sorgsd

Variation ID : sbi33825310

Variation Detail

Variation ID	sbi33825310
Type	INDEL
Position	Chr01 5407-5411
Ref /Alleles	TCCAG/ T
MAF	T: 0.007
5' Flank	GATTGTCACTTCCCCCGATGCTACCACAAA
3' Flank	CCAGATAAGGAGTATCTACGAGTGTTCTTA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	TCCAG\|TCCAG
2	103	Improved	TCCAG\|TCCAG
3	107	Improved	TCCAG\|TCCAG
4	11	Improved	TCCAG\|TCCAG
5	110	Improved	TCCAG\|TCCAG
6	123	Landrace	TCCAG\|TCCAG
7	131	Improved	TCCAG\|TCCAG
8	132	Improved	TCCAG\|TCCAG
9	135	Improved	TCCAG\|TCCAG
10	137	Improved	TCCAG\|TCCAG
11	138	Improved	TCCAG\|TCCAG
12	14	Improved	TCCAG\|TCCAG
13	140	Improved	TCCAG\|TCCAG
14	141	Improved	TCCAG\|TCCAG
15	144	Improved	TCCAG\|TCCAG
16	150	Improved	TCCAG\|TCCAG
17	154	Improved	TCCAG\|TCCAG
18	159	Landrace	TCCAG\|TCCAG
19	16	Improved	TCCAG\|TCCAG
20	161	Landrace	TCCAG\|TCCAG
21	167	Improved	TCCAG\|TCCAG
22	168	Improved	TCCAG\|TCCAG
23	170	Improved	TCCAG\|TCCAG
24	173	Improved	TCCAG\|TCCAG
25	175	Improved	TCCAG\|TCCAG
26	176	Improved	TCCAG\|TCCAG
27	182	Landrace	TCCAG\|TCCAG
28	186	Improved	TCCAG\|TCCAG
29	190	Improved	TCCAG\|TCCAG
30	192	Improved	TCCAG\|TCCAG
31	194	Improved	TCCAG\|TCCAG
32	195	Improved	TCCAG\|TCCAG
33	197	Improved	TCCAG\|TCCAG
34	J22	Landrace	TCCAG\|TCCAG
35	J26	Landrace	TCCAG\|TCCAG
36	J5	Landrace	TCCAG\|TCCAG
37	J50	Landrace	TCCAG\|TCCAG
38	2001	Landrace	TCCAG\|TCCAG
39	2005	Improved	TCCAG\|TCCAG
40	2008	Improved	TCCAG\|TCCAG
41	2009	Landrace	TCCAG\|TCCAG
42	201	Improved	TCCAG\|TCCAG
43	2010	Landrace	TCCAG\|TCCAG
44	2016	Improved	TCCAG\|TCCAG
45	2019	Improved	TCCAG\|TCCAG
46	202	Improved	TCCAG\|TCCAG
47	2021	Improved	TCCAG\|TCCAG
48	2023	Improved	TCCAG\|TCCAG
49	2026	Improved	TCCAG\|TCCAG
50	2029	Improved	TCCAG\|TCCAG
51	2030	Landrace	TCCAG\|TCCAG
52	2031	Landrace	TCCAG\|TCCAG
53	2036	Improved	TCCAG\|TCCAG
54	2037	Improved	TCCAG\|TCCAG
55	2038	Improved	TCCAG\|TCCAG
56	2039	Improved	TCCAG\|TCCAG
57	204	Improved	TCCAG\|TCCAG
58	2042	Improved	TCCAG\|TCCAG
59	2043	Improved	TCCAG\|TCCAG
60	2048	Improved	N\|N
61	2049	Improved	TCCAG\|TCCAG
62	205	Improved	TCCAG\|TCCAG
63	2050	Improved	TCCAG\|TCCAG
64	2052	Improved	TCCAG\|TCCAG
65	2054	Improved	TCCAG\|TCCAG
66	2056	Improved	TCCAG\|TCCAG
67	2059	Improved	TCCAG\|TCCAG
68	206	Improved	TCCAG\|TCCAG
69	2064	Improved	TCCAG\|TCCAG
70	2065	Improved	TCCAG\|TCCAG
71	2067	Improved	TCCAG\|TCCAG
72	2068	Improved	TCCAG\|TCCAG
73	2069	Improved	TCCAG\|TCCAG
74	2071	Improved	TCCAG\|TCCAG
75	2074	Improved	TCCAG\|TCCAG
76	2075	Improved	TCCAG\|TCCAG
77	2076	Improved	TCCAG\|TCCAG
78	2080	Improved	TCCAG\|TCCAG
79	2081	Improved	TCCAG\|TCCAG
80	2082	Improved	TCCAG\|TCCAG
81	2086	Improved	TCCAG\|TCCAG
82	2088	Improved	TCCAG\|TCCAG
83	260	Wild sorghum	TCCAG\|TCCAG
84	261	Improved	TCCAG\|TCCAG
85	262	Improved	TCCAG\|TCCAG
86	263	Improved	TCCAG\|TCCAG
87	286	Improved	TCCAG\|TCCAG
88	29	Improved	TCCAG\|TCCAG
89	3	Improved	TCCAG\|TCCAG
90	302546	S.propinquum	N\|N
91	31	Improved	TCCAG\|TCCAG
92	32	Improved	TCCAG\|TCCAG
93	34	Improved	TCCAG\|TCCAG
94	346	Landrace	TCCAG\|TCCAG
95	348	Wild sorghum	TCCAG\|TCCAG
96	353	Wild sorghum	TCCAG\|TCCAG
97	355	Wild sorghum	TCCAG\|TCCAG
98	357	Wild sorghum	TCCAG\|TCCAG
99	364	Wild sorghum	TCCAG\|TCCAG
100	367	Landrace	TCCAG\|TCCAG
101	s37	S.propinquum	T\|T
102	s38	S.propinquum	T\|T
103	370	Landrace	TCCAG\|TCCAG
104	377	Wild sorghum	TCCAG\|TCCAG
105	392	Wild sorghum	TCCAG\|TCCAG
106	394	Wild sorghum	TCCAG\|TCCAG
107	40	Improved	TCCAG\|TCCAG
108	42	Improved	TCCAG\|TCCAG
109	43	Improved	N\|N
110	45	Improved	TCCAG\|TCCAG
111	47	Improved	TCCAG\|TCCAG
112	48	Improved	TCCAG\|TCCAG
113	51	Improved	TCCAG\|TCCAG
114	53	Improved	TCCAG\|TCCAG
115	56	Improved	TCCAG\|TCCAG
116	61	Improved	TCCAG\|TCCAG
117	62	Improved	TCCAG\|TCCAG
118	66	Landrace	TCCAG\|TCCAG
119	67	Improved	TCCAG\|TCCAG
120	68	Improved	TCCAG\|TCCAG
121	70	Improved	N\|N
122	73	Improved	TCCAG\|TCCAG
123	75	Improved	TCCAG\|TCCAG
124	88	Improved	TCCAG\|TCCAG
125	89	Improved	TCCAG\|TCCAG
126	91	Improved	TCCAG\|TCCAG
127	92	Improved	TCCAG\|TCCAG
128	93	Improved	TCCAG\|TCCAG
129	94	Improved	TCCAG\|TCCAG
130	95	Improved	TCCAG\|TCCAG
131	96	Improved	TCCAG\|TCCAG
132	97	Improved	TCCAG\|TCCAG
133	s1	Improved	TCCAG\|TCCAG
134	s36	Wild sorghum	TCCAG\|TCCAG
135	s2	Landrace	TCCAG\|TCCAG
136	s3	Improved	TCCAG\|TCCAG
137	s32	Improved	TCCAG\|TCCAG
138	s43	Weedy	TCCAG\|TCCAG
139	s40	Landrace	TCCAG\|TCCAG
140	s41	Weedy	TCCAG\|TCCAG
141	s39	Landrace	TCCAG\|TCCAG
142	s42	Landrace	TCCAG\|TCCAG
143	s47	Improved	TCCAG\|TCCAG
144	s5	Landrace	TCCAG\|TCCAG
145	GW102	Landrace	TCCAG\|TCCAG
146	GW103	Landrace	TCCAG\|TCCAG
147	GW104	Landrace	TCCAG\|TCCAG
148	GW105	Landrace	TCCAG\|TCCAG
149	GW16	Landrace	N\|N
150	GW2	Landrace	TCCAG\|TCCAG
151	GW34	Landrace	TCCAG\|TCCAG
152	GW37	Landrace	TCCAG\|TCCAG
153	GW58	Landrace	TCCAG\|TCCAG
154	GW59	Landrace	TCCAG\|TCCAG
155	GW9	Landrace	TCCAG\|TCCAG
156	s4	Weedy	TCCAG\|TCCAG
157	s6	Improved	TCCAG\|TCCAG
158	s7	Landrace	TCCAG\|TCCAG
159	s8	Landrace	TCCAG\|TCCAG
160	s9	Landrace	TCCAG\|TCCAG
161	J101	Landrace	TCCAG\|TCCAG
162	J103	Improved	TCCAG\|TCCAG
163	J112	Landrace	TCCAG\|TCCAG
164	J113	Improved	TCCAG\|TCCAG
165	J129	Improved	TCCAG\|TCCAG
166	J130	Improved	TCCAG\|TCCAG
167	J136	Improved	TCCAG\|TCCAG
168	J152	Improved	TCCAG\|TCCAG
169	J2	Landrace	TCCAG\|TCCAG
170	J20	Landrace	TCCAG\|TCCAG
171	J4	Landrace	TCCAG\|TCCAG
172	J42	Landrace	TCCAG\|TCCAG
173	J44	Landrace	TCCAG\|TCCAG
174	J49	Landrace	N\|N
175	J52	Landrace	TCCAG\|TCCAG
176	J53	Landrace	TCCAG\|TCCAG
177	J54	Landrace	TCCAG\|TCCAG
178	J57	Landrace	TCCAG\|TCCAG
179	J59	Landrace	TCCAG\|TCCAG
180	J64	Landrace	TCCAG\|TCCAG
181	J66	Landrace	TCCAG\|TCCAG
182	J67	Landrace	TCCAG\|TCCAG
183	J69	Landrace	TCCAG\|TCCAG
184	J87	Landrace	TCCAG\|TCCAG
185	J99	Landrace	TCCAG\|TCCAG
186	s45	Landrace	TCCAG\|TCCAG
187	s11	Improved	TCCAG\|TCCAG
188	s10	Improved	TCCAG\|TCCAG
189	s46	Improved	TCCAG\|TCCAG
190	s12	Improved	TCCAG\|TCCAG
191	s13	Landrace	TCCAG\|TCCAG
192	MHMD	Landrace	TCCAG\|TCCAG
193	s14	Improved	TCCAG\|TCCAG
194	s15	Improved	TCCAG\|TCCAG
195	s34	Weedy	TCCAG\|TCCAG
196	s33	Wild sorghum	TCCAG\|TCCAG
197	s21	Wild sorghum	TCCAG\|TCCAG
198	s16	Wild sorghum	TCCAG\|TCCAG
199	s44	Improved	TCCAG\|TCCAG
200	s35	Landrace	TCCAG\|TCCAG
201	s31	Wild sorghum	TCCAG\|TCCAG
202	s17	Improved	TCCAG\|TCCAG
203	s18	Improved	TCCAG\|TCCAG
204	s20	Improved	TCCAG\|TCCAG
205	s19	Improved	TCCAG\|TCCAG
206	s22	Landrace	TCCAG\|TCCAG
207	s23	Landrace	TCCAG\|TCCAG
208	s24	Landrace	TCCAG\|TCCAG
209	s25	Landrace	TCCAG\|TCCAG
210	s26	Landrace	TCCAG\|TCCAG
211	s27	Landrace	TCCAG\|TCCAG
212	s28	Landrace	TCCAG\|TCCAG
213	s29	Landrace	TCCAG\|TCCAG
214	s30	Landrace	TCCAG\|TCCAG
215	SL25	Wild sorghum	TCCAG\|TCCAG
216	SL105	Wild sorghum	TCCAG\|TCCAG
217	SL108	Wild sorghum	TCCAG\|TCCAG
218	SL109	Wild sorghum	TCCAG\|TCCAG
219	SL12	Wild sorghum	TCCAG\|TCCAG
220	SL129	Wild sorghum	TCCAG\|TCCAG
221	SL130	Wild sorghum	TCCAG\|TCCAG
222	SL135	Wild sorghum	TCCAG\|TCCAG
223	SL136	Wild sorghum	TCCAG\|TCCAG
224	SL137	Wild sorghum	TCCAG\|TCCAG
225	SL138	Wild sorghum	TCCAG\|TCCAG
226	SL140	Wild sorghum	TCCAG\|TCCAG
227	SL141	Wild sorghum	TCCAG\|TCCAG
228	SL19	Wild sorghum	TCCAG\|TCCAG
229	SL28	Wild sorghum	TCCAG\|TCCAG
230	SL32	Wild sorghum	TCCAG\|TCCAG
231	SL35	Wild sorghum	TCCAG\|TCCAG
232	SL36	Wild sorghum	TCCAG\|TCCAG
233	SL37	Wild sorghum	TCCAG\|TCCAG
234	SL39	Wild sorghum	TCCAG\|TCCAG
235	SL41	Wild sorghum	TCCAG\|TCCAG
236	SL43	Wild sorghum	TCCAG\|TCCAG
237	SL47	Wild sorghum	TCCAG\|TCCAG
238	SL49	Wild sorghum	TCCAG\|TCCAG
239	SL51	Wild sorghum	TCCAG\|TCCAG
240	SL53	Wild sorghum	TCCAG\|TCCAG
241	SL62	Wild sorghum	TCCAG\|TCCAG
242	SL83	Wild sorghum	TCCAG\|TCCAG
243	SL97	Landrace	TCCAG\|TCCAG
244	s48	Improved	TCCAG\|TCCAG
245	Tu13	Wild sorghum	TCCAG\|TCCAG
246	Tu14	Wild sorghum	TCCAG\|TCCAG
247	Tu30	Wild sorghum	TCCAG\|TCCAG
248	Tu5	Wild sorghum	TCCAG\|TCCAG
249	WSC5	Landrace	TCCAG\|TCCAG
250	WSC15	Landrace	TCCAG\|TCCAG
251	WSC19	Landrace	TCCAG\|TCCAG
252	WSC30	Landrace	TCCAG\|TCCAG
253	WSC52	Landrace	TCCAG\|TCCAG
254	WSC6	Landrace	N\|N
255	WSC61	Landrace	TCCAG\|TCCAG
256	WSC71	Improved	TCCAG\|TCCAG
257	WSC72	Landrace	TCCAG\|TCCAG
258	WSC79	Landrace	TCCAG\|TCCAG
259	WSC94	Landrace	TCCAG\|TCCAG
260	WSC99	Landrace	TCCAG\|TCCAG
261	WSC100	Landrace	TCCAG\|TCCAG
262	WSC104	Landrace	TCCAG\|TCCAG
263	WSC105	Landrace	TCCAG\|TCCAG
264	WSC12	Landrace	TCCAG\|TCCAG
265	WSC13	Landrace	TCCAG\|TCCAG
266	WSC16	Landrace	TCCAG\|TCCAG
267	WSC17	Landrace	TCCAG\|TCCAG
268	WSC18	Landrace	TCCAG\|TCCAG
269	WSC20	Landrace	TCCAG\|TCCAG
270	WSC24	Landrace	TCCAG\|TCCAG
271	WSC25	Landrace	TCCAG\|TCCAG
272	WSC29	Landrace	TCCAG\|TCCAG
273	WSC31	Landrace	TCCAG\|TCCAG
274	WSC32	Landrace	TCCAG\|TCCAG
275	WSC34	Landrace	TCCAG\|TCCAG
276	WSC38	Landrace	TCCAG\|TCCAG
277	WSC39	Improved	TCCAG\|TCCAG
278	WSC40	Landrace	TCCAG\|TCCAG
279	WSC54	Landrace	TCCAG\|TCCAG
280	WSC56	Landrace	TCCAG\|TCCAG
281	WSC59	Landrace	TCCAG\|TCCAG
282	WSC68	Landrace	TCCAG\|TCCAG
283	WSC70	Landrace	TCCAG\|TCCAG
284	WSC73	Landrace	TCCAG\|TCCAG
285	WSC81	Landrace	TCCAG\|TCCAG
286	WSC85	Improved	TCCAG\|TCCAG
287	WSC91	Landrace	TCCAG\|TCCAG
288	WSC93	Landrace	TCCAG\|TCCAG
289	WSC98	Landrace	TCCAG\|TCCAG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825310	Sobic.001G000100	downstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

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