sorgsd

Variation ID : sbi33825291

Variation Detail

Variation ID	sbi33825291
Type	INDEL
Position	Chr01 2970-2972
Ref /Alleles	CTT/ * or C
MAF	*: 0.007
5' Flank	TCACTAGTACGTAGAGAGGTACTATATATC
3' Flank	TGTACGTACACAGAGGTACTATATATCCTT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CTT\|CTT
2	103	Improved	CTT\|CTT
3	107	Improved	CTT\|CTT
4	11	Improved	CTT\|CTT
5	110	Improved	CTT\|CTT
6	123	Landrace	CTT\|CTT
7	131	Improved	CTT\|CTT
8	132	Improved	N\|N
9	135	Improved	CTT\|CTT
10	137	Improved	CTT\|CTT
11	138	Improved	CTT\|CTT
12	14	Improved	CTT\|CTT
13	140	Improved	CTT\|CTT
14	141	Improved	CTT\|CTT
15	144	Improved	CTT\|CTT
16	150	Improved	CTT\|CTT
17	154	Improved	N\|N
18	159	Landrace	CTT\|CTT
19	16	Improved	CTT\|CTT
20	161	Landrace	CTT\|CTT
21	167	Improved	CTT\|CTT
22	168	Improved	CTT\|CTT
23	170	Improved	CTT\|CTT
24	173	Improved	CTT\|CTT
25	175	Improved	CTT\|CTT
26	176	Improved	CTT\|CTT
27	182	Landrace	CTT\|CTT
28	186	Improved	CTT\|CTT
29	190	Improved	CTT\|CTT
30	192	Improved	CTT\|CTT
31	194	Improved	CTT\|CTT
32	195	Improved	CTT\|CTT
33	197	Improved	CTT\|CTT
34	J22	Landrace	CTT\|CTT
35	J26	Landrace	CTT\|CTT
36	J5	Landrace	CTT\|CTT
37	J50	Landrace	CTT\|CTT
38	2001	Landrace	CTT\|CTT
39	2005	Improved	CTT\|CTT
40	2008	Improved	CTT\|CTT
41	2009	Landrace	\|
42	201	Improved	CTT\|CTT
43	2010	Landrace	CTT\|CTT
44	2016	Improved	CTT\|CTT
45	2019	Improved	CTT\|CTT
46	202	Improved	CTT\|CTT
47	2021	Improved	CTT\|CTT
48	2023	Improved	CTT\|CTT
49	2026	Improved	CTT\|CTT
50	2029	Improved	CTT\|CTT
51	2030	Landrace	CTT\|CTT
52	2031	Landrace	N\|N
53	2036	Improved	CTT\|CTT
54	2037	Improved	CTT\|CTT
55	2038	Improved	CTT\|CTT
56	2039	Improved	CTT\|CTT
57	204	Improved	CTT\|CTT
58	2042	Improved	CTT\|CTT
59	2043	Improved	CTT\|CTT
60	2048	Improved	CTT\|CTT
61	2049	Improved	CTT\|CTT
62	205	Improved	CTT\|CTT
63	2050	Improved	CTT\|CTT
64	2052	Improved	CTT\|CTT
65	2054	Improved	CTT\|CTT
66	2056	Improved	N\|N
67	2059	Improved	CTT\|CTT
68	206	Improved	CTT\|CTT
69	2064	Improved	CTT\|CTT
70	2065	Improved	CTT\|CTT
71	2067	Improved	CTT\|CTT
72	2068	Improved	CTT\|CTT
73	2069	Improved	CTT\|CTT
74	2071	Improved	CTT\|CTT
75	2074	Improved	CTT\|CTT
76	2075	Improved	CTT\|CTT
77	2076	Improved	CTT\|CTT
78	2080	Improved	CTT\|CTT
79	2081	Improved	CTT\|CTT
80	2082	Improved	CTT\|CTT
81	2086	Improved	CTT\|CTT
82	2088	Improved	CTT\|CTT
83	260	Wild sorghum	CTT\|CTT
84	261	Improved	CTT\|CTT
85	262	Improved	CTT\|CTT
86	263	Improved	CTT\|CTT
87	286	Improved	CTT\|CTT
88	29	Improved	CTT\|CTT
89	3	Improved	CTT\|CTT
90	302546	S.propinquum	N\|N
91	31	Improved	CTT\|CTT
92	32	Improved	CTT\|CTT
93	34	Improved	CTT\|CTT
94	346	Landrace	CTT\|CTT
95	348	Wild sorghum	CTT\|CTT
96	353	Wild sorghum	CTT\|CTT
97	355	Wild sorghum	CTT\|CTT
98	357	Wild sorghum	CTT\|CTT
99	364	Wild sorghum	CTT\|CTT
100	367	Landrace	CTT\|CTT
101	s37	S.propinquum	CTT\|CTT
102	s38	S.propinquum	CTT\|CTT
103	370	Landrace	CTT\|CTT
104	377	Wild sorghum	CTT\|CTT
105	392	Wild sorghum	CTT\|CTT
106	394	Wild sorghum	CTT\|CTT
107	40	Improved	CTT\|CTT
108	42	Improved	CTT\|CTT
109	43	Improved	CTT\|CTT
110	45	Improved	CTT\|CTT
111	47	Improved	CTT\|CTT
112	48	Improved	CTT\|CTT
113	51	Improved	CTT\|CTT
114	53	Improved	CTT\|CTT
115	56	Improved	CTT\|CTT
116	61	Improved	CTT\|CTT
117	62	Improved	CTT\|CTT
118	66	Landrace	CTT\|CTT
119	67	Improved	CTT\|CTT
120	68	Improved	CTT\|CTT
121	70	Improved	CTT\|CTT
122	73	Improved	CTT\|CTT
123	75	Improved	CTT\|CTT
124	88	Improved	CTT\|CTT
125	89	Improved	CTT\|CTT
126	91	Improved	N\|N
127	92	Improved	CTT\|CTT
128	93	Improved	CTT\|CTT
129	94	Improved	CTT\|CTT
130	95	Improved	CTT\|CTT
131	96	Improved	CTT\|CTT
132	97	Improved	CTT\|CTT
133	s1	Improved	CTT\|CTT
134	s36	Wild sorghum	CTT\|CTT
135	s2	Landrace	CTT\|CTT
136	s3	Improved	CTT\|CTT
137	s32	Improved	CTT\|CTT
138	s43	Weedy	CTT\|CTT
139	s40	Landrace	N\|N
140	s41	Weedy	CTT\|CTT
141	s39	Landrace	CTT\|CTT
142	s42	Landrace	CTT\|CTT
143	s47	Improved	CTT\|CTT
144	s5	Landrace	CTT\|CTT
145	GW102	Landrace	CTT\|CTT
146	GW103	Landrace	CTT\|CTT
147	GW104	Landrace	CTT\|CTT
148	GW105	Landrace	CTT\|CTT
149	GW16	Landrace	CTT\|CTT
150	GW2	Landrace	CTT\|CTT
151	GW34	Landrace	CTT\|CTT
152	GW37	Landrace	CTT\|CTT
153	GW58	Landrace	CTT\|CTT
154	GW59	Landrace	N\|N
155	GW9	Landrace	CTT\|CTT
156	s4	Weedy	CTT\|CTT
157	s6	Improved	CTT\|CTT
158	s7	Landrace	CTT\|CTT
159	s8	Landrace	CTT\|CTT
160	s9	Landrace	CTT\|CTT
161	J101	Landrace	N\|N
162	J103	Improved	CTT\|CTT
163	J112	Landrace	CTT\|CTT
164	J113	Improved	CTT\|CTT
165	J129	Improved	CTT\|CTT
166	J130	Improved	CTT\|CTT
167	J136	Improved	CTT\|CTT
168	J152	Improved	CTT\|CTT
169	J2	Landrace	CTT\|CTT
170	J20	Landrace	CTT\|CTT
171	J4	Landrace	CTT\|CTT
172	J42	Landrace	CTT\|CTT
173	J44	Landrace	CTT\|CTT
174	J49	Landrace	CTT\|CTT
175	J52	Landrace	CTT\|CTT
176	J53	Landrace	CTT\|CTT
177	J54	Landrace	CTT\|CTT
178	J57	Landrace	CTT\|CTT
179	J59	Landrace	CTT\|CTT
180	J64	Landrace	N\|N
181	J66	Landrace	CTT\|CTT
182	J67	Landrace	CTT\|CTT
183	J69	Landrace	CTT\|CTT
184	J87	Landrace	CTT\|CTT
185	J99	Landrace	CTT\|CTT
186	s45	Landrace	CTT\|CTT
187	s11	Improved	CTT\|CTT
188	s10	Improved	CTT\|CTT
189	s46	Improved	CTT\|CTT
190	s12	Improved	CTT\|CTT
191	s13	Landrace	CTT\|CTT
192	MHMD	Landrace	CTT\|CTT
193	s14	Improved	CTT\|CTT
194	s15	Improved	CTT\|CTT
195	s34	Weedy	CTT\|CTT
196	s33	Wild sorghum	CTT\|CTT
197	s21	Wild sorghum	CTT\|CTT
198	s16	Wild sorghum	CTT\|CTT
199	s44	Improved	CTT\|CTT
200	s35	Landrace	CTT\|CTT
201	s31	Wild sorghum	CTT\|CTT
202	s17	Improved	CTT\|CTT
203	s18	Improved	CTT\|CTT
204	s20	Improved	CTT\|CTT
205	s19	Improved	CTT\|CTT
206	s22	Landrace	CTT\|CTT
207	s23	Landrace	CTT\|CTT
208	s24	Landrace	CTT\|CTT
209	s25	Landrace	CTT\|CTT
210	s26	Landrace	CTT\|CTT
211	s27	Landrace	CTT\|CTT
212	s28	Landrace	CTT\|CTT
213	s29	Landrace	CTT\|CTT
214	s30	Landrace	CTT\|CTT
215	SL25	Wild sorghum	CTT\|CTT
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	CTT\|CTT
218	SL109	Wild sorghum	CTT\|CTT
219	SL12	Wild sorghum	CTT\|CTT
220	SL129	Wild sorghum	CTT\|CTT
221	SL130	Wild sorghum	CTT\|CTT
222	SL135	Wild sorghum	CTT\|CTT
223	SL136	Wild sorghum	CTT\|CTT
224	SL137	Wild sorghum	CTT\|CTT
225	SL138	Wild sorghum	CTT\|CTT
226	SL140	Wild sorghum	CTT\|CTT
227	SL141	Wild sorghum	CTT\|CTT
228	SL19	Wild sorghum	CTT\|CTT
229	SL28	Wild sorghum	CTT\|CTT
230	SL32	Wild sorghum	\|
231	SL35	Wild sorghum	CTT\|CTT
232	SL36	Wild sorghum	CTT\|CTT
233	SL37	Wild sorghum	CTT\|CTT
234	SL39	Wild sorghum	CTT\|CTT
235	SL41	Wild sorghum	CTT\|CTT
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	CTT\|CTT
238	SL49	Wild sorghum	N\|N
239	SL51	Wild sorghum	CTT\|CTT
240	SL53	Wild sorghum	CTT\|CTT
241	SL62	Wild sorghum	CTT\|CTT
242	SL83	Wild sorghum	CTT\|CTT
243	SL97	Landrace	C\|C
244	s48	Improved	CTT\|CTT
245	Tu13	Wild sorghum	CTT\|CTT
246	Tu14	Wild sorghum	CTT\|CTT
247	Tu30	Wild sorghum	CTT\|CTT
248	Tu5	Wild sorghum	CTT\|CTT
249	WSC5	Landrace	CTT\|CTT
250	WSC15	Landrace	CTT\|CTT
251	WSC19	Landrace	CTT\|CTT
252	WSC30	Landrace	CTT\|CTT
253	WSC52	Landrace	N\|N
254	WSC6	Landrace	CTT\|CTT
255	WSC61	Landrace	CTT\|CTT
256	WSC71	Improved	CTT\|CTT
257	WSC72	Landrace	CTT\|CTT
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	CTT\|CTT
260	WSC99	Landrace	CTT\|CTT
261	WSC100	Landrace	N\|N
262	WSC104	Landrace	N\|N
263	WSC105	Landrace	CTT\|CTT
264	WSC12	Landrace	CTT\|CTT
265	WSC13	Landrace	CTT\|CTT
266	WSC16	Landrace	CTT\|CTT
267	WSC17	Landrace	CTT\|CTT
268	WSC18	Landrace	CTT\|CTT
269	WSC20	Landrace	CTT\|CTT
270	WSC24	Landrace	CTT\|CTT
271	WSC25	Landrace	CTT\|CTT
272	WSC29	Landrace	CTT\|CTT
273	WSC31	Landrace	CTT\|CTT
274	WSC32	Landrace	CTT\|CTT
275	WSC34	Landrace	CTT\|CTT
276	WSC38	Landrace	CTT\|CTT
277	WSC39	Improved	CTT\|CTT
278	WSC40	Landrace	CTT\|CTT
279	WSC54	Landrace	CTT\|CTT
280	WSC56	Landrace	CTT\|CTT
281	WSC59	Landrace	CTT\|CTT
282	WSC68	Landrace	CTT\|CTT
283	WSC70	Landrace	CTT\|CTT
284	WSC73	Landrace	CTT\|CTT
285	WSC81	Landrace	CTT\|CTT
286	WSC85	Improved	CTT\|CTT
287	WSC91	Landrace	CTT\|CTT
288	WSC93	Landrace	CTT\|CTT
289	WSC98	Landrace	CTT\|CTT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825291	Sobic.001G000100	downstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

Genome Browser