Variation ID : sbi33825300

Variation Detail



Variation ID sbi33825300
Type INDEL
Position Chr01 3584-3585
Ref /Alleles CG/ C
MAF C: 0.076
5' Flank AATTTCAATTTCAAGTTTGAGAAATTCAAA
3' Flank TAGTTTTCGACGACAAGATGATTTCAAATG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved C|C
2 103 Improved N|N
3 107 Improved CG|CG
4 11 Improved CG|CG
5 110 Improved CG|CG
6 123 Landrace CG|CG
7 131 Improved CG|CG
8 132 Improved CG|CG
9 135 Improved CG|CG
10 137 Improved CG|CG
11 138 Improved CG|CG
12 14 Improved CG|CG
13 140 Improved CG|CG
14 141 Improved C|C
15 144 Improved CG|C
16 150 Improved CG|C
17 154 Improved CG|CG
18 159 Landrace CG|CG
19 16 Improved CG|CG
20 161 Landrace CG|CG
21 167 Improved CG|CG
22 168 Improved CG|CG
23 170 Improved CG|CG
24 173 Improved N|N
25 175 Improved CG|C
26 176 Improved N|N
27 182 Landrace N|N
28 186 Improved CG|CG
29 190 Improved N|N
30 192 Improved CG|CG
31 194 Improved N|N
32 195 Improved CG|CG
33 197 Improved CG|CG
34 J22 Landrace CG|CG
35 J26 Landrace CG|CG
36 J5 Landrace CG|CG
37 J50 Landrace CG|CG
38 2001 Landrace CG|CG
39 2005 Improved CG|CG
40 2008 Improved N|N
41 2009 Landrace CG|CG
42 201 Improved N|N
43 2010 Landrace CG|C
44 2016 Improved N|N
45 2019 Improved CG|CG
46 202 Improved CG|CG
47 2021 Improved N|N
48 2023 Improved CG|CG
49 2026 Improved CG|CG
50 2029 Improved CG|CG
51 2030 Landrace CG|CG
52 2031 Landrace CG|CG
53 2036 Improved CG|CG
54 2037 Improved CG|C
55 2038 Improved C|C
56 2039 Improved CG|CG
57 204 Improved CG|CG
58 2042 Improved CG|CG
59 2043 Improved CG|CG
60 2048 Improved CG|CG
61 2049 Improved CG|CG
62 205 Improved CG|CG
63 2050 Improved CG|CG
64 2052 Improved CG|CG
65 2054 Improved N|N
66 2056 Improved CG|CG
67 2059 Improved CG|CG
68 206 Improved CG|CG
69 2064 Improved CG|CG
70 2065 Improved CG|CG
71 2067 Improved CG|CG
72 2068 Improved CG|CG
73 2069 Improved CG|CG
74 2071 Improved CG|C
75 2074 Improved CG|CG
76 2075 Improved CG|CG
77 2076 Improved CG|CG
78 2080 Improved CG|CG
79 2081 Improved N|N
80 2082 Improved CG|CG
81 2086 Improved CG|CG
82 2088 Improved CG|CG
83 260 Wild sorghum N|N
84 261 Improved CG|CG
85 262 Improved CG|CG
86 263 Improved CG|CG
87 286 Improved CG|CG
88 29 Improved CG|CG
89 3 Improved CG|CG
90 302546 S.propinquum N|N
91 31 Improved CG|C
92 32 Improved CG|CG
93 34 Improved CG|CG
94 346 Landrace N|N
95 348 Wild sorghum CG|CG
96 353 Wild sorghum CG|CG
97 355 Wild sorghum CG|CG
98 357 Wild sorghum CG|CG
99 364 Wild sorghum N|N
100 367 Landrace CG|CG
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum CG|CG
105 392 Wild sorghum CG|CG
106 394 Wild sorghum CG|CG
107 40 Improved CG|CG
108 42 Improved CG|C
109 43 Improved CG|CG
110 45 Improved CG|C
111 47 Improved CG|CG
112 48 Improved CG|CG
113 51 Improved CG|C
114 53 Improved CG|C
115 56 Improved CG|CG
116 61 Improved CG|CG
117 62 Improved CG|CG
118 66 Landrace CG|CG
119 67 Improved CG|CG
120 68 Improved CG|CG
121 70 Improved CG|CG
122 73 Improved CG|CG
123 75 Improved CG|CG
124 88 Improved CG|C
125 89 Improved C|C
126 91 Improved CG|CG
127 92 Improved CG|C
128 93 Improved CG|CG
129 94 Improved CG|C
130 95 Improved C|C
131 96 Improved CG|C
132 97 Improved CG|C
133 s1 Improved CG|CG
134 s36 Wild sorghum CG|CG
135 s2 Landrace CG|CG
136 s3 Improved CG|CG
137 s32 Improved CG|CG
138 s43 Weedy CG|CG
139 s40 Landrace CG|CG
140 s41 Weedy CG|CG
141 s39 Landrace CG|CG
142 s42 Landrace CG|C
143 s47 Improved CG|CG
144 s5 Landrace CG|C
145 GW102 Landrace CG|CG
146 GW103 Landrace CG|CG
147 GW104 Landrace CG|CG
148 GW105 Landrace CG|CG
149 GW16 Landrace CG|CG
150 GW2 Landrace CG|CG
151 GW34 Landrace CG|CG
152 GW37 Landrace CG|CG
153 GW58 Landrace CG|CG
154 GW59 Landrace CG|CG
155 GW9 Landrace CG|CG
156 s4 Weedy CG|CG
157 s6 Improved CG|CG
158 s7 Landrace CG|CG
159 s8 Landrace CG|CG
160 s9 Landrace CG|CG
161 J101 Landrace CG|CG
162 J103 Improved CG|CG
163 J112 Landrace CG|CG
164 J113 Improved CG|CG
165 J129 Improved CG|CG
166 J130 Improved CG|CG
167 J136 Improved CG|CG
168 J152 Improved CG|CG
169 J2 Landrace CG|CG
170 J20 Landrace N|N
171 J4 Landrace N|N
172 J42 Landrace CG|CG
173 J44 Landrace CG|CG
174 J49 Landrace CG|CG
175 J52 Landrace CG|CG
176 J53 Landrace CG|CG
177 J54 Landrace CG|CG
178 J57 Landrace CG|CG
179 J59 Landrace CG|CG
180 J64 Landrace CG|CG
181 J66 Landrace CG|CG
182 J67 Landrace CG|CG
183 J69 Landrace CG|CG
184 J87 Landrace N|N
185 J99 Landrace CG|CG
186 s45 Landrace CG|CG
187 s11 Improved CG|CG
188 s10 Improved CG|CG
189 s46 Improved CG|CG
190 s12 Improved CG|CG
191 s13 Landrace CG|CG
192 MHMD Landrace CG|C
193 s14 Improved CG|CG
194 s15 Improved CG|CG
195 s34 Weedy CG|CG
196 s33 Wild sorghum CG|CG
197 s21 Wild sorghum CG|CG
198 s16 Wild sorghum CG|CG
199 s44 Improved CG|CG
200 s35 Landrace CG|C
201 s31 Wild sorghum CG|CG
202 s17 Improved CG|CG
203 s18 Improved CG|CG
204 s20 Improved CG|CG
205 s19 Improved CG|CG
206 s22 Landrace CG|C
207 s23 Landrace CG|C
208 s24 Landrace CG|CG
209 s25 Landrace CG|CG
210 s26 Landrace CG|C
211 s27 Landrace CG|C
212 s28 Landrace CG|CG
213 s29 Landrace CG|CG
214 s30 Landrace CG|CG
215 SL25 Wild sorghum N|N
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum CG|CG
218 SL109 Wild sorghum CG|CG
219 SL12 Wild sorghum CG|CG
220 SL129 Wild sorghum CG|CG
221 SL130 Wild sorghum CG|CG
222 SL135 Wild sorghum CG|CG
223 SL136 Wild sorghum CG|CG
224 SL137 Wild sorghum CG|CG
225 SL138 Wild sorghum CG|CG
226 SL140 Wild sorghum CG|CG
227 SL141 Wild sorghum CG|CG
228 SL19 Wild sorghum CG|CG
229 SL28 Wild sorghum CG|CG
230 SL32 Wild sorghum CG|CG
231 SL35 Wild sorghum CG|CG
232 SL36 Wild sorghum CG|CG
233 SL37 Wild sorghum CG|CG
234 SL39 Wild sorghum CG|CG
235 SL41 Wild sorghum CG|CG
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum CG|CG
238 SL49 Wild sorghum CG|CG
239 SL51 Wild sorghum CG|CG
240 SL53 Wild sorghum CG|CG
241 SL62 Wild sorghum CG|CG
242 SL83 Wild sorghum CG|CG
243 SL97 Landrace CG|CG
244 s48 Improved CG|CG
245 Tu13 Wild sorghum CG|CG
246 Tu14 Wild sorghum CG|CG
247 Tu30 Wild sorghum CG|CG
248 Tu5 Wild sorghum CG|CG
249 WSC5 Landrace CG|CG
250 WSC15 Landrace CG|CG
251 WSC19 Landrace CG|CG
252 WSC30 Landrace CG|CG
253 WSC52 Landrace CG|CG
254 WSC6 Landrace CG|CG
255 WSC61 Landrace CG|CG
256 WSC71 Improved CG|CG
257 WSC72 Landrace N|N
258 WSC79 Landrace CG|C
259 WSC94 Landrace CG|CG
260 WSC99 Landrace CG|C
261 WSC100 Landrace CG|CG
262 WSC104 Landrace CG|CG
263 WSC105 Landrace CG|CG
264 WSC12 Landrace CG|CG
265 WSC13 Landrace CG|CG
266 WSC16 Landrace CG|CG
267 WSC17 Landrace CG|CG
268 WSC18 Landrace CG|CG
269 WSC20 Landrace CG|CG
270 WSC24 Landrace CG|CG
271 WSC25 Landrace CG|CG
272 WSC29 Landrace CG|CG
273 WSC31 Landrace CG|CG
274 WSC32 Landrace CG|CG
275 WSC34 Landrace CG|CG
276 WSC38 Landrace CG|CG
277 WSC39 Improved CG|CG
278 WSC40 Landrace CG|CG
279 WSC54 Landrace CG|CG
280 WSC56 Landrace CG|CG
281 WSC59 Landrace CG|CG
282 WSC68 Landrace N|N
283 WSC70 Landrace CG|CG
284 WSC73 Landrace CG|CG
285 WSC81 Landrace CG|C
286 WSC85 Improved CG|C
287 WSC91 Landrace CG|C
288 WSC93 Landrace CG|C
289 WSC98 Landrace CG|CG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825300 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser