sorgsd

Variation ID : sbi33825253

Variation Detail

Variation ID	sbi33825253
Type	INDEL
Position	Chr01 515-517
Ref /Alleles	GTA/ G
MAF	G: 0.008
5' Flank	TTAGGGGGTGCAAATGCACCCCCAAATTTT
3' Flank	AAAATAGTGGTTTTTCTAGATTTTCACCAT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GTA\|GTA
2	103	Improved	N\|N
3	107	Improved	GTA\|GTA
4	11	Improved	N\|N
5	110	Improved	GTA\|GTA
6	123	Landrace	GTA\|GTA
7	131	Improved	GTA\|GTA
8	132	Improved	GTA\|GTA
9	135	Improved	GTA\|GTA
10	137	Improved	GTA\|GTA
11	138	Improved	GTA\|GTA
12	14	Improved	N\|N
13	140	Improved	GTA\|GTA
14	141	Improved	GTA\|GTA
15	144	Improved	N\|N
16	150	Improved	GTA\|GTA
17	154	Improved	GTA\|GTA
18	159	Landrace	GTA\|GTA
19	16	Improved	GTA\|GTA
20	161	Landrace	GTA\|GTA
21	167	Improved	GTA\|GTA
22	168	Improved	GTA\|GTA
23	170	Improved	N\|N
24	173	Improved	N\|N
25	175	Improved	GTA\|GTA
26	176	Improved	GTA\|GTA
27	182	Landrace	GTA\|GTA
28	186	Improved	GTA\|GTA
29	190	Improved	GTA\|GTA
30	192	Improved	GTA\|GTA
31	194	Improved	N\|N
32	195	Improved	GTA\|GTA
33	197	Improved	N\|N
34	J22	Landrace	GTA\|GTA
35	J26	Landrace	GTA\|GTA
36	J5	Landrace	GTA\|GTA
37	J50	Landrace	GTA\|GTA
38	2001	Landrace	GTA\|GTA
39	2005	Improved	GTA\|GTA
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	GTA\|GTA
43	2010	Landrace	GTA\|GTA
44	2016	Improved	N\|N
45	2019	Improved	GTA\|GTA
46	202	Improved	GTA\|GTA
47	2021	Improved	N\|N
48	2023	Improved	GTA\|GTA
49	2026	Improved	GTA\|GTA
50	2029	Improved	GTA\|GTA
51	2030	Landrace	N\|N
52	2031	Landrace	GTA\|GTA
53	2036	Improved	GTA\|GTA
54	2037	Improved	GTA\|GTA
55	2038	Improved	GTA\|GTA
56	2039	Improved	GTA\|GTA
57	204	Improved	GTA\|GTA
58	2042	Improved	GTA\|GTA
59	2043	Improved	GTA\|GTA
60	2048	Improved	GTA\|GTA
61	2049	Improved	GTA\|GTA
62	205	Improved	N\|N
63	2050	Improved	N\|N
64	2052	Improved	GTA\|GTA
65	2054	Improved	N\|N
66	2056	Improved	N\|N
67	2059	Improved	GTA\|GTA
68	206	Improved	GTA\|GTA
69	2064	Improved	GTA\|GTA
70	2065	Improved	GTA\|GTA
71	2067	Improved	GTA\|GTA
72	2068	Improved	GTA\|GTA
73	2069	Improved	GTA\|GTA
74	2071	Improved	GTA\|GTA
75	2074	Improved	GTA\|GTA
76	2075	Improved	GTA\|GTA
77	2076	Improved	GTA\|GTA
78	2080	Improved	GTA\|GTA
79	2081	Improved	N\|N
80	2082	Improved	GTA\|GTA
81	2086	Improved	GTA\|GTA
82	2088	Improved	GTA\|GTA
83	260	Wild sorghum	N\|N
84	261	Improved	N\|N
85	262	Improved	GTA\|GTA
86	263	Improved	N\|N
87	286	Improved	GTA\|GTA
88	29	Improved	GTA\|GTA
89	3	Improved	GTA\|GTA
90	302546	S.propinquum	N\|N
91	31	Improved	GTA\|GTA
92	32	Improved	GTA\|GTA
93	34	Improved	N\|N
94	346	Landrace	GTA\|GTA
95	348	Wild sorghum	GTA\|GTA
96	353	Wild sorghum	GTA\|GTA
97	355	Wild sorghum	GTA\|GTA
98	357	Wild sorghum	GTA\|GTA
99	364	Wild sorghum	GTA\|GTA
100	367	Landrace	GTA\|GTA
101	s37	S.propinquum	N\|N
102	s38	S.propinquum	N\|N
103	370	Landrace	GTA\|GTA
104	377	Wild sorghum	GTA\|G
105	392	Wild sorghum	GTA\|GTA
106	394	Wild sorghum	GTA\|G
107	40	Improved	GTA\|GTA
108	42	Improved	GTA\|GTA
109	43	Improved	GTA\|GTA
110	45	Improved	GTA\|GTA
111	47	Improved	GTA\|GTA
112	48	Improved	GTA\|GTA
113	51	Improved	GTA\|GTA
114	53	Improved	GTA\|GTA
115	56	Improved	GTA\|GTA
116	61	Improved	GTA\|GTA
117	62	Improved	GTA\|GTA
118	66	Landrace	N\|N
119	67	Improved	N\|N
120	68	Improved	GTA\|GTA
121	70	Improved	GTA\|GTA
122	73	Improved	GTA\|GTA
123	75	Improved	GTA\|GTA
124	88	Improved	GTA\|GTA
125	89	Improved	N\|N
126	91	Improved	GTA\|GTA
127	92	Improved	GTA\|GTA
128	93	Improved	GTA\|GTA
129	94	Improved	GTA\|GTA
130	95	Improved	N\|N
131	96	Improved	GTA\|GTA
132	97	Improved	GTA\|GTA
133	s1	Improved	GTA\|GTA
134	s36	Wild sorghum	GTA\|GTA
135	s2	Landrace	GTA\|GTA
136	s3	Improved	GTA\|GTA
137	s32	Improved	GTA\|GTA
138	s43	Weedy	GTA\|GTA
139	s40	Landrace	GTA\|GTA
140	s41	Weedy	GTA\|GTA
141	s39	Landrace	GTA\|GTA
142	s42	Landrace	GTA\|GTA
143	s47	Improved	GTA\|GTA
144	s5	Landrace	GTA\|GTA
145	GW102	Landrace	GTA\|GTA
146	GW103	Landrace	GTA\|GTA
147	GW104	Landrace	GTA\|GTA
148	GW105	Landrace	GTA\|GTA
149	GW16	Landrace	GTA\|GTA
150	GW2	Landrace	GTA\|GTA
151	GW34	Landrace	GTA\|GTA
152	GW37	Landrace	GTA\|GTA
153	GW58	Landrace	GTA\|GTA
154	GW59	Landrace	N\|N
155	GW9	Landrace	GTA\|GTA
156	s4	Weedy	GTA\|GTA
157	s6	Improved	GTA\|GTA
158	s7	Landrace	GTA\|GTA
159	s8	Landrace	GTA\|GTA
160	s9	Landrace	GTA\|GTA
161	J101	Landrace	GTA\|GTA
162	J103	Improved	GTA\|GTA
163	J112	Landrace	GTA\|GTA
164	J113	Improved	GTA\|GTA
165	J129	Improved	GTA\|GTA
166	J130	Improved	GTA\|GTA
167	J136	Improved	N\|N
168	J152	Improved	GTA\|GTA
169	J2	Landrace	GTA\|GTA
170	J20	Landrace	GTA\|GTA
171	J4	Landrace	GTA\|GTA
172	J42	Landrace	GTA\|GTA
173	J44	Landrace	GTA\|GTA
174	J49	Landrace	N\|N
175	J52	Landrace	N\|N
176	J53	Landrace	GTA\|GTA
177	J54	Landrace	GTA\|GTA
178	J57	Landrace	GTA\|GTA
179	J59	Landrace	GTA\|GTA
180	J64	Landrace	GTA\|GTA
181	J66	Landrace	GTA\|GTA
182	J67	Landrace	GTA\|GTA
183	J69	Landrace	GTA\|GTA
184	J87	Landrace	GTA\|GTA
185	J99	Landrace	N\|N
186	s45	Landrace	GTA\|GTA
187	s11	Improved	GTA\|GTA
188	s10	Improved	GTA\|GTA
189	s46	Improved	GTA\|GTA
190	s12	Improved	GTA\|GTA
191	s13	Landrace	GTA\|GTA
192	MHMD	Landrace	GTA\|GTA
193	s14	Improved	GTA\|GTA
194	s15	Improved	GTA\|GTA
195	s34	Weedy	GTA\|GTA
196	s33	Wild sorghum	GTA\|GTA
197	s21	Wild sorghum	GTA\|GTA
198	s16	Wild sorghum	GTA\|G
199	s44	Improved	GTA\|GTA
200	s35	Landrace	GTA\|GTA
201	s31	Wild sorghum	GTA\|GTA
202	s17	Improved	GTA\|GTA
203	s18	Improved	GTA\|GTA
204	s20	Improved	GTA\|GTA
205	s19	Improved	GTA\|GTA
206	s22	Landrace	GTA\|GTA
207	s23	Landrace	GTA\|GTA
208	s24	Landrace	GTA\|GTA
209	s25	Landrace	GTA\|GTA
210	s26	Landrace	GTA\|GTA
211	s27	Landrace	GTA\|GTA
212	s28	Landrace	GTA\|GTA
213	s29	Landrace	GTA\|GTA
214	s30	Landrace	GTA\|GTA
215	SL25	Wild sorghum	GTA\|GTA
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	GTA\|GTA
218	SL109	Wild sorghum	GTA\|GTA
219	SL12	Wild sorghum	N\|N
220	SL129	Wild sorghum	GTA\|GTA
221	SL130	Wild sorghum	GTA\|GTA
222	SL135	Wild sorghum	GTA\|GTA
223	SL136	Wild sorghum	GTA\|GTA
224	SL137	Wild sorghum	GTA\|GTA
225	SL138	Wild sorghum	GTA\|GTA
226	SL140	Wild sorghum	GTA\|GTA
227	SL141	Wild sorghum	GTA\|GTA
228	SL19	Wild sorghum	GTA\|GTA
229	SL28	Wild sorghum	GTA\|GTA
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	GTA\|GTA
232	SL36	Wild sorghum	GTA\|GTA
233	SL37	Wild sorghum	GTA\|GTA
234	SL39	Wild sorghum	GTA\|GTA
235	SL41	Wild sorghum	GTA\|GTA
236	SL43	Wild sorghum	GTA\|GTA
237	SL47	Wild sorghum	GTA\|GTA
238	SL49	Wild sorghum	GTA\|GTA
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	GTA\|GTA
241	SL62	Wild sorghum	GTA\|GTA
242	SL83	Wild sorghum	GTA\|GTA
243	SL97	Landrace	GTA\|G
244	s48	Improved	GTA\|GTA
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	GTA\|GTA
247	Tu30	Wild sorghum	GTA\|GTA
248	Tu5	Wild sorghum	GTA\|GTA
249	WSC5	Landrace	GTA\|GTA
250	WSC15	Landrace	GTA\|GTA
251	WSC19	Landrace	GTA\|GTA
252	WSC30	Landrace	GTA\|GTA
253	WSC52	Landrace	GTA\|GTA
254	WSC6	Landrace	GTA\|GTA
255	WSC61	Landrace	GTA\|GTA
256	WSC71	Improved	GTA\|GTA
257	WSC72	Landrace	GTA\|GTA
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	GTA\|GTA
260	WSC99	Landrace	GTA\|GTA
261	WSC100	Landrace	GTA\|GTA
262	WSC104	Landrace	GTA\|GTA
263	WSC105	Landrace	GTA\|GTA
264	WSC12	Landrace	GTA\|GTA
265	WSC13	Landrace	GTA\|GTA
266	WSC16	Landrace	GTA\|GTA
267	WSC17	Landrace	GTA\|GTA
268	WSC18	Landrace	GTA\|GTA
269	WSC20	Landrace	GTA\|GTA
270	WSC24	Landrace	GTA\|GTA
271	WSC25	Landrace	GTA\|GTA
272	WSC29	Landrace	GTA\|GTA
273	WSC31	Landrace	GTA\|GTA
274	WSC32	Landrace	GTA\|GTA
275	WSC34	Landrace	GTA\|GTA
276	WSC38	Landrace	GTA\|GTA
277	WSC39	Improved	GTA\|GTA
278	WSC40	Landrace	GTA\|GTA
279	WSC54	Landrace	GTA\|GTA
280	WSC56	Landrace	GTA\|GTA
281	WSC59	Landrace	GTA\|GTA
282	WSC68	Landrace	N\|N
283	WSC70	Landrace	GTA\|GTA
284	WSC73	Landrace	GTA\|GTA
285	WSC81	Landrace	GTA\|GTA
286	WSC85	Improved	GTA\|GTA
287	WSC91	Landrace	GTA\|GTA
288	WSC93	Landrace	GTA\|GTA
289	WSC98	Landrace	GTA\|GTA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825253	Sobic.001G000100	upstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

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