sorgsd

Variation ID : sbi33825315

Variation Detail

Variation ID	sbi33825315
Type	INDEL
Position	Chr01 6116-6119
Ref /Alleles	AAAG/ A
MAF	A: 0.002
5' Flank	AAGAGTTTTGAAGTGAGGAATGAGAGTGCA
3' Flank	AAGGAGAGAAAAACAATTCGAGTGCCTTCC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	AAAG\|AAAG
2	103	Improved	AAAG\|AAAG
3	107	Improved	AAAG\|AAAG
4	11	Improved	AAAG\|AAAG
5	110	Improved	AAAG\|AAAG
6	123	Landrace	AAAG\|AAAG
7	131	Improved	AAAG\|AAAG
8	132	Improved	AAAG\|AAAG
9	135	Improved	AAAG\|AAAG
10	137	Improved	AAAG\|AAAG
11	138	Improved	AAAG\|AAAG
12	14	Improved	AAAG\|AAAG
13	140	Improved	AAAG\|AAAG
14	141	Improved	AAAG\|AAAG
15	144	Improved	AAAG\|AAAG
16	150	Improved	AAAG\|AAAG
17	154	Improved	AAAG\|AAAG
18	159	Landrace	AAAG\|AAAG
19	16	Improved	AAAG\|AAAG
20	161	Landrace	AAAG\|AAAG
21	167	Improved	AAAG\|AAAG
22	168	Improved	AAAG\|AAAG
23	170	Improved	AAAG\|AAAG
24	173	Improved	AAAG\|AAAG
25	175	Improved	AAAG\|AAAG
26	176	Improved	AAAG\|AAAG
27	182	Landrace	AAAG\|AAAG
28	186	Improved	AAAG\|AAAG
29	190	Improved	AAAG\|AAAG
30	192	Improved	AAAG\|AAAG
31	194	Improved	AAAG\|AAAG
32	195	Improved	AAAG\|AAAG
33	197	Improved	AAAG\|AAAG
34	J22	Landrace	AAAG\|AAAG
35	J26	Landrace	AAAG\|AAAG
36	J5	Landrace	AAAG\|AAAG
37	J50	Landrace	AAAG\|AAAG
38	2001	Landrace	AAAG\|AAAG
39	2005	Improved	AAAG\|AAAG
40	2008	Improved	AAAG\|AAAG
41	2009	Landrace	AAAG\|AAAG
42	201	Improved	AAAG\|AAAG
43	2010	Landrace	AAAG\|AAAG
44	2016	Improved	AAAG\|AAAG
45	2019	Improved	AAAG\|AAAG
46	202	Improved	AAAG\|AAAG
47	2021	Improved	AAAG\|AAAG
48	2023	Improved	AAAG\|AAAG
49	2026	Improved	AAAG\|AAAG
50	2029	Improved	AAAG\|AAAG
51	2030	Landrace	AAAG\|AAAG
52	2031	Landrace	AAAG\|AAAG
53	2036	Improved	AAAG\|AAAG
54	2037	Improved	AAAG\|AAAG
55	2038	Improved	AAAG\|AAAG
56	2039	Improved	AAAG\|AAAG
57	204	Improved	AAAG\|AAAG
58	2042	Improved	AAAG\|AAAG
59	2043	Improved	AAAG\|AAAG
60	2048	Improved	AAAG\|AAAG
61	2049	Improved	AAAG\|AAAG
62	205	Improved	AAAG\|AAAG
63	2050	Improved	AAAG\|AAAG
64	2052	Improved	AAAG\|AAAG
65	2054	Improved	AAAG\|AAAG
66	2056	Improved	AAAG\|AAAG
67	2059	Improved	AAAG\|AAAG
68	206	Improved	AAAG\|AAAG
69	2064	Improved	AAAG\|AAAG
70	2065	Improved	AAAG\|AAAG
71	2067	Improved	AAAG\|AAAG
72	2068	Improved	AAAG\|AAAG
73	2069	Improved	AAAG\|AAAG
74	2071	Improved	AAAG\|AAAG
75	2074	Improved	AAAG\|AAAG
76	2075	Improved	AAAG\|AAAG
77	2076	Improved	AAAG\|AAAG
78	2080	Improved	AAAG\|AAAG
79	2081	Improved	AAAG\|AAAG
80	2082	Improved	AAAG\|AAAG
81	2086	Improved	AAAG\|AAAG
82	2088	Improved	AAAG\|AAAG
83	260	Wild sorghum	AAAG\|AAAG
84	261	Improved	AAAG\|AAAG
85	262	Improved	AAAG\|AAAG
86	263	Improved	AAAG\|AAAG
87	286	Improved	AAAG\|AAAG
88	29	Improved	AAAG\|AAAG
89	3	Improved	AAAG\|AAAG
90	302546	S.propinquum	AAAG\|AAAG
91	31	Improved	AAAG\|AAAG
92	32	Improved	AAAG\|AAAG
93	34	Improved	AAAG\|AAAG
94	346	Landrace	AAAG\|AAAG
95	348	Wild sorghum	AAAG\|AAAG
96	353	Wild sorghum	AAAG\|AAAG
97	355	Wild sorghum	AAAG\|AAAG
98	357	Wild sorghum	AAAG\|AAAG
99	364	Wild sorghum	AAAG\|AAAG
100	367	Landrace	AAAG\|AAAG
101	s37	S.propinquum	AAAG\|AAAG
102	s38	S.propinquum	AAAG\|AAAG
103	370	Landrace	AAAG\|AAAG
104	377	Wild sorghum	AAAG\|AAAG
105	392	Wild sorghum	AAAG\|AAAG
106	394	Wild sorghum	AAAG\|AAAG
107	40	Improved	AAAG\|AAAG
108	42	Improved	AAAG\|AAAG
109	43	Improved	AAAG\|AAAG
110	45	Improved	AAAG\|AAAG
111	47	Improved	AAAG\|AAAG
112	48	Improved	AAAG\|AAAG
113	51	Improved	AAAG\|AAAG
114	53	Improved	AAAG\|AAAG
115	56	Improved	AAAG\|AAAG
116	61	Improved	AAAG\|AAAG
117	62	Improved	AAAG\|AAAG
118	66	Landrace	AAAG\|AAAG
119	67	Improved	AAAG\|AAAG
120	68	Improved	AAAG\|AAAG
121	70	Improved	AAAG\|AAAG
122	73	Improved	AAAG\|AAAG
123	75	Improved	AAAG\|AAAG
124	88	Improved	AAAG\|AAAG
125	89	Improved	AAAG\|AAAG
126	91	Improved	AAAG\|AAAG
127	92	Improved	AAAG\|AAAG
128	93	Improved	AAAG\|AAAG
129	94	Improved	AAAG\|AAAG
130	95	Improved	AAAG\|AAAG
131	96	Improved	AAAG\|AAAG
132	97	Improved	AAAG\|AAAG
133	s1	Improved	AAAG\|AAAG
134	s36	Wild sorghum	AAAG\|AAAG
135	s2	Landrace	AAAG\|AAAG
136	s3	Improved	AAAG\|AAAG
137	s32	Improved	AAAG\|AAAG
138	s43	Weedy	AAAG\|AAAG
139	s40	Landrace	AAAG\|AAAG
140	s41	Weedy	AAAG\|AAAG
141	s39	Landrace	AAAG\|AAAG
142	s42	Landrace	AAAG\|AAAG
143	s47	Improved	AAAG\|AAAG
144	s5	Landrace	AAAG\|AAAG
145	GW102	Landrace	AAAG\|AAAG
146	GW103	Landrace	AAAG\|AAAG
147	GW104	Landrace	AAAG\|AAAG
148	GW105	Landrace	AAAG\|AAAG
149	GW16	Landrace	AAAG\|AAAG
150	GW2	Landrace	AAAG\|AAAG
151	GW34	Landrace	AAAG\|AAAG
152	GW37	Landrace	AAAG\|AAAG
153	GW58	Landrace	AAAG\|AAAG
154	GW59	Landrace	AAAG\|AAAG
155	GW9	Landrace	AAAG\|AAAG
156	s4	Weedy	AAAG\|AAAG
157	s6	Improved	AAAG\|AAAG
158	s7	Landrace	AAAG\|AAAG
159	s8	Landrace	AAAG\|AAAG
160	s9	Landrace	AAAG\|AAAG
161	J101	Landrace	AAAG\|AAAG
162	J103	Improved	AAAG\|AAAG
163	J112	Landrace	AAAG\|AAAG
164	J113	Improved	AAAG\|AAAG
165	J129	Improved	AAAG\|AAAG
166	J130	Improved	AAAG\|AAAG
167	J136	Improved	AAAG\|AAAG
168	J152	Improved	AAAG\|AAAG
169	J2	Landrace	AAAG\|AAAG
170	J20	Landrace	AAAG\|AAAG
171	J4	Landrace	AAAG\|AAAG
172	J42	Landrace	AAAG\|AAAG
173	J44	Landrace	AAAG\|AAAG
174	J49	Landrace	AAAG\|AAAG
175	J52	Landrace	AAAG\|AAAG
176	J53	Landrace	AAAG\|AAAG
177	J54	Landrace	AAAG\|AAAG
178	J57	Landrace	N\|N
179	J59	Landrace	AAAG\|AAAG
180	J64	Landrace	AAAG\|AAAG
181	J66	Landrace	AAAG\|AAAG
182	J67	Landrace	AAAG\|AAAG
183	J69	Landrace	AAAG\|AAAG
184	J87	Landrace	AAAG\|AAAG
185	J99	Landrace	AAAG\|AAAG
186	s45	Landrace	AAAG\|AAAG
187	s11	Improved	AAAG\|AAAG
188	s10	Improved	AAAG\|AAAG
189	s46	Improved	AAAG\|AAAG
190	s12	Improved	AAAG\|AAAG
191	s13	Landrace	AAAG\|AAAG
192	MHMD	Landrace	AAAG\|AAAG
193	s14	Improved	AAAG\|AAAG
194	s15	Improved	AAAG\|AAAG
195	s34	Weedy	AAAG\|AAAG
196	s33	Wild sorghum	AAAG\|AAAG
197	s21	Wild sorghum	AAAG\|AAAG
198	s16	Wild sorghum	AAAG\|AAAG
199	s44	Improved	AAAG\|AAAG
200	s35	Landrace	AAAG\|AAAG
201	s31	Wild sorghum	AAAG\|AAAG
202	s17	Improved	AAAG\|AAAG
203	s18	Improved	AAAG\|AAAG
204	s20	Improved	AAAG\|AAAG
205	s19	Improved	AAAG\|AAAG
206	s22	Landrace	AAAG\|AAAG
207	s23	Landrace	AAAG\|AAAG
208	s24	Landrace	AAAG\|AAAG
209	s25	Landrace	AAAG\|AAAG
210	s26	Landrace	AAAG\|AAAG
211	s27	Landrace	AAAG\|AAAG
212	s28	Landrace	AAAG\|AAAG
213	s29	Landrace	AAAG\|AAAG
214	s30	Landrace	AAAG\|AAAG
215	SL25	Wild sorghum	AAAG\|AAAG
216	SL105	Wild sorghum	AAAG\|AAAG
217	SL108	Wild sorghum	AAAG\|AAAG
218	SL109	Wild sorghum	AAAG\|AAAG
219	SL12	Wild sorghum	AAAG\|AAAG
220	SL129	Wild sorghum	AAAG\|AAAG
221	SL130	Wild sorghum	AAAG\|AAAG
222	SL135	Wild sorghum	AAAG\|AAAG
223	SL136	Wild sorghum	AAAG\|AAAG
224	SL137	Wild sorghum	AAAG\|AAAG
225	SL138	Wild sorghum	AAAG\|AAAG
226	SL140	Wild sorghum	AAAG\|AAAG
227	SL141	Wild sorghum	AAAG\|AAAG
228	SL19	Wild sorghum	AAAG\|AAAG
229	SL28	Wild sorghum	AAAG\|AAAG
230	SL32	Wild sorghum	AAAG\|AAAG
231	SL35	Wild sorghum	AAAG\|AAAG
232	SL36	Wild sorghum	AAAG\|AAAG
233	SL37	Wild sorghum	AAAG\|AAAG
234	SL39	Wild sorghum	AAAG\|AAAG
235	SL41	Wild sorghum	AAAG\|AAAG
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	AAAG\|AAAG
238	SL49	Wild sorghum	AAAG\|AAAG
239	SL51	Wild sorghum	AAAG\|AAAG
240	SL53	Wild sorghum	AAAG\|AAAG
241	SL62	Wild sorghum	AAAG\|AAAG
242	SL83	Wild sorghum	AAAG\|AAAG
243	SL97	Landrace	AAAG\|A
244	s48	Improved	AAAG\|AAAG
245	Tu13	Wild sorghum	AAAG\|AAAG
246	Tu14	Wild sorghum	AAAG\|AAAG
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	AAAG\|AAAG
249	WSC5	Landrace	AAAG\|AAAG
250	WSC15	Landrace	AAAG\|AAAG
251	WSC19	Landrace	AAAG\|AAAG
252	WSC30	Landrace	AAAG\|AAAG
253	WSC52	Landrace	AAAG\|AAAG
254	WSC6	Landrace	AAAG\|AAAG
255	WSC61	Landrace	AAAG\|AAAG
256	WSC71	Improved	AAAG\|AAAG
257	WSC72	Landrace	AAAG\|AAAG
258	WSC79	Landrace	AAAG\|AAAG
259	WSC94	Landrace	AAAG\|AAAG
260	WSC99	Landrace	AAAG\|AAAG
261	WSC100	Landrace	AAAG\|AAAG
262	WSC104	Landrace	AAAG\|AAAG
263	WSC105	Landrace	AAAG\|AAAG
264	WSC12	Landrace	AAAG\|AAAG
265	WSC13	Landrace	AAAG\|AAAG
266	WSC16	Landrace	AAAG\|AAAG
267	WSC17	Landrace	AAAG\|AAAG
268	WSC18	Landrace	AAAG\|AAAG
269	WSC20	Landrace	AAAG\|AAAG
270	WSC24	Landrace	AAAG\|AAAG
271	WSC25	Landrace	AAAG\|AAAG
272	WSC29	Landrace	AAAG\|AAAG
273	WSC31	Landrace	AAAG\|AAAG
274	WSC32	Landrace	AAAG\|AAAG
275	WSC34	Landrace	AAAG\|AAAG
276	WSC38	Landrace	AAAG\|AAAG
277	WSC39	Improved	AAAG\|AAAG
278	WSC40	Landrace	AAAG\|AAAG
279	WSC54	Landrace	AAAG\|AAAG
280	WSC56	Landrace	AAAG\|AAAG
281	WSC59	Landrace	AAAG\|AAAG
282	WSC68	Landrace	AAAG\|AAAG
283	WSC70	Landrace	AAAG\|AAAG
284	WSC73	Landrace	AAAG\|AAAG
285	WSC81	Landrace	AAAG\|AAAG
286	WSC85	Improved	AAAG\|AAAG
287	WSC91	Landrace	AAAG\|AAAG
288	WSC93	Landrace	AAAG\|AAAG
289	WSC98	Landrace	AAAG\|AAAG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825315	Sobic.001G000100	downstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

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