Variation ID : sbi33825250

Variation Detail



Variation ID sbi33825250
Type INDEL
Position Chr01 495-509
Ref /Alleles CAAATGCACCCCCAA/ C or *
MAF C: 0.016
5' Flank GAAGCTAAGCTAGATAGTATTTAGGGGGTG
3' Flank ATTTTGTAAAAATAGTGGTTTTTCTAGATT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
2 103 Improved N|N
3 107 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
4 11 Improved N|N
5 110 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
6 123 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
7 131 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
8 132 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
9 135 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
10 137 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
11 138 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
12 14 Improved N|N
13 140 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
14 141 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
15 144 Improved N|N
16 150 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
17 154 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
18 159 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
19 16 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
20 161 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
21 167 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
22 168 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
23 170 Improved N|N
24 173 Improved N|N
25 175 Improved N|N
26 176 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
27 182 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
28 186 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
29 190 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
30 192 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
31 194 Improved N|N
32 195 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
33 197 Improved N|N
34 J22 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
35 J26 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
36 J5 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
37 J50 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
38 2001 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
39 2005 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
43 2010 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
44 2016 Improved N|N
45 2019 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
46 202 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
47 2021 Improved N|N
48 2023 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
49 2026 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
50 2029 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
51 2030 Landrace N|N
52 2031 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
53 2036 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
54 2037 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
55 2038 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
56 2039 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
57 204 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
58 2042 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
59 2043 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
60 2048 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
61 2049 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
65 2054 Improved N|N
66 2056 Improved N|N
67 2059 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
68 206 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
69 2064 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
70 2065 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
71 2067 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
72 2068 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
73 2069 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
74 2071 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
75 2074 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
76 2075 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
77 2076 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
78 2080 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
79 2081 Improved N|N
80 2082 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
81 2086 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
82 2088 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
83 260 Wild sorghum N|N
84 261 Improved N|N
85 262 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
86 263 Improved N|N
87 286 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
88 29 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
89 3 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
90 302546 S.propinquum N|N
91 31 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
92 32 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
93 34 Improved N|N
94 346 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
95 348 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
96 353 Wild sorghum C|C
97 355 Wild sorghum C|C
98 357 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
99 364 Wild sorghum N|N
100 367 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
104 377 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
105 392 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
106 394 Wild sorghum N|N
107 40 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
108 42 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
109 43 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
110 45 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
111 47 Improved N|N
112 48 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
113 51 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
114 53 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
115 56 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
116 61 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
117 62 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
121 70 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
122 73 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
123 75 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
124 88 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
125 89 Improved N|N
126 91 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
127 92 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
128 93 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
129 94 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
130 95 Improved N|N
131 96 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
132 97 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
133 s1 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
134 s36 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
135 s2 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
136 s3 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
137 s32 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
138 s43 Weedy CAAATGCACCCCCAA|CAAATGCACCCCCAA
139 s40 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
140 s41 Weedy CAAATGCACCCCCAA|CAAATGCACCCCCAA
141 s39 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
142 s42 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
143 s47 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
144 s5 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
145 GW102 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
146 GW103 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
147 GW104 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
148 GW105 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
149 GW16 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
150 GW2 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
151 GW34 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
152 GW37 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
153 GW58 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
154 GW59 Landrace N|N
155 GW9 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
156 s4 Weedy CAAATGCACCCCCAA|CAAATGCACCCCCAA
157 s6 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
158 s7 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
159 s8 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
160 s9 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
161 J101 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
162 J103 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
163 J112 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
164 J113 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
165 J129 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
166 J130 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
167 J136 Improved N|N
168 J152 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
169 J2 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
170 J20 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
171 J4 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
172 J42 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
173 J44 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
174 J49 Landrace N|N
175 J52 Landrace N|N
176 J53 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
177 J54 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
178 J57 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
179 J59 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
180 J64 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
181 J66 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
182 J67 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
183 J69 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
184 J87 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
185 J99 Landrace N|N
186 s45 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
187 s11 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
188 s10 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
189 s46 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
190 s12 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
191 s13 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
192 MHMD Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
193 s14 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
194 s15 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
195 s34 Weedy CAAATGCACCCCCAA|CAAATGCACCCCCAA
196 s33 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
197 s21 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
198 s16 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
199 s44 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
200 s35 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
201 s31 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
202 s17 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
203 s18 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
204 s20 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
205 s19 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
206 s22 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
207 s23 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
208 s24 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
209 s25 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
210 s26 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
211 s27 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
212 s28 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
213 s29 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
214 s30 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
215 SL25 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
218 SL109 Wild sorghum *|*
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
221 SL130 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
222 SL135 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
223 SL136 Wild sorghum C|C
224 SL137 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
225 SL138 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
226 SL140 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
227 SL141 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
228 SL19 Wild sorghum C|C
229 SL28 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
232 SL36 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
233 SL37 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
234 SL39 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
235 SL41 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
236 SL43 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
237 SL47 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
238 SL49 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
241 SL62 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
242 SL83 Wild sorghum N|N
243 SL97 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
244 s48 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
247 Tu30 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
248 Tu5 Wild sorghum CAAATGCACCCCCAA|CAAATGCACCCCCAA
249 WSC5 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
250 WSC15 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
251 WSC19 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
252 WSC30 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
253 WSC52 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
254 WSC6 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
255 WSC61 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
256 WSC71 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
257 WSC72 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
258 WSC79 Landrace N|N
259 WSC94 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
260 WSC99 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
261 WSC100 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
262 WSC104 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
263 WSC105 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
264 WSC12 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
265 WSC13 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
266 WSC16 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
267 WSC17 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
268 WSC18 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
269 WSC20 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
270 WSC24 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
271 WSC25 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
272 WSC29 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
273 WSC31 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
274 WSC32 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
275 WSC34 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
276 WSC38 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
277 WSC39 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
278 WSC40 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
279 WSC54 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
280 WSC56 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
281 WSC59 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
282 WSC68 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
283 WSC70 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
284 WSC73 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
285 WSC81 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
286 WSC85 Improved CAAATGCACCCCCAA|CAAATGCACCCCCAA
287 WSC91 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
288 WSC93 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA
289 WSC98 Landrace CAAATGCACCCCCAA|CAAATGCACCCCCAA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825250 Sobic.001G000100 upstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser