Variation ID : sbi33825265

Variation Detail



Variation ID sbi33825265
Type INDEL
Position Chr01 971-977
Ref /Alleles TCAAGCG/ T
MAF T: 0.009
5' Flank AACCATGCTGATGCTATAGAAGGGAAGCCG
3' Flank AAGGGAAGGGAAGCCATATATACCTACCTT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved TCAAGCG|TCAAGCG
2 103 Improved TCAAGCG|TCAAGCG
3 107 Improved TCAAGCG|TCAAGCG
4 11 Improved TCAAGCG|TCAAGCG
5 110 Improved TCAAGCG|TCAAGCG
6 123 Landrace TCAAGCG|TCAAGCG
7 131 Improved TCAAGCG|TCAAGCG
8 132 Improved TCAAGCG|TCAAGCG
9 135 Improved N|N
10 137 Improved TCAAGCG|TCAAGCG
11 138 Improved TCAAGCG|TCAAGCG
12 14 Improved TCAAGCG|TCAAGCG
13 140 Improved TCAAGCG|TCAAGCG
14 141 Improved TCAAGCG|TCAAGCG
15 144 Improved TCAAGCG|TCAAGCG
16 150 Improved TCAAGCG|TCAAGCG
17 154 Improved TCAAGCG|TCAAGCG
18 159 Landrace N|N
19 16 Improved TCAAGCG|TCAAGCG
20 161 Landrace TCAAGCG|TCAAGCG
21 167 Improved TCAAGCG|TCAAGCG
22 168 Improved TCAAGCG|TCAAGCG
23 170 Improved TCAAGCG|TCAAGCG
24 173 Improved TCAAGCG|TCAAGCG
25 175 Improved TCAAGCG|TCAAGCG
26 176 Improved TCAAGCG|TCAAGCG
27 182 Landrace TCAAGCG|TCAAGCG
28 186 Improved TCAAGCG|TCAAGCG
29 190 Improved TCAAGCG|TCAAGCG
30 192 Improved TCAAGCG|TCAAGCG
31 194 Improved TCAAGCG|TCAAGCG
32 195 Improved TCAAGCG|TCAAGCG
33 197 Improved TCAAGCG|TCAAGCG
34 J22 Landrace TCAAGCG|TCAAGCG
35 J26 Landrace TCAAGCG|TCAAGCG
36 J5 Landrace TCAAGCG|TCAAGCG
37 J50 Landrace TCAAGCG|TCAAGCG
38 2001 Landrace TCAAGCG|TCAAGCG
39 2005 Improved TCAAGCG|TCAAGCG
40 2008 Improved TCAAGCG|TCAAGCG
41 2009 Landrace TCAAGCG|TCAAGCG
42 201 Improved TCAAGCG|TCAAGCG
43 2010 Landrace TCAAGCG|TCAAGCG
44 2016 Improved TCAAGCG|TCAAGCG
45 2019 Improved TCAAGCG|TCAAGCG
46 202 Improved TCAAGCG|TCAAGCG
47 2021 Improved TCAAGCG|TCAAGCG
48 2023 Improved TCAAGCG|TCAAGCG
49 2026 Improved TCAAGCG|TCAAGCG
50 2029 Improved TCAAGCG|TCAAGCG
51 2030 Landrace TCAAGCG|TCAAGCG
52 2031 Landrace TCAAGCG|TCAAGCG
53 2036 Improved TCAAGCG|TCAAGCG
54 2037 Improved TCAAGCG|TCAAGCG
55 2038 Improved N|N
56 2039 Improved TCAAGCG|TCAAGCG
57 204 Improved TCAAGCG|TCAAGCG
58 2042 Improved N|N
59 2043 Improved TCAAGCG|TCAAGCG
60 2048 Improved TCAAGCG|TCAAGCG
61 2049 Improved TCAAGCG|TCAAGCG
62 205 Improved TCAAGCG|TCAAGCG
63 2050 Improved TCAAGCG|TCAAGCG
64 2052 Improved TCAAGCG|TCAAGCG
65 2054 Improved TCAAGCG|TCAAGCG
66 2056 Improved TCAAGCG|TCAAGCG
67 2059 Improved TCAAGCG|TCAAGCG
68 206 Improved TCAAGCG|TCAAGCG
69 2064 Improved TCAAGCG|TCAAGCG
70 2065 Improved TCAAGCG|TCAAGCG
71 2067 Improved TCAAGCG|TCAAGCG
72 2068 Improved TCAAGCG|TCAAGCG
73 2069 Improved TCAAGCG|TCAAGCG
74 2071 Improved TCAAGCG|TCAAGCG
75 2074 Improved TCAAGCG|TCAAGCG
76 2075 Improved TCAAGCG|TCAAGCG
77 2076 Improved TCAAGCG|TCAAGCG
78 2080 Improved TCAAGCG|TCAAGCG
79 2081 Improved TCAAGCG|TCAAGCG
80 2082 Improved TCAAGCG|TCAAGCG
81 2086 Improved TCAAGCG|TCAAGCG
82 2088 Improved TCAAGCG|TCAAGCG
83 260 Wild sorghum N|N
84 261 Improved TCAAGCG|TCAAGCG
85 262 Improved TCAAGCG|TCAAGCG
86 263 Improved TCAAGCG|TCAAGCG
87 286 Improved TCAAGCG|TCAAGCG
88 29 Improved TCAAGCG|TCAAGCG
89 3 Improved TCAAGCG|TCAAGCG
90 302546 S.propinquum TCAAGCG|T
91 31 Improved TCAAGCG|TCAAGCG
92 32 Improved TCAAGCG|TCAAGCG
93 34 Improved TCAAGCG|TCAAGCG
94 346 Landrace TCAAGCG|TCAAGCG
95 348 Wild sorghum TCAAGCG|TCAAGCG
96 353 Wild sorghum TCAAGCG|TCAAGCG
97 355 Wild sorghum TCAAGCG|TCAAGCG
98 357 Wild sorghum TCAAGCG|TCAAGCG
99 364 Wild sorghum TCAAGCG|TCAAGCG
100 367 Landrace TCAAGCG|TCAAGCG
101 s37 S.propinquum T|T
102 s38 S.propinquum T|T
103 370 Landrace N|N
104 377 Wild sorghum TCAAGCG|TCAAGCG
105 392 Wild sorghum TCAAGCG|TCAAGCG
106 394 Wild sorghum TCAAGCG|TCAAGCG
107 40 Improved TCAAGCG|TCAAGCG
108 42 Improved TCAAGCG|TCAAGCG
109 43 Improved TCAAGCG|TCAAGCG
110 45 Improved TCAAGCG|TCAAGCG
111 47 Improved TCAAGCG|TCAAGCG
112 48 Improved TCAAGCG|TCAAGCG
113 51 Improved TCAAGCG|TCAAGCG
114 53 Improved TCAAGCG|TCAAGCG
115 56 Improved TCAAGCG|TCAAGCG
116 61 Improved TCAAGCG|TCAAGCG
117 62 Improved TCAAGCG|TCAAGCG
118 66 Landrace N|N
119 67 Improved TCAAGCG|TCAAGCG
120 68 Improved TCAAGCG|TCAAGCG
121 70 Improved TCAAGCG|TCAAGCG
122 73 Improved TCAAGCG|TCAAGCG
123 75 Improved TCAAGCG|TCAAGCG
124 88 Improved TCAAGCG|TCAAGCG
125 89 Improved TCAAGCG|TCAAGCG
126 91 Improved TCAAGCG|TCAAGCG
127 92 Improved TCAAGCG|TCAAGCG
128 93 Improved TCAAGCG|TCAAGCG
129 94 Improved TCAAGCG|TCAAGCG
130 95 Improved TCAAGCG|TCAAGCG
131 96 Improved TCAAGCG|TCAAGCG
132 97 Improved TCAAGCG|TCAAGCG
133 s1 Improved TCAAGCG|TCAAGCG
134 s36 Wild sorghum TCAAGCG|TCAAGCG
135 s2 Landrace TCAAGCG|TCAAGCG
136 s3 Improved TCAAGCG|TCAAGCG
137 s32 Improved TCAAGCG|TCAAGCG
138 s43 Weedy TCAAGCG|TCAAGCG
139 s40 Landrace TCAAGCG|TCAAGCG
140 s41 Weedy TCAAGCG|TCAAGCG
141 s39 Landrace TCAAGCG|TCAAGCG
142 s42 Landrace TCAAGCG|TCAAGCG
143 s47 Improved TCAAGCG|TCAAGCG
144 s5 Landrace TCAAGCG|TCAAGCG
145 GW102 Landrace TCAAGCG|TCAAGCG
146 GW103 Landrace TCAAGCG|TCAAGCG
147 GW104 Landrace TCAAGCG|TCAAGCG
148 GW105 Landrace N|N
149 GW16 Landrace N|N
150 GW2 Landrace TCAAGCG|TCAAGCG
151 GW34 Landrace TCAAGCG|TCAAGCG
152 GW37 Landrace TCAAGCG|TCAAGCG
153 GW58 Landrace TCAAGCG|TCAAGCG
154 GW59 Landrace TCAAGCG|TCAAGCG
155 GW9 Landrace TCAAGCG|TCAAGCG
156 s4 Weedy TCAAGCG|TCAAGCG
157 s6 Improved TCAAGCG|TCAAGCG
158 s7 Landrace TCAAGCG|TCAAGCG
159 s8 Landrace TCAAGCG|TCAAGCG
160 s9 Landrace TCAAGCG|TCAAGCG
161 J101 Landrace TCAAGCG|TCAAGCG
162 J103 Improved TCAAGCG|TCAAGCG
163 J112 Landrace TCAAGCG|TCAAGCG
164 J113 Improved TCAAGCG|TCAAGCG
165 J129 Improved TCAAGCG|TCAAGCG
166 J130 Improved TCAAGCG|TCAAGCG
167 J136 Improved TCAAGCG|TCAAGCG
168 J152 Improved N|N
169 J2 Landrace TCAAGCG|TCAAGCG
170 J20 Landrace TCAAGCG|TCAAGCG
171 J4 Landrace TCAAGCG|TCAAGCG
172 J42 Landrace TCAAGCG|TCAAGCG
173 J44 Landrace TCAAGCG|TCAAGCG
174 J49 Landrace TCAAGCG|TCAAGCG
175 J52 Landrace TCAAGCG|TCAAGCG
176 J53 Landrace TCAAGCG|TCAAGCG
177 J54 Landrace TCAAGCG|TCAAGCG
178 J57 Landrace TCAAGCG|TCAAGCG
179 J59 Landrace TCAAGCG|TCAAGCG
180 J64 Landrace TCAAGCG|TCAAGCG
181 J66 Landrace TCAAGCG|TCAAGCG
182 J67 Landrace TCAAGCG|TCAAGCG
183 J69 Landrace TCAAGCG|TCAAGCG
184 J87 Landrace TCAAGCG|TCAAGCG
185 J99 Landrace TCAAGCG|TCAAGCG
186 s45 Landrace TCAAGCG|TCAAGCG
187 s11 Improved TCAAGCG|TCAAGCG
188 s10 Improved TCAAGCG|TCAAGCG
189 s46 Improved TCAAGCG|TCAAGCG
190 s12 Improved TCAAGCG|TCAAGCG
191 s13 Landrace TCAAGCG|TCAAGCG
192 MHMD Landrace TCAAGCG|TCAAGCG
193 s14 Improved TCAAGCG|TCAAGCG
194 s15 Improved TCAAGCG|TCAAGCG
195 s34 Weedy TCAAGCG|TCAAGCG
196 s33 Wild sorghum TCAAGCG|TCAAGCG
197 s21 Wild sorghum TCAAGCG|TCAAGCG
198 s16 Wild sorghum TCAAGCG|TCAAGCG
199 s44 Improved TCAAGCG|TCAAGCG
200 s35 Landrace TCAAGCG|TCAAGCG
201 s31 Wild sorghum TCAAGCG|TCAAGCG
202 s17 Improved TCAAGCG|TCAAGCG
203 s18 Improved TCAAGCG|TCAAGCG
204 s20 Improved TCAAGCG|TCAAGCG
205 s19 Improved TCAAGCG|TCAAGCG
206 s22 Landrace TCAAGCG|TCAAGCG
207 s23 Landrace TCAAGCG|TCAAGCG
208 s24 Landrace TCAAGCG|TCAAGCG
209 s25 Landrace TCAAGCG|TCAAGCG
210 s26 Landrace TCAAGCG|TCAAGCG
211 s27 Landrace TCAAGCG|TCAAGCG
212 s28 Landrace TCAAGCG|TCAAGCG
213 s29 Landrace TCAAGCG|TCAAGCG
214 s30 Landrace TCAAGCG|TCAAGCG
215 SL25 Wild sorghum TCAAGCG|TCAAGCG
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum TCAAGCG|TCAAGCG
219 SL12 Wild sorghum TCAAGCG|TCAAGCG
220 SL129 Wild sorghum TCAAGCG|TCAAGCG
221 SL130 Wild sorghum TCAAGCG|TCAAGCG
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum TCAAGCG|TCAAGCG
224 SL137 Wild sorghum TCAAGCG|TCAAGCG
225 SL138 Wild sorghum TCAAGCG|TCAAGCG
226 SL140 Wild sorghum N|N
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum TCAAGCG|TCAAGCG
229 SL28 Wild sorghum TCAAGCG|TCAAGCG
230 SL32 Wild sorghum TCAAGCG|TCAAGCG
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum TCAAGCG|TCAAGCG
233 SL37 Wild sorghum TCAAGCG|TCAAGCG
234 SL39 Wild sorghum TCAAGCG|TCAAGCG
235 SL41 Wild sorghum TCAAGCG|TCAAGCG
236 SL43 Wild sorghum TCAAGCG|TCAAGCG
237 SL47 Wild sorghum TCAAGCG|TCAAGCG
238 SL49 Wild sorghum TCAAGCG|TCAAGCG
239 SL51 Wild sorghum TCAAGCG|TCAAGCG
240 SL53 Wild sorghum TCAAGCG|TCAAGCG
241 SL62 Wild sorghum TCAAGCG|TCAAGCG
242 SL83 Wild sorghum TCAAGCG|TCAAGCG
243 SL97 Landrace TCAAGCG|TCAAGCG
244 s48 Improved TCAAGCG|TCAAGCG
245 Tu13 Wild sorghum TCAAGCG|TCAAGCG
246 Tu14 Wild sorghum TCAAGCG|TCAAGCG
247 Tu30 Wild sorghum TCAAGCG|TCAAGCG
248 Tu5 Wild sorghum TCAAGCG|TCAAGCG
249 WSC5 Landrace TCAAGCG|TCAAGCG
250 WSC15 Landrace N|N
251 WSC19 Landrace N|N
252 WSC30 Landrace N|N
253 WSC52 Landrace N|N
254 WSC6 Landrace TCAAGCG|TCAAGCG
255 WSC61 Landrace TCAAGCG|TCAAGCG
256 WSC71 Improved TCAAGCG|TCAAGCG
257 WSC72 Landrace TCAAGCG|TCAAGCG
258 WSC79 Landrace TCAAGCG|TCAAGCG
259 WSC94 Landrace TCAAGCG|TCAAGCG
260 WSC99 Landrace TCAAGCG|TCAAGCG
261 WSC100 Landrace TCAAGCG|TCAAGCG
262 WSC104 Landrace TCAAGCG|TCAAGCG
263 WSC105 Landrace TCAAGCG|TCAAGCG
264 WSC12 Landrace TCAAGCG|TCAAGCG
265 WSC13 Landrace TCAAGCG|TCAAGCG
266 WSC16 Landrace TCAAGCG|TCAAGCG
267 WSC17 Landrace TCAAGCG|TCAAGCG
268 WSC18 Landrace TCAAGCG|TCAAGCG
269 WSC20 Landrace TCAAGCG|TCAAGCG
270 WSC24 Landrace TCAAGCG|TCAAGCG
271 WSC25 Landrace TCAAGCG|TCAAGCG
272 WSC29 Landrace TCAAGCG|TCAAGCG
273 WSC31 Landrace N|N
274 WSC32 Landrace N|N
275 WSC34 Landrace N|N
276 WSC38 Landrace N|N
277 WSC39 Improved TCAAGCG|TCAAGCG
278 WSC40 Landrace TCAAGCG|TCAAGCG
279 WSC54 Landrace TCAAGCG|TCAAGCG
280 WSC56 Landrace TCAAGCG|TCAAGCG
281 WSC59 Landrace TCAAGCG|TCAAGCG
282 WSC68 Landrace TCAAGCG|TCAAGCG
283 WSC70 Landrace TCAAGCG|TCAAGCG
284 WSC73 Landrace TCAAGCG|TCAAGCG
285 WSC81 Landrace TCAAGCG|TCAAGCG
286 WSC85 Improved TCAAGCG|TCAAGCG
287 WSC91 Landrace TCAAGCG|TCAAGCG
288 WSC93 Landrace TCAAGCG|TCAAGCG
289 WSC98 Landrace TCAAGCG|TCAAGCG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825265 Sobic.001G000100 upstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser