Variation ID : sbi33825277

Variation Detail



Variation ID sbi33825277
Type INDEL
Position Chr01 1639-1640
Ref /Alleles AC/ A or ACC
MAF A: 0.365
5' Flank AAAGGCAGGCGCCGCAACTAACATGCATAT
3' Flank CCCCCCAGCATCCATCCTCAATCGGGCAAC

Individual Alleles

id Sample Id Type Alleles
1 101 Improved AC|A
2 103 Improved AC|A
3 107 Improved AC|AC
4 11 Improved AC|A
5 110 Improved AC|AC
6 123 Landrace A|A
7 131 Improved AC|AC
8 132 Improved A|A
9 135 Improved AC|A
10 137 Improved AC|AC
11 138 Improved AC|AC
12 14 Improved AC|AC
13 140 Improved N|N
14 141 Improved AC|A
15 144 Improved AC|A
16 150 Improved AC|A
17 154 Improved A|A
18 159 Landrace AC|AC
19 16 Improved AC|AC
20 161 Landrace AC|AC
21 167 Improved AC|AC
22 168 Improved AC|AC
23 170 Improved AC|AC
24 173 Improved A|A
25 175 Improved AC|A
26 176 Improved AC|AC
27 182 Landrace N|N
28 186 Improved AC|AC
29 190 Improved AC|AC
30 192 Improved N|N
31 194 Improved A|A
32 195 Improved A|A
33 197 Improved A|A
34 J22 Landrace A|A
35 J26 Landrace AC|AC
36 J5 Landrace A|A
37 J50 Landrace AC|AC
38 2001 Landrace A|A
39 2005 Improved A|A
40 2008 Improved AC|AC
41 2009 Landrace N|N
42 201 Improved AC|A
43 2010 Landrace AC|A
44 2016 Improved N|N
45 2019 Improved AC|AC
46 202 Improved AC|AC
47 2021 Improved A|A
48 2023 Improved N|N
49 2026 Improved AC|AC
50 2029 Improved A|A
51 2030 Landrace A|A
52 2031 Landrace AC|AC
53 2036 Improved AC|AC
54 2037 Improved AC|A
55 2038 Improved AC|A
56 2039 Improved A|A
57 204 Improved AC|A
58 2042 Improved AC|AC
59 2043 Improved AC|A
60 2048 Improved AC|AC
61 2049 Improved AC|AC
62 205 Improved AC|AC
63 2050 Improved N|N
64 2052 Improved AC|AC
65 2054 Improved A|A
66 2056 Improved AC|AC
67 2059 Improved AC|A
68 206 Improved AC|AC
69 2064 Improved A|A
70 2065 Improved AC|AC
71 2067 Improved N|N
72 2068 Improved A|A
73 2069 Improved A|A
74 2071 Improved AC|A
75 2074 Improved A|A
76 2075 Improved AC|AC
77 2076 Improved AC|AC
78 2080 Improved A|A
79 2081 Improved AC|AC
80 2082 Improved N|N
81 2086 Improved N|N
82 2088 Improved AC|AC
83 260 Wild sorghum N|N
84 261 Improved AC|AC
85 262 Improved A|A
86 263 Improved AC|AC
87 286 Improved AC|AC
88 29 Improved N|N
89 3 Improved AC|AC
90 302546 S.propinquum N|N
91 31 Improved AC|A
92 32 Improved AC|AC
93 34 Improved AC|A
94 346 Landrace AC|AC
95 348 Wild sorghum A|A
96 353 Wild sorghum ACC|ACC
97 355 Wild sorghum ACC|ACC
98 357 Wild sorghum A|A
99 364 Wild sorghum A|A
100 367 Landrace N|N
101 s37 S.propinquum A|A
102 s38 S.propinquum A|A
103 370 Landrace AC|AC
104 377 Wild sorghum AC|AC
105 392 Wild sorghum A|A
106 394 Wild sorghum A|A
107 40 Improved N|N
108 42 Improved AC|A
109 43 Improved AC|AC
110 45 Improved AC|A
111 47 Improved AC|AC
112 48 Improved A|A
113 51 Improved AC|A
114 53 Improved AC|A
115 56 Improved AC|AC
116 61 Improved AC|AC
117 62 Improved AC|AC
118 66 Landrace AC|AC
119 67 Improved AC|A
120 68 Improved AC|AC
121 70 Improved A|A
122 73 Improved AC|AC
123 75 Improved AC|AC
124 88 Improved AC|A
125 89 Improved AC|A
126 91 Improved AC|A
127 92 Improved AC|A
128 93 Improved AC|AC
129 94 Improved AC|A
130 95 Improved AC|A
131 96 Improved AC|A
132 97 Improved AC|A
133 s1 Improved AC|AC
134 s36 Wild sorghum N|N
135 s2 Landrace AC|AC
136 s3 Improved AC|AC
137 s32 Improved AC|AC
138 s43 Weedy AC|AC
139 s40 Landrace N|N
140 s41 Weedy A|A
141 s39 Landrace N|N
142 s42 Landrace AC|AC
143 s47 Improved AC|AC
144 s5 Landrace AC|AC
145 GW102 Landrace AC|AC
146 GW103 Landrace AC|A
147 GW104 Landrace AC|AC
148 GW105 Landrace AC|A
149 GW16 Landrace A|A
150 GW2 Landrace AC|AC
151 GW34 Landrace A|A
152 GW37 Landrace A|A
153 GW58 Landrace AC|A
154 GW59 Landrace A|A
155 GW9 Landrace A|A
156 s4 Weedy N|N
157 s6 Improved AC|AC
158 s7 Landrace N|N
159 s8 Landrace N|N
160 s9 Landrace AC|AC
161 J101 Landrace A|A
162 J103 Improved AC|AC
163 J112 Landrace A|A
164 J113 Improved N|N
165 J129 Improved AC|AC
166 J130 Improved AC|AC
167 J136 Improved AC|AC
168 J152 Improved AC|AC
169 J2 Landrace AC|AC
170 J20 Landrace AC|AC
171 J4 Landrace AC|AC
172 J42 Landrace AC|AC
173 J44 Landrace AC|AC
174 J49 Landrace A|A
175 J52 Landrace AC|AC
176 J53 Landrace A|A
177 J54 Landrace A|A
178 J57 Landrace AC|AC
179 J59 Landrace AC|AC
180 J64 Landrace AC|AC
181 J66 Landrace N|N
182 J67 Landrace AC|AC
183 J69 Landrace AC|AC
184 J87 Landrace A|A
185 J99 Landrace AC|AC
186 s45 Landrace AC|AC
187 s11 Improved AC|AC
188 s10 Improved N|N
189 s46 Improved AC|AC
190 s12 Improved AC|AC
191 s13 Landrace AC|AC
192 MHMD Landrace AC|A
193 s14 Improved AC|AC
194 s15 Improved AC|AC
195 s34 Weedy A|A
196 s33 Wild sorghum A|A
197 s21 Wild sorghum AC|AC
198 s16 Wild sorghum N|N
199 s44 Improved N|N
200 s35 Landrace AC|A
201 s31 Wild sorghum N|N
202 s17 Improved AC|AC
203 s18 Improved N|N
204 s20 Improved N|N
205 s19 Improved AC|AC
206 s22 Landrace AC|AC
207 s23 Landrace AC|A
208 s24 Landrace A|A
209 s25 Landrace AC|AC
210 s26 Landrace N|N
211 s27 Landrace AC|AC
212 s28 Landrace AC|AC
213 s29 Landrace AC|AC
214 s30 Landrace AC|AC
215 SL25 Wild sorghum A|A
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum AC|A
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum ACC|ACC
220 SL129 Wild sorghum AC|A
221 SL130 Wild sorghum AC|A
222 SL135 Wild sorghum AC|A
223 SL136 Wild sorghum A|A
224 SL137 Wild sorghum A|A
225 SL138 Wild sorghum A|A
226 SL140 Wild sorghum AC|A
227 SL141 Wild sorghum A|A
228 SL19 Wild sorghum ACC|ACC
229 SL28 Wild sorghum AC|AC
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum A|A
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum A|A
234 SL39 Wild sorghum AC|AC
235 SL41 Wild sorghum AC|A
236 SL43 Wild sorghum A|A
237 SL47 Wild sorghum AC|ACC
238 SL49 Wild sorghum A|A
239 SL51 Wild sorghum A|A
240 SL53 Wild sorghum AC|AC
241 SL62 Wild sorghum A|A
242 SL83 Wild sorghum AC|ACC
243 SL97 Landrace A|A
244 s48 Improved AC|AC
245 Tu13 Wild sorghum A|A
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace N|N
250 WSC15 Landrace A|A
251 WSC19 Landrace AC|AC
252 WSC30 Landrace AC|AC
253 WSC52 Landrace AC|AC
254 WSC6 Landrace A|A
255 WSC61 Landrace AC|AC
256 WSC71 Improved AC|AC
257 WSC72 Landrace AC|AC
258 WSC79 Landrace AC|A
259 WSC94 Landrace AC|AC
260 WSC99 Landrace AC|A
261 WSC100 Landrace A|A
262 WSC104 Landrace A|A
263 WSC105 Landrace AC|AC
264 WSC12 Landrace AC|AC
265 WSC13 Landrace AC|AC
266 WSC16 Landrace N|N
267 WSC17 Landrace AC|AC
268 WSC18 Landrace AC|AC
269 WSC20 Landrace AC|AC
270 WSC24 Landrace AC|AC
271 WSC25 Landrace N|N
272 WSC29 Landrace N|N
273 WSC31 Landrace AC|AC
274 WSC32 Landrace A|A
275 WSC34 Landrace AC|AC
276 WSC38 Landrace AC|AC
277 WSC39 Improved A|A
278 WSC40 Landrace AC|AC
279 WSC54 Landrace AC|AC
280 WSC56 Landrace AC|AC
281 WSC59 Landrace AC|A
282 WSC68 Landrace AC|AC
283 WSC70 Landrace AC|AC
284 WSC73 Landrace AC|AC
285 WSC81 Landrace AC|A
286 WSC85 Improved AC|A
287 WSC91 Landrace AC|A
288 WSC93 Landrace AC|AC
289 WSC98 Landrace A|A

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825277 Sobic.001G000100 upstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p
sbi33825277 Sobic.001G000100 upstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

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