sorgsd

Variation ID : sbi33825284

Variation Detail

Variation ID	sbi33825284
Type	INDEL
Position	Chr01 2797-2807
Ref /Alleles	CCTTTTTTTTT/ C
MAF	C: 0.008
5' Flank	CGTAGAAAAAGTGGCCTGCCGGTATGCCCA
3' Flank	CATGTAGTTTTTTTGTCGGTTCGGAATTTG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
2	103	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
3	107	Improved	N\|N
4	11	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
5	110	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
6	123	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
7	131	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
8	132	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
9	135	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
10	137	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
11	138	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
12	14	Improved	N\|N
13	140	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
14	141	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
15	144	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
16	150	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
17	154	Improved	N\|N
18	159	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
19	16	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
20	161	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
21	167	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
22	168	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
23	170	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
24	173	Improved	N\|N
25	175	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
26	176	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
27	182	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
28	186	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
29	190	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
30	192	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
31	194	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
32	195	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
33	197	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
34	J22	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
35	J26	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
36	J5	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
37	J50	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
38	2001	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
39	2005	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
40	2008	Improved	N\|N
41	2009	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
42	201	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
43	2010	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
44	2016	Improved	N\|N
45	2019	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
46	202	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
47	2021	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
48	2023	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
49	2026	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
50	2029	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
51	2030	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
52	2031	Landrace	N\|N
53	2036	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
54	2037	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
55	2038	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
56	2039	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
57	204	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
58	2042	Improved	N\|N
59	2043	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
60	2048	Improved	N\|N
61	2049	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
62	205	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
63	2050	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
64	2052	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
65	2054	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
66	2056	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
67	2059	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
68	206	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
69	2064	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
70	2065	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
71	2067	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
72	2068	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
73	2069	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
74	2071	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
75	2074	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
76	2075	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
77	2076	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
78	2080	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
79	2081	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
80	2082	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
81	2086	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
82	2088	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
83	260	Wild sorghum	N\|N
84	261	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
85	262	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
86	263	Improved	N\|N
87	286	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
88	29	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
89	3	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
90	302546	S.propinquum	N\|N
91	31	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
92	32	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
93	34	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
94	346	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
95	348	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
96	353	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
97	355	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
98	357	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
99	364	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
100	367	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
101	s37	S.propinquum	N\|N
102	s38	S.propinquum	N\|N
103	370	Landrace	N\|N
104	377	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
105	392	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
106	394	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
107	40	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
108	42	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
109	43	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
110	45	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
111	47	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
112	48	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
113	51	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
114	53	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
115	56	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
116	61	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
117	62	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
118	66	Landrace	N\|N
119	67	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
120	68	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
121	70	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
122	73	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
123	75	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
124	88	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
125	89	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
126	91	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
127	92	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
128	93	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
129	94	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
130	95	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
131	96	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
132	97	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
133	s1	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
134	s36	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
135	s2	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
136	s3	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
137	s32	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
138	s43	Weedy	CCTTTTTTTTT\|CCTTTTTTTTT
139	s40	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
140	s41	Weedy	CCTTTTTTTTT\|CCTTTTTTTTT
141	s39	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
142	s42	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
143	s47	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
144	s5	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
145	GW102	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
146	GW103	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
147	GW104	Landrace	N\|N
148	GW105	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
149	GW16	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
150	GW2	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
151	GW34	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
152	GW37	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
153	GW58	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
154	GW59	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
155	GW9	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
156	s4	Weedy	CCTTTTTTTTT\|CCTTTTTTTTT
157	s6	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
158	s7	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
159	s8	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
160	s9	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
161	J101	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
162	J103	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
163	J112	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
164	J113	Improved	N\|N
165	J129	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
166	J130	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
167	J136	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
168	J152	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
169	J2	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
170	J20	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
171	J4	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
172	J42	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
173	J44	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
174	J49	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
175	J52	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
176	J53	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
177	J54	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
178	J57	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
179	J59	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
180	J64	Landrace	N\|N
181	J66	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
182	J67	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
183	J69	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
184	J87	Landrace	N\|N
185	J99	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
186	s45	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
187	s11	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
188	s10	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
189	s46	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
190	s12	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
191	s13	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
192	MHMD	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
193	s14	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
194	s15	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
195	s34	Weedy	CCTTTTTTTTT\|CCTTTTTTTTT
196	s33	Wild sorghum	C\|C
197	s21	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
198	s16	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
199	s44	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
200	s35	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
201	s31	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
202	s17	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
203	s18	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
204	s20	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
205	s19	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
206	s22	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
207	s23	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
208	s24	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
209	s25	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
210	s26	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
211	s27	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
212	s28	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
213	s29	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
214	s30	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
215	SL25	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
218	SL109	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
219	SL12	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
220	SL129	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
221	SL130	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
222	SL135	Wild sorghum	N\|N
223	SL136	Wild sorghum	N\|N
224	SL137	Wild sorghum	N\|N
225	SL138	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
226	SL140	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
227	SL141	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
228	SL19	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
229	SL28	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
230	SL32	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
233	SL37	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
234	SL39	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
235	SL41	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
236	SL43	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
237	SL47	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
238	SL49	Wild sorghum	N\|N
239	SL51	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
240	SL53	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
241	SL62	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
242	SL83	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
243	SL97	Landrace	N\|N
244	s48	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
245	Tu13	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
246	Tu14	Wild sorghum	C\|C
247	Tu30	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
248	Tu5	Wild sorghum	CCTTTTTTTTT\|CCTTTTTTTTT
249	WSC5	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
250	WSC15	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
251	WSC19	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
252	WSC30	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
253	WSC52	Landrace	N\|N
254	WSC6	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
255	WSC61	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
256	WSC71	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
257	WSC72	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
258	WSC79	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
259	WSC94	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
260	WSC99	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
261	WSC100	Landrace	N\|N
262	WSC104	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
263	WSC105	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
264	WSC12	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
265	WSC13	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
266	WSC16	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
267	WSC17	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
268	WSC18	Landrace	N\|N
269	WSC20	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
270	WSC24	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
273	WSC31	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
274	WSC32	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
275	WSC34	Landrace	N\|N
276	WSC38	Landrace	N\|N
277	WSC39	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
278	WSC40	Landrace	N\|N
279	WSC54	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
280	WSC56	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
281	WSC59	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
282	WSC68	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
283	WSC70	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
284	WSC73	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
285	WSC81	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
286	WSC85	Improved	CCTTTTTTTTT\|CCTTTTTTTTT
287	WSC91	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
288	WSC93	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT
289	WSC98	Landrace	CCTTTTTTTTT\|CCTTTTTTTTT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825284	Sobic.001G000100	downstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

Genome Browser