N|N
268 WSC18 Landrace T|T
269 WSC20 Landrace T|T
270 WSC24 Landrace N|N
271 WSC25 Landrace T|T
272 WSC29 Landrace N|N
273 WSC31 Landrace N|N
274 WSC32 Landrace N|N
275 WSC34 Landrace N|N
276 WSC38 Landrace N|N
277 WSC39 Improved N|N
278 WSC40 Landrace T|T
279 WSC54 Landrace N|N
280 WSC56 Landrace T|T
281 WSC59 Landrace T|T
282 WSC68 Landrace N|N
283 WSC70 Landrace N|N
284 WSC73 Landrace T|T
285 WSC81 Landrace N|N
286 WSC85 Improved T|T
287 WSC91 Landrace T|T
288 WSC93 Landrace T|T
289 WSC98 Landrace N|N

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825238 Sobic.001G000100 upstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser