sorgsd

Variation ID : sbi33825258

Variation Detail

Variation ID	sbi33825258
Type	INDEL
Position	Chr01 711-716
Ref /Alleles	TCAAAG/ T
MAF	T: 0.006
5' Flank	TTCTATAAACAAATAAAAGTGCTATATTAG
3' Flank	CTAATTTTTTTTCGAACTGAACAAGGTCTT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	TCAAAG\|TCAAAG
2	103	Improved	TCAAAG\|TCAAAG
3	107	Improved	N\|N
4	11	Improved	TCAAAG\|TCAAAG
5	110	Improved	TCAAAG\|TCAAAG
6	123	Landrace	TCAAAG\|TCAAAG
7	131	Improved	TCAAAG\|TCAAAG
8	132	Improved	TCAAAG\|TCAAAG
9	135	Improved	TCAAAG\|TCAAAG
10	137	Improved	TCAAAG\|TCAAAG
11	138	Improved	TCAAAG\|TCAAAG
12	14	Improved	TCAAAG\|TCAAAG
13	140	Improved	TCAAAG\|TCAAAG
14	141	Improved	TCAAAG\|TCAAAG
15	144	Improved	TCAAAG\|TCAAAG
16	150	Improved	TCAAAG\|TCAAAG
17	154	Improved	TCAAAG\|TCAAAG
18	159	Landrace	N\|N
19	16	Improved	TCAAAG\|TCAAAG
20	161	Landrace	TCAAAG\|TCAAAG
21	167	Improved	TCAAAG\|TCAAAG
22	168	Improved	TCAAAG\|TCAAAG
23	170	Improved	TCAAAG\|TCAAAG
24	173	Improved	TCAAAG\|TCAAAG
25	175	Improved	TCAAAG\|TCAAAG
26	176	Improved	TCAAAG\|TCAAAG
27	182	Landrace	N\|N
28	186	Improved	TCAAAG\|TCAAAG
29	190	Improved	TCAAAG\|TCAAAG
30	192	Improved	TCAAAG\|TCAAAG
31	194	Improved	TCAAAG\|TCAAAG
32	195	Improved	TCAAAG\|TCAAAG
33	197	Improved	TCAAAG\|TCAAAG
34	J22	Landrace	TCAAAG\|TCAAAG
35	J26	Landrace	TCAAAG\|TCAAAG
36	J5	Landrace	TCAAAG\|TCAAAG
37	J50	Landrace	TCAAAG\|TCAAAG
38	2001	Landrace	TCAAAG\|TCAAAG
39	2005	Improved	TCAAAG\|TCAAAG
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	TCAAAG\|TCAAAG
43	2010	Landrace	TCAAAG\|TCAAAG
44	2016	Improved	TCAAAG\|TCAAAG
45	2019	Improved	TCAAAG\|TCAAAG
46	202	Improved	TCAAAG\|TCAAAG
47	2021	Improved	N\|N
48	2023	Improved	TCAAAG\|TCAAAG
49	2026	Improved	TCAAAG\|TCAAAG
50	2029	Improved	TCAAAG\|TCAAAG
51	2030	Landrace	TCAAAG\|TCAAAG
52	2031	Landrace	TCAAAG\|TCAAAG
53	2036	Improved	TCAAAG\|TCAAAG
54	2037	Improved	TCAAAG\|TCAAAG
55	2038	Improved	TCAAAG\|TCAAAG
56	2039	Improved	TCAAAG\|TCAAAG
57	204	Improved	TCAAAG\|TCAAAG
58	2042	Improved	N\|N
59	2043	Improved	N\|N
60	2048	Improved	TCAAAG\|TCAAAG
61	2049	Improved	TCAAAG\|TCAAAG
62	205	Improved	TCAAAG\|TCAAAG
63	2050	Improved	TCAAAG\|TCAAAG
64	2052	Improved	TCAAAG\|TCAAAG
65	2054	Improved	TCAAAG\|TCAAAG
66	2056	Improved	TCAAAG\|TCAAAG
67	2059	Improved	N\|N
68	206	Improved	TCAAAG\|TCAAAG
69	2064	Improved	TCAAAG\|TCAAAG
70	2065	Improved	TCAAAG\|TCAAAG
71	2067	Improved	TCAAAG\|TCAAAG
72	2068	Improved	TCAAAG\|TCAAAG
73	2069	Improved	TCAAAG\|TCAAAG
74	2071	Improved	TCAAAG\|TCAAAG
75	2074	Improved	TCAAAG\|TCAAAG
76	2075	Improved	TCAAAG\|TCAAAG
77	2076	Improved	TCAAAG\|TCAAAG
78	2080	Improved	TCAAAG\|TCAAAG
79	2081	Improved	N\|N
80	2082	Improved	TCAAAG\|TCAAAG
81	2086	Improved	TCAAAG\|TCAAAG
82	2088	Improved	TCAAAG\|TCAAAG
83	260	Wild sorghum	N\|N
84	261	Improved	TCAAAG\|TCAAAG
85	262	Improved	TCAAAG\|TCAAAG
86	263	Improved	TCAAAG\|TCAAAG
87	286	Improved	TCAAAG\|TCAAAG
88	29	Improved	TCAAAG\|TCAAAG
89	3	Improved	TCAAAG\|TCAAAG
90	302546	S.propinquum	N\|N
91	31	Improved	TCAAAG\|TCAAAG
92	32	Improved	TCAAAG\|TCAAAG
93	34	Improved	TCAAAG\|TCAAAG
94	346	Landrace	TCAAAG\|TCAAAG
95	348	Wild sorghum	N\|N
96	353	Wild sorghum	TCAAAG\|TCAAAG
97	355	Wild sorghum	TCAAAG\|TCAAAG
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	TCAAAG\|TCAAAG
100	367	Landrace	TCAAAG\|TCAAAG
101	s37	S.propinquum	TCAAAG\|TCAAAG
102	s38	S.propinquum	TCAAAG\|TCAAAG
103	370	Landrace	TCAAAG\|TCAAAG
104	377	Wild sorghum	TCAAAG\|TCAAAG
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	N\|N
107	40	Improved	TCAAAG\|TCAAAG
108	42	Improved	TCAAAG\|TCAAAG
109	43	Improved	TCAAAG\|TCAAAG
110	45	Improved	TCAAAG\|TCAAAG
111	47	Improved	N\|N
112	48	Improved	TCAAAG\|TCAAAG
113	51	Improved	TCAAAG\|TCAAAG
114	53	Improved	TCAAAG\|TCAAAG
115	56	Improved	TCAAAG\|TCAAAG
116	61	Improved	TCAAAG\|TCAAAG
117	62	Improved	TCAAAG\|TCAAAG
118	66	Landrace	N\|N
119	67	Improved	N\|N
120	68	Improved	TCAAAG\|TCAAAG
121	70	Improved	TCAAAG\|TCAAAG
122	73	Improved	TCAAAG\|TCAAAG
123	75	Improved	TCAAAG\|TCAAAG
124	88	Improved	TCAAAG\|TCAAAG
125	89	Improved	TCAAAG\|TCAAAG
126	91	Improved	N\|N
127	92	Improved	TCAAAG\|TCAAAG
128	93	Improved	N\|N
129	94	Improved	TCAAAG\|TCAAAG
130	95	Improved	TCAAAG\|TCAAAG
131	96	Improved	TCAAAG\|TCAAAG
132	97	Improved	TCAAAG\|TCAAAG
133	s1	Improved	TCAAAG\|TCAAAG
134	s36	Wild sorghum	TCAAAG\|TCAAAG
135	s2	Landrace	TCAAAG\|TCAAAG
136	s3	Improved	TCAAAG\|TCAAAG
137	s32	Improved	TCAAAG\|TCAAAG
138	s43	Weedy	TCAAAG\|TCAAAG
139	s40	Landrace	TCAAAG\|TCAAAG
140	s41	Weedy	TCAAAG\|TCAAAG
141	s39	Landrace	TCAAAG\|TCAAAG
142	s42	Landrace	TCAAAG\|TCAAAG
143	s47	Improved	TCAAAG\|TCAAAG
144	s5	Landrace	TCAAAG\|TCAAAG
145	GW102	Landrace	TCAAAG\|TCAAAG
146	GW103	Landrace	TCAAAG\|T
147	GW104	Landrace	TCAAAG\|TCAAAG
148	GW105	Landrace	TCAAAG\|TCAAAG
149	GW16	Landrace	TCAAAG\|TCAAAG
150	GW2	Landrace	TCAAAG\|TCAAAG
151	GW34	Landrace	TCAAAG\|TCAAAG
152	GW37	Landrace	TCAAAG\|TCAAAG
153	GW58	Landrace	N\|N
154	GW59	Landrace	TCAAAG\|TCAAAG
155	GW9	Landrace	TCAAAG\|TCAAAG
156	s4	Weedy	TCAAAG\|TCAAAG
157	s6	Improved	TCAAAG\|TCAAAG
158	s7	Landrace	TCAAAG\|TCAAAG
159	s8	Landrace	TCAAAG\|TCAAAG
160	s9	Landrace	TCAAAG\|TCAAAG
161	J101	Landrace	TCAAAG\|TCAAAG
162	J103	Improved	TCAAAG\|TCAAAG
163	J112	Landrace	TCAAAG\|TCAAAG
164	J113	Improved	TCAAAG\|TCAAAG
165	J129	Improved	TCAAAG\|TCAAAG
166	J130	Improved	TCAAAG\|TCAAAG
167	J136	Improved	TCAAAG\|TCAAAG
168	J152	Improved	TCAAAG\|TCAAAG
169	J2	Landrace	TCAAAG\|TCAAAG
170	J20	Landrace	TCAAAG\|TCAAAG
171	J4	Landrace	TCAAAG\|TCAAAG
172	J42	Landrace	TCAAAG\|TCAAAG
173	J44	Landrace	TCAAAG\|TCAAAG
174	J49	Landrace	TCAAAG\|TCAAAG
175	J52	Landrace	TCAAAG\|TCAAAG
176	J53	Landrace	TCAAAG\|TCAAAG
177	J54	Landrace	N\|N
178	J57	Landrace	TCAAAG\|TCAAAG
179	J59	Landrace	TCAAAG\|TCAAAG
180	J64	Landrace	TCAAAG\|TCAAAG
181	J66	Landrace	TCAAAG\|TCAAAG
182	J67	Landrace	N\|N
183	J69	Landrace	TCAAAG\|TCAAAG
184	J87	Landrace	TCAAAG\|TCAAAG
185	J99	Landrace	TCAAAG\|TCAAAG
186	s45	Landrace	TCAAAG\|TCAAAG
187	s11	Improved	T\|T
188	s10	Improved	TCAAAG\|TCAAAG
189	s46	Improved	TCAAAG\|TCAAAG
190	s12	Improved	TCAAAG\|TCAAAG
191	s13	Landrace	TCAAAG\|TCAAAG
192	MHMD	Landrace	TCAAAG\|TCAAAG
193	s14	Improved	TCAAAG\|TCAAAG
194	s15	Improved	TCAAAG\|TCAAAG
195	s34	Weedy	TCAAAG\|TCAAAG
196	s33	Wild sorghum	TCAAAG\|TCAAAG
197	s21	Wild sorghum	TCAAAG\|TCAAAG
198	s16	Wild sorghum	TCAAAG\|TCAAAG
199	s44	Improved	TCAAAG\|TCAAAG
200	s35	Landrace	TCAAAG\|TCAAAG
201	s31	Wild sorghum	TCAAAG\|TCAAAG
202	s17	Improved	TCAAAG\|TCAAAG
203	s18	Improved	TCAAAG\|TCAAAG
204	s20	Improved	TCAAAG\|TCAAAG
205	s19	Improved	TCAAAG\|TCAAAG
206	s22	Landrace	TCAAAG\|TCAAAG
207	s23	Landrace	TCAAAG\|TCAAAG
208	s24	Landrace	TCAAAG\|TCAAAG
209	s25	Landrace	TCAAAG\|TCAAAG
210	s26	Landrace	TCAAAG\|TCAAAG
211	s27	Landrace	TCAAAG\|TCAAAG
212	s28	Landrace	TCAAAG\|TCAAAG
213	s29	Landrace	TCAAAG\|TCAAAG
214	s30	Landrace	TCAAAG\|TCAAAG
215	SL25	Wild sorghum	TCAAAG\|TCAAAG
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	TCAAAG\|TCAAAG
218	SL109	Wild sorghum	TCAAAG\|TCAAAG
219	SL12	Wild sorghum	TCAAAG\|TCAAAG
220	SL129	Wild sorghum	TCAAAG\|TCAAAG
221	SL130	Wild sorghum	TCAAAG\|TCAAAG
222	SL135	Wild sorghum	TCAAAG\|TCAAAG
223	SL136	Wild sorghum	TCAAAG\|TCAAAG
224	SL137	Wild sorghum	TCAAAG\|TCAAAG
225	SL138	Wild sorghum	TCAAAG\|TCAAAG
226	SL140	Wild sorghum	TCAAAG\|TCAAAG
227	SL141	Wild sorghum	TCAAAG\|TCAAAG
228	SL19	Wild sorghum	TCAAAG\|TCAAAG
229	SL28	Wild sorghum	TCAAAG\|TCAAAG
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	TCAAAG\|TCAAAG
233	SL37	Wild sorghum	TCAAAG\|TCAAAG
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	N\|N
236	SL43	Wild sorghum	TCAAAG\|TCAAAG
237	SL47	Wild sorghum	TCAAAG\|TCAAAG
238	SL49	Wild sorghum	TCAAAG\|TCAAAG
239	SL51	Wild sorghum	TCAAAG\|TCAAAG
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	TCAAAG\|TCAAAG
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	TCAAAG\|TCAAAG
244	s48	Improved	TCAAAG\|TCAAAG
245	Tu13	Wild sorghum	TCAAAG\|TCAAAG
246	Tu14	Wild sorghum	TCAAAG\|TCAAAG
247	Tu30	Wild sorghum	TCAAAG\|TCAAAG
248	Tu5	Wild sorghum	TCAAAG\|TCAAAG
249	WSC5	Landrace	TCAAAG\|TCAAAG
250	WSC15	Landrace	TCAAAG\|TCAAAG
251	WSC19	Landrace	TCAAAG\|TCAAAG
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	N\|N
254	WSC6	Landrace	TCAAAG\|TCAAAG
255	WSC61	Landrace	TCAAAG\|TCAAAG
256	WSC71	Improved	TCAAAG\|TCAAAG
257	WSC72	Landrace	N\|N
258	WSC79	Landrace	TCAAAG\|TCAAAG
259	WSC94	Landrace	TCAAAG\|TCAAAG
260	WSC99	Landrace	TCAAAG\|TCAAAG
261	WSC100	Landrace	TCAAAG\|TCAAAG
262	WSC104	Landrace	TCAAAG\|TCAAAG
263	WSC105	Landrace	N\|N
264	WSC12	Landrace	TCAAAG\|TCAAAG
265	WSC13	Landrace	TCAAAG\|TCAAAG
266	WSC16	Landrace	TCAAAG\|TCAAAG
267	WSC17	Landrace	TCAAAG\|TCAAAG
268	WSC18	Landrace	TCAAAG\|TCAAAG
269	WSC20	Landrace	TCAAAG\|TCAAAG
270	WSC24	Landrace	N\|N
271	WSC25	Landrace	TCAAAG\|TCAAAG
272	WSC29	Landrace	TCAAAG\|TCAAAG
273	WSC31	Landrace	TCAAAG\|TCAAAG
274	WSC32	Landrace	TCAAAG\|TCAAAG
275	WSC34	Landrace	N\|N
276	WSC38	Landrace	N\|N
277	WSC39	Improved	TCAAAG\|TCAAAG
278	WSC40	Landrace	N\|N
279	WSC54	Landrace	TCAAAG\|TCAAAG
280	WSC56	Landrace	TCAAAG\|TCAAAG
281	WSC59	Landrace	TCAAAG\|TCAAAG
282	WSC68	Landrace	TCAAAG\|TCAAAG
283	WSC70	Landrace	N\|N
284	WSC73	Landrace	TCAAAG\|TCAAAG
285	WSC81	Landrace	TCAAAG\|TCAAAG
286	WSC85	Improved	TCAAAG\|TCAAAG
287	WSC91	Landrace	TCAAAG\|TCAAAG
288	WSC93	Landrace	TCAAAG\|TCAAAG
289	WSC98	Landrace	TCAAAG\|TCAAAG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825258	Sobic.001G000100	upstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

Genome Browser