Variation ID : sbi33825295

Variation Detail



Variation ID sbi33825295
Type INDEL
Position Chr01 3065-3069
Ref /Alleles GCAGA/ * or G
MAF *: 0.043
5' Flank CACCTGTGCTGTTCGTCTGTGGAAATAAAC
3' Flank TTGACGAATCGTTTCGCCCGTGGAAATAAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved GCAGA|GCAGA
2 103 Improved GCAGA|*
3 107 Improved GCAGA|GCAGA
4 11 Improved GCAGA|GCAGA
5 110 Improved GCAGA|GCAGA
6 123 Landrace GCAGA|GCAGA
7 131 Improved GCAGA|GCAGA
8 132 Improved GCAGA|GCAGA
9 135 Improved GCAGA|GCAGA
10 137 Improved GCAGA|GCAGA
11 138 Improved GCAGA|GCAGA
12 14 Improved GCAGA|GCAGA
13 140 Improved GCAGA|GCAGA
14 141 Improved GCAGA|GCAGA
15 144 Improved GCAGA|*
16 150 Improved GCAGA|*
17 154 Improved GCAGA|GCAGA
18 159 Landrace GCAGA|GCAGA
19 16 Improved GCAGA|GCAGA
20 161 Landrace GCAGA|GCAGA
21 167 Improved GCAGA|GCAGA
22 168 Improved GCAGA|GCAGA
23 170 Improved GCAGA|GCAGA
24 173 Improved GCAGA|GCAGA
25 175 Improved GCAGA|*
26 176 Improved GCAGA|GCAGA
27 182 Landrace GCAGA|GCAGA
28 186 Improved GCAGA|GCAGA
29 190 Improved GCAGA|GCAGA
30 192 Improved GCAGA|GCAGA
31 194 Improved GCAGA|GCAGA
32 195 Improved GCAGA|GCAGA
33 197 Improved GCAGA|GCAGA
34 J22 Landrace GCAGA|GCAGA
35 J26 Landrace GCAGA|GCAGA
36 J5 Landrace GCAGA|GCAGA
37 J50 Landrace GCAGA|GCAGA
38 2001 Landrace GCAGA|GCAGA
39 2005 Improved GCAGA|GCAGA
40 2008 Improved GCAGA|GCAGA
41 2009 Landrace GCAGA|GCAGA
42 201 Improved GCAGA|GCAGA
43 2010 Landrace GCAGA|*
44 2016 Improved GCAGA|GCAGA
45 2019 Improved GCAGA|GCAGA
46 202 Improved GCAGA|GCAGA
47 2021 Improved GCAGA|GCAGA
48 2023 Improved GCAGA|GCAGA
49 2026 Improved GCAGA|GCAGA
50 2029 Improved GCAGA|GCAGA
51 2030 Landrace GCAGA|*
52 2031 Landrace GCAGA|GCAGA
53 2036 Improved GCAGA|GCAGA
54 2037 Improved GCAGA|*
55 2038 Improved GCAGA|*
56 2039 Improved GCAGA|GCAGA
57 204 Improved GCAGA|GCAGA
58 2042 Improved GCAGA|GCAGA
59 2043 Improved GCAGA|GCAGA
60 2048 Improved GCAGA|GCAGA
61 2049 Improved GCAGA|GCAGA
62 205 Improved GCAGA|GCAGA
63 2050 Improved N|N
64 2052 Improved GCAGA|GCAGA
65 2054 Improved GCAGA|GCAGA
66 2056 Improved N|N
67 2059 Improved GCAGA|GCAGA
68 206 Improved GCAGA|GCAGA
69 2064 Improved GCAGA|GCAGA
70 2065 Improved GCAGA|GCAGA
71 2067 Improved GCAGA|GCAGA
72 2068 Improved GCAGA|GCAGA
73 2069 Improved GCAGA|GCAGA
74 2071 Improved GCAGA|*
75 2074 Improved GCAGA|GCAGA
76 2075 Improved GCAGA|GCAGA
77 2076 Improved GCAGA|GCAGA
78 2080 Improved GCAGA|GCAGA
79 2081 Improved GCAGA|GCAGA
80 2082 Improved GCAGA|GCAGA
81 2086 Improved GCAGA|GCAGA
82 2088 Improved GCAGA|GCAGA
83 260 Wild sorghum GCAGA|GCAGA
84 261 Improved GCAGA|GCAGA
85 262 Improved GCAGA|GCAGA
86 263 Improved GCAGA|GCAGA
87 286 Improved GCAGA|GCAGA
88 29 Improved GCAGA|GCAGA
89 3 Improved GCAGA|GCAGA
90 302546 S.propinquum N|N
91 31 Improved GCAGA|*
92 32 Improved GCAGA|GCAGA
93 34 Improved GCAGA|GCAGA
94 346 Landrace GCAGA|GCAGA
95 348 Wild sorghum GCAGA|GCAGA
96 353 Wild sorghum GCAGA|GCAGA
97 355 Wild sorghum GCAGA|GCAGA
98 357 Wild sorghum GCAGA|GCAGA
99 364 Wild sorghum GCAGA|GCAGA
100 367 Landrace N|N
101 s37 S.propinquum GCAGA|GCAGA
102 s38 S.propinquum GCAGA|GCAGA
103 370 Landrace GCAGA|GCAGA
104 377 Wild sorghum GCAGA|GCAGA
105 392 Wild sorghum GCAGA|GCAGA
106 394 Wild sorghum GCAGA|GCAGA
107 40 Improved GCAGA|GCAGA
108 42 Improved GCAGA|GCAGA
109 43 Improved GCAGA|GCAGA
110 45 Improved GCAGA|*
111 47 Improved GCAGA|GCAGA
112 48 Improved GCAGA|GCAGA
113 51 Improved GCAGA|GCAGA
114 53 Improved GCAGA|*
115 56 Improved N|N
116 61 Improved GCAGA|GCAGA
117 62 Improved GCAGA|GCAGA
118 66 Landrace GCAGA|GCAGA
119 67 Improved GCAGA|GCAGA
120 68 Improved GCAGA|GCAGA
121 70 Improved GCAGA|GCAGA
122 73 Improved GCAGA|GCAGA
123 75 Improved GCAGA|GCAGA
124 88 Improved GCAGA|GCAGA
125 89 Improved GCAGA|GCAGA
126 91 Improved GCAGA|GCAGA
127 92 Improved GCAGA|GCAGA
128 93 Improved GCAGA|GCAGA
129 94 Improved GCAGA|*
130 95 Improved GCAGA|*
131 96 Improved GCAGA|*
132 97 Improved GCAGA|GCAGA
133 s1 Improved GCAGA|GCAGA
134 s36 Wild sorghum GCAGA|GCAGA
135 s2 Landrace GCAGA|GCAGA
136 s3 Improved GCAGA|GCAGA
137 s32 Improved GCAGA|GCAGA
138 s43 Weedy GCAGA|GCAGA
139 s40 Landrace GCAGA|GCAGA
140 s41 Weedy GCAGA|GCAGA
141 s39 Landrace GCAGA|GCAGA
142 s42 Landrace GCAGA|*
143 s47 Improved GCAGA|GCAGA
144 s5 Landrace GCAGA|GCAGA
145 GW102 Landrace GCAGA|GCAGA
146 GW103 Landrace GCAGA|GCAGA
147 GW104 Landrace GCAGA|GCAGA
148 GW105 Landrace GCAGA|GCAGA
149 GW16 Landrace GCAGA|GCAGA
150 GW2 Landrace GCAGA|GCAGA
151 GW34 Landrace GCAGA|GCAGA
152 GW37 Landrace GCAGA|GCAGA
153 GW58 Landrace GCAGA|GCAGA
154 GW59 Landrace GCAGA|GCAGA
155 GW9 Landrace GCAGA|GCAGA
156 s4 Weedy GCAGA|GCAGA
157 s6 Improved GCAGA|GCAGA
158 s7 Landrace GCAGA|GCAGA
159 s8 Landrace GCAGA|GCAGA
160 s9 Landrace GCAGA|GCAGA
161 J101 Landrace GCAGA|GCAGA
162 J103 Improved GCAGA|GCAGA
163 J112 Landrace GCAGA|GCAGA
164 J113 Improved GCAGA|GCAGA
165 J129 Improved GCAGA|GCAGA
166 J130 Improved GCAGA|GCAGA
167 J136 Improved GCAGA|GCAGA
168 J152 Improved GCAGA|GCAGA
169 J2 Landrace GCAGA|GCAGA
170 J20 Landrace GCAGA|GCAGA
171 J4 Landrace GCAGA|GCAGA
172 J42 Landrace GCAGA|GCAGA
173 J44 Landrace GCAGA|GCAGA
174 J49 Landrace GCAGA|GCAGA
175 J52 Landrace GCAGA|GCAGA
176 J53 Landrace GCAGA|GCAGA
177 J54 Landrace GCAGA|GCAGA
178 J57 Landrace GCAGA|GCAGA
179 J59 Landrace GCAGA|GCAGA
180 J64 Landrace GCAGA|GCAGA
181 J66 Landrace N|N
182 J67 Landrace GCAGA|GCAGA
183 J69 Landrace GCAGA|GCAGA
184 J87 Landrace GCAGA|GCAGA
185 J99 Landrace GCAGA|GCAGA
186 s45 Landrace GCAGA|GCAGA
187 s11 Improved GCAGA|GCAGA
188 s10 Improved GCAGA|GCAGA
189 s46 Improved GCAGA|GCAGA
190 s12 Improved GCAGA|GCAGA
191 s13 Landrace GCAGA|GCAGA
192 MHMD Landrace GCAGA|*
193 s14 Improved GCAGA|GCAGA
194 s15 Improved GCAGA|GCAGA
195 s34 Weedy GCAGA|GCAGA
196 s33 Wild sorghum GCAGA|GCAGA
197 s21 Wild sorghum GCAGA|GCAGA
198 s16 Wild sorghum GCAGA|GCAGA
199 s44 Improved GCAGA|GCAGA
200 s35 Landrace GCAGA|GCAGA
201 s31 Wild sorghum GCAGA|GCAGA
202 s17 Improved GCAGA|GCAGA
203 s18 Improved GCAGA|GCAGA
204 s20 Improved GCAGA|GCAGA
205 s19 Improved GCAGA|GCAGA
206 s22 Landrace GCAGA|*
207 s23 Landrace GCAGA|*
208 s24 Landrace GCAGA|GCAGA
209 s25 Landrace GCAGA|GCAGA
210 s26 Landrace GCAGA|*
211 s27 Landrace GCAGA|*
212 s28 Landrace GCAGA|GCAGA
213 s29 Landrace GCAGA|GCAGA
214 s30 Landrace GCAGA|GCAGA
215 SL25 Wild sorghum G|G
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum GCAGA|GCAGA
218 SL109 Wild sorghum GCAGA|GCAGA
219 SL12 Wild sorghum GCAGA|GCAGA
220 SL129 Wild sorghum GCAGA|GCAGA
221 SL130 Wild sorghum GCAGA|GCAGA
222 SL135 Wild sorghum GCAGA|GCAGA
223 SL136 Wild sorghum GCAGA|GCAGA
224 SL137 Wild sorghum GCAGA|GCAGA
225 SL138 Wild sorghum GCAGA|GCAGA
226 SL140 Wild sorghum GCAGA|GCAGA
227 SL141 Wild sorghum GCAGA|GCAGA
228 SL19 Wild sorghum GCAGA|GCAGA
229 SL28 Wild sorghum GCAGA|GCAGA
230 SL32 Wild sorghum GCAGA|GCAGA
231 SL35 Wild sorghum GCAGA|GCAGA
232 SL36 Wild sorghum GCAGA|GCAGA
233 SL37 Wild sorghum GCAGA|GCAGA
234 SL39 Wild sorghum GCAGA|GCAGA
235 SL41 Wild sorghum GCAGA|GCAGA
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum GCAGA|GCAGA
238 SL49 Wild sorghum GCAGA|GCAGA
239 SL51 Wild sorghum GCAGA|GCAGA
240 SL53 Wild sorghum GCAGA|GCAGA
241 SL62 Wild sorghum GCAGA|GCAGA
242 SL83 Wild sorghum GCAGA|GCAGA
243 SL97 Landrace N|N
244 s48 Improved GCAGA|GCAGA
245 Tu13 Wild sorghum GCAGA|GCAGA
246 Tu14 Wild sorghum GCAGA|GCAGA
247 Tu30 Wild sorghum GCAGA|GCAGA
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace GCAGA|GCAGA
250 WSC15 Landrace GCAGA|GCAGA
251 WSC19 Landrace GCAGA|GCAGA
252 WSC30 Landrace GCAGA|GCAGA
253 WSC52 Landrace N|N
254 WSC6 Landrace GCAGA|GCAGA
255 WSC61 Landrace GCAGA|GCAGA
256 WSC71 Improved GCAGA|GCAGA
257 WSC72 Landrace GCAGA|GCAGA
258 WSC79 Landrace GCAGA|GCAGA
259 WSC94 Landrace GCAGA|GCAGA
260 WSC99 Landrace GCAGA|*
261 WSC100 Landrace GCAGA|GCAGA
262 WSC104 Landrace GCAGA|GCAGA
263 WSC105 Landrace GCAGA|GCAGA
264 WSC12 Landrace GCAGA|GCAGA
265 WSC13 Landrace GCAGA|GCAGA
266 WSC16 Landrace GCAGA|GCAGA
267 WSC17 Landrace GCAGA|GCAGA
268 WSC18 Landrace GCAGA|GCAGA
269 WSC20 Landrace GCAGA|GCAGA
270 WSC24 Landrace GCAGA|GCAGA
271 WSC25 Landrace GCAGA|GCAGA
272 WSC29 Landrace GCAGA|GCAGA
273 WSC31 Landrace GCAGA|GCAGA
274 WSC32 Landrace GCAGA|GCAGA
275 WSC34 Landrace GCAGA|GCAGA
276 WSC38 Landrace GCAGA|GCAGA
277 WSC39 Improved GCAGA|GCAGA
278 WSC40 Landrace GCAGA|GCAGA
279 WSC54 Landrace GCAGA|GCAGA
280 WSC56 Landrace GCAGA|GCAGA
281 WSC59 Landrace GCAGA|GCAGA
282 WSC68 Landrace GCAGA|GCAGA
283 WSC70 Landrace GCAGA|GCAGA
284 WSC73 Landrace GCAGA|GCAGA
285 WSC81 Landrace GCAGA|GCAGA
286 WSC85 Improved GCAGA|*
287 WSC91 Landrace GCAGA|*
288 WSC93 Landrace GCAGA|GCAGA
289 WSC98 Landrace GCAGA|GCAGA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825295 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser