sorgsd

Variation ID : sbi33825259

Variation Detail

Variation ID	sbi33825259
Type	INDEL
Position	Chr01 720-724
Ref /Alleles	ATTTT/ * or A
MAF	*: 0.033
5' Flank	CAAATAAAAGTGCTATATTAGTCAAAGCTA
3' Flank	TTTTCGAACTGAACAAGGTCTTGACAAAAT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	ATTTT\|ATTTT
2	103	Improved	ATTTT\|ATTTT
3	107	Improved	N\|N
4	11	Improved	ATTTT\|ATTTT
5	110	Improved	ATTTT\|ATTTT
6	123	Landrace	ATTTT\|ATTTT
7	131	Improved	ATTTT\|ATTTT
8	132	Improved	ATTTT\|ATTTT
9	135	Improved	ATTTT\|ATTTT
10	137	Improved	ATTTT\|ATTTT
11	138	Improved	ATTTT\|ATTTT
12	14	Improved	ATTTT\|ATTTT
13	140	Improved	ATTTT\|ATTTT
14	141	Improved	ATTTT\|ATTTT
15	144	Improved	ATTTT\|ATTTT
16	150	Improved	ATTTT\|ATTTT
17	154	Improved	ATTTT\|ATTTT
18	159	Landrace	N\|N
19	16	Improved	ATTTT\|ATTTT
20	161	Landrace	ATTTT\|ATTTT
21	167	Improved	ATTTT\|ATTTT
22	168	Improved	ATTTT\|ATTTT
23	170	Improved	ATTTT\|ATTTT
24	173	Improved	ATTTT\|ATTTT
25	175	Improved	ATTTT\|ATTTT
26	176	Improved	ATTTT\|ATTTT
27	182	Landrace	N\|N
28	186	Improved	ATTTT\|ATTTT
29	190	Improved	ATTTT\|ATTTT
30	192	Improved	ATTTT\|ATTTT
31	194	Improved	ATTTT\|ATTTT
32	195	Improved	ATTTT\|ATTTT
33	197	Improved	ATTTT\|ATTTT
34	J22	Landrace	ATTTT\|ATTTT
35	J26	Landrace	ATTTT\|ATTTT
36	J5	Landrace	ATTTT\|ATTTT
37	J50	Landrace	ATTTT\|ATTTT
38	2001	Landrace	ATTTT\|ATTTT
39	2005	Improved	ATTTT\|ATTTT
40	2008	Improved	ATTTT\|ATTTT
41	2009	Landrace	\|
42	201	Improved	ATTTT\|ATTTT
43	2010	Landrace	ATTTT\|ATTTT
44	2016	Improved	ATTTT\|ATTTT
45	2019	Improved	ATTTT\|ATTTT
46	202	Improved	ATTTT\|ATTTT
47	2021	Improved	N\|N
48	2023	Improved	ATTTT\|ATTTT
49	2026	Improved	ATTTT\|ATTTT
50	2029	Improved	ATTTT\|ATTTT
51	2030	Landrace	ATTTT\|ATTTT
52	2031	Landrace	ATTTT\|ATTTT
53	2036	Improved	ATTTT\|ATTTT
54	2037	Improved	ATTTT\|ATTTT
55	2038	Improved	ATTTT\|ATTTT
56	2039	Improved	ATTTT\|ATTTT
57	204	Improved	ATTTT\|ATTTT
58	2042	Improved	N\|N
59	2043	Improved	\|
60	2048	Improved	ATTTT\|ATTTT
61	2049	Improved	ATTTT\|ATTTT
62	205	Improved	ATTTT\|ATTTT
63	2050	Improved	ATTTT\|ATTTT
64	2052	Improved	ATTTT\|ATTTT
65	2054	Improved	ATTTT\|ATTTT
66	2056	Improved	ATTTT\|ATTTT
67	2059	Improved	\|
68	206	Improved	ATTTT\|ATTTT
69	2064	Improved	ATTTT\|ATTTT
70	2065	Improved	ATTTT\|ATTTT
71	2067	Improved	ATTTT\|ATTTT
72	2068	Improved	ATTTT\|ATTTT
73	2069	Improved	ATTTT\|ATTTT
74	2071	Improved	ATTTT\|ATTTT
75	2074	Improved	ATTTT\|ATTTT
76	2075	Improved	ATTTT\|ATTTT
77	2076	Improved	ATTTT\|ATTTT
78	2080	Improved	ATTTT\|ATTTT
79	2081	Improved	ATTTT\|ATTTT
80	2082	Improved	ATTTT\|ATTTT
81	2086	Improved	ATTTT\|ATTTT
82	2088	Improved	ATTTT\|ATTTT
83	260	Wild sorghum	N\|N
84	261	Improved	ATTTT\|ATTTT
85	262	Improved	ATTTT\|ATTTT
86	263	Improved	ATTTT\|ATTTT
87	286	Improved	ATTTT\|ATTTT
88	29	Improved	ATTTT\|ATTTT
89	3	Improved	ATTTT\|ATTTT
90	302546	S.propinquum	N\|N
91	31	Improved	ATTTT\|ATTTT
92	32	Improved	ATTTT\|ATTTT
93	34	Improved	ATTTT\|ATTTT
94	346	Landrace	ATTTT\|ATTTT
95	348	Wild sorghum	N\|N
96	353	Wild sorghum	ATTTT\|ATTTT
97	355	Wild sorghum	ATTTT\|ATTTT
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	ATTTT\|ATTTT
100	367	Landrace	ATTTT\|ATTTT
101	s37	S.propinquum	ATTTT\|ATTTT
102	s38	S.propinquum	ATTTT\|ATTTT
103	370	Landrace	N\|N
104	377	Wild sorghum	ATTTT\|ATTTT
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	N\|N
107	40	Improved	ATTTT\|ATTTT
108	42	Improved	ATTTT\|ATTTT
109	43	Improved	ATTTT\|ATTTT
110	45	Improved	ATTTT\|ATTTT
111	47	Improved	N\|N
112	48	Improved	ATTTT\|ATTTT
113	51	Improved	ATTTT\|ATTTT
114	53	Improved	ATTTT\|ATTTT
115	56	Improved	ATTTT\|ATTTT
116	61	Improved	ATTTT\|ATTTT
117	62	Improved	ATTTT\|ATTTT
118	66	Landrace	N\|N
119	67	Improved	\|
120	68	Improved	ATTTT\|ATTTT
121	70	Improved	ATTTT\|ATTTT
122	73	Improved	ATTTT\|ATTTT
123	75	Improved	ATTTT\|ATTTT
124	88	Improved	ATTTT\|ATTTT
125	89	Improved	ATTTT\|ATTTT
126	91	Improved	\|
127	92	Improved	ATTTT\|ATTTT
128	93	Improved	\|
129	94	Improved	ATTTT\|ATTTT
130	95	Improved	ATTTT\|ATTTT
131	96	Improved	ATTTT\|ATTTT
132	97	Improved	ATTTT\|ATTTT
133	s1	Improved	ATTTT\|ATTTT
134	s36	Wild sorghum	ATTTT\|ATTTT
135	s2	Landrace	ATTTT\|ATTTT
136	s3	Improved	ATTTT\|ATTTT
137	s32	Improved	ATTTT\|ATTTT
138	s43	Weedy	ATTTT\|ATTTT
139	s40	Landrace	ATTTT\|ATTTT
140	s41	Weedy	ATTTT\|ATTTT
141	s39	Landrace	ATTTT\|ATTTT
142	s42	Landrace	ATTTT\|ATTTT
143	s47	Improved	N\|N
144	s5	Landrace	ATTTT\|ATTTT
145	GW102	Landrace	ATTTT\|ATTTT
146	GW103	Landrace	ATTTT\|*
147	GW104	Landrace	ATTTT\|ATTTT
148	GW105	Landrace	ATTTT\|ATTTT
149	GW16	Landrace	ATTTT\|ATTTT
150	GW2	Landrace	ATTTT\|ATTTT
151	GW34	Landrace	ATTTT\|ATTTT
152	GW37	Landrace	ATTTT\|ATTTT
153	GW58	Landrace	N\|N
154	GW59	Landrace	ATTTT\|ATTTT
155	GW9	Landrace	ATTTT\|ATTTT
156	s4	Weedy	ATTTT\|ATTTT
157	s6	Improved	ATTTT\|ATTTT
158	s7	Landrace	ATTTT\|ATTTT
159	s8	Landrace	ATTTT\|ATTTT
160	s9	Landrace	ATTTT\|ATTTT
161	J101	Landrace	ATTTT\|ATTTT
162	J103	Improved	ATTTT\|ATTTT
163	J112	Landrace	ATTTT\|ATTTT
164	J113	Improved	N\|N
165	J129	Improved	ATTTT\|ATTTT
166	J130	Improved	ATTTT\|ATTTT
167	J136	Improved	ATTTT\|ATTTT
168	J152	Improved	ATTTT\|ATTTT
169	J2	Landrace	ATTTT\|ATTTT
170	J20	Landrace	ATTTT\|ATTTT
171	J4	Landrace	ATTTT\|ATTTT
172	J42	Landrace	ATTTT\|ATTTT
173	J44	Landrace	ATTTT\|ATTTT
174	J49	Landrace	ATTTT\|ATTTT
175	J52	Landrace	ATTTT\|ATTTT
176	J53	Landrace	ATTTT\|ATTTT
177	J54	Landrace	N\|N
178	J57	Landrace	ATTTT\|ATTTT
179	J59	Landrace	ATTTT\|ATTTT
180	J64	Landrace	ATTTT\|ATTTT
181	J66	Landrace	ATTTT\|ATTTT
182	J67	Landrace	N\|N
183	J69	Landrace	ATTTT\|ATTTT
184	J87	Landrace	ATTTT\|ATTTT
185	J99	Landrace	ATTTT\|ATTTT
186	s45	Landrace	ATTTT\|ATTTT
187	s11	Improved	\|
188	s10	Improved	ATTTT\|ATTTT
189	s46	Improved	ATTTT\|ATTTT
190	s12	Improved	ATTTT\|ATTTT
191	s13	Landrace	ATTTT\|ATTTT
192	MHMD	Landrace	ATTTT\|ATTTT
193	s14	Improved	ATTTT\|ATTTT
194	s15	Improved	ATTTT\|ATTTT
195	s34	Weedy	ATTTT\|ATTTT
196	s33	Wild sorghum	ATTTT\|ATTTT
197	s21	Wild sorghum	ATTTT\|ATTTT
198	s16	Wild sorghum	ATTTT\|ATTTT
199	s44	Improved	ATTTT\|ATTTT
200	s35	Landrace	ATTTT\|ATTTT
201	s31	Wild sorghum	ATTTT\|ATTTT
202	s17	Improved	ATTTT\|ATTTT
203	s18	Improved	ATTTT\|ATTTT
204	s20	Improved	ATTTT\|ATTTT
205	s19	Improved	ATTTT\|ATTTT
206	s22	Landrace	ATTTT\|ATTTT
207	s23	Landrace	ATTTT\|ATTTT
208	s24	Landrace	ATTTT\|ATTTT
209	s25	Landrace	ATTTT\|ATTTT
210	s26	Landrace	ATTTT\|ATTTT
211	s27	Landrace	ATTTT\|ATTTT
212	s28	Landrace	ATTTT\|ATTTT
213	s29	Landrace	ATTTT\|ATTTT
214	s30	Landrace	ATTTT\|ATTTT
215	SL25	Wild sorghum	N\|N
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	ATTTT\|ATTTT
218	SL109	Wild sorghum	ATTTT\|ATTTT
219	SL12	Wild sorghum	ATTTT\|ATTTT
220	SL129	Wild sorghum	ATTTT\|ATTTT
221	SL130	Wild sorghum	ATTTT\|ATTTT
222	SL135	Wild sorghum	ATTTT\|ATTTT
223	SL136	Wild sorghum	ATTTT\|ATTTT
224	SL137	Wild sorghum	ATTTT\|ATTTT
225	SL138	Wild sorghum	ATTTT\|ATTTT
226	SL140	Wild sorghum	ATTTT\|ATTTT
227	SL141	Wild sorghum	ATTTT\|ATTTT
228	SL19	Wild sorghum	ATTTT\|ATTTT
229	SL28	Wild sorghum	ATTTT\|ATTTT
230	SL32	Wild sorghum	ATTTT\|ATTTT
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	ATTTT\|ATTTT
233	SL37	Wild sorghum	ATTTT\|ATTTT
234	SL39	Wild sorghum	ATTTT\|ATTTT
235	SL41	Wild sorghum	\|
236	SL43	Wild sorghum	ATTTT\|ATTTT
237	SL47	Wild sorghum	ATTTT\|ATTTT
238	SL49	Wild sorghum	A\|A
239	SL51	Wild sorghum	ATTTT\|ATTTT
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	ATTTT\|ATTTT
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	ATTTT\|ATTTT
244	s48	Improved	ATTTT\|ATTTT
245	Tu13	Wild sorghum	ATTTT\|ATTTT
246	Tu14	Wild sorghum	ATTTT\|ATTTT
247	Tu30	Wild sorghum	ATTTT\|ATTTT
248	Tu5	Wild sorghum	ATTTT\|ATTTT
249	WSC5	Landrace	ATTTT\|ATTTT
250	WSC15	Landrace	ATTTT\|ATTTT
251	WSC19	Landrace	ATTTT\|ATTTT
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	N\|N
254	WSC6	Landrace	ATTTT\|ATTTT
255	WSC61	Landrace	ATTTT\|ATTTT
256	WSC71	Improved	ATTTT\|ATTTT
257	WSC72	Landrace	N\|N
258	WSC79	Landrace	ATTTT\|ATTTT
259	WSC94	Landrace	ATTTT\|ATTTT
260	WSC99	Landrace	ATTTT\|ATTTT
261	WSC100	Landrace	ATTTT\|ATTTT
262	WSC104	Landrace	ATTTT\|ATTTT
263	WSC105	Landrace	N\|N
264	WSC12	Landrace	ATTTT\|ATTTT
265	WSC13	Landrace	ATTTT\|ATTTT
266	WSC16	Landrace	ATTTT\|ATTTT
267	WSC17	Landrace	ATTTT\|ATTTT
268	WSC18	Landrace	ATTTT\|ATTTT
269	WSC20	Landrace	ATTTT\|ATTTT
270	WSC24	Landrace	N\|N
271	WSC25	Landrace	ATTTT\|ATTTT
272	WSC29	Landrace	ATTTT\|ATTTT
273	WSC31	Landrace	ATTTT\|ATTTT
274	WSC32	Landrace	ATTTT\|ATTTT
275	WSC34	Landrace	N\|N
276	WSC38	Landrace	N\|N
277	WSC39	Improved	ATTTT\|ATTTT
278	WSC40	Landrace	N\|N
279	WSC54	Landrace	ATTTT\|ATTTT
280	WSC56	Landrace	ATTTT\|ATTTT
281	WSC59	Landrace	ATTTT\|ATTTT
282	WSC68	Landrace	ATTTT\|ATTTT
283	WSC70	Landrace	N\|N
284	WSC73	Landrace	ATTTT\|ATTTT
285	WSC81	Landrace	ATTTT\|ATTTT
286	WSC85	Improved	ATTTT\|ATTTT
287	WSC91	Landrace	ATTTT\|ATTTT
288	WSC93	Landrace	ATTTT\|ATTTT
289	WSC98	Landrace	ATTTT\|ATTTT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825259	Sobic.001G000100	upstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

Genome Browser