sorgsd

Variation ID : sbi33825354

Variation Detail

Variation ID	sbi33825354
Type	INDEL
Position	Chr01 10205-10217
Ref /Alleles	GATAGTGGAACCT/ G
MAF	G: 0.036
5' Flank	TGATACCGTTTTTTGACACGTATCCGGACA
3' Flank	GGATCGGCAGGTGGAAAAGTAATGGTTGAT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
2	103	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
3	107	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
4	11	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
5	110	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
6	123	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
7	131	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
8	132	Improved	G\|G
9	135	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
10	137	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
11	138	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
12	14	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
13	140	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
14	141	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
15	144	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
16	150	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
17	154	Improved	G\|G
18	159	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
19	16	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
20	161	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
21	167	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
22	168	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
23	170	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
24	173	Improved	G\|G
25	175	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
26	176	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
27	182	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
28	186	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
29	190	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
30	192	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
31	194	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
32	195	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
33	197	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
34	J22	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
35	J26	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
36	J5	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
37	J50	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
38	2001	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
39	2005	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
40	2008	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
41	2009	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
42	201	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
43	2010	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
44	2016	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
45	2019	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
46	202	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
47	2021	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
48	2023	Improved	N\|N
49	2026	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
50	2029	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
51	2030	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
52	2031	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
53	2036	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
54	2037	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
55	2038	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
56	2039	Improved	N\|N
57	204	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
58	2042	Improved	N\|N
59	2043	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
60	2048	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
61	2049	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
62	205	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
63	2050	Improved	G\|G
64	2052	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
65	2054	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
66	2056	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
67	2059	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
68	206	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
69	2064	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
70	2065	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
71	2067	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
72	2068	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
73	2069	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
74	2071	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
75	2074	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
76	2075	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
77	2076	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
78	2080	Improved	N\|N
79	2081	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
80	2082	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
81	2086	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
82	2088	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
83	260	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
84	261	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
85	262	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
86	263	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
87	286	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
88	29	Improved	G\|G
89	3	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
90	302546	S.propinquum	GATAGTGGAACCT\|GATAGTGGAACCT
91	31	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
92	32	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
93	34	Improved	G\|G
94	346	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
95	348	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
96	353	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
97	355	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
98	357	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
99	364	Wild sorghum	N\|N
100	367	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
101	s37	S.propinquum	GATAGTGGAACCT\|GATAGTGGAACCT
102	s38	S.propinquum	GATAGTGGAACCT\|GATAGTGGAACCT
103	370	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
104	377	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
105	392	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
106	394	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
107	40	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
108	42	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
109	43	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
110	45	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
111	47	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
112	48	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
113	51	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
114	53	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
115	56	Improved	N\|N
116	61	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
117	62	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
118	66	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
119	67	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
120	68	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
121	70	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
122	73	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
123	75	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
124	88	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
125	89	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
126	91	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
127	92	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
128	93	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
129	94	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
130	95	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
131	96	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
132	97	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
133	s1	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
134	s36	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
135	s2	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
136	s3	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
137	s32	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
138	s43	Weedy	GATAGTGGAACCT\|GATAGTGGAACCT
139	s40	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
140	s41	Weedy	GATAGTGGAACCT\|GATAGTGGAACCT
141	s39	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
142	s42	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
143	s47	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
144	s5	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
145	GW102	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
146	GW103	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
147	GW104	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
148	GW105	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
149	GW16	Landrace	N\|N
150	GW2	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
151	GW34	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
152	GW37	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
153	GW58	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
154	GW59	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
155	GW9	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
156	s4	Weedy	GATAGTGGAACCT\|GATAGTGGAACCT
157	s6	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
158	s7	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
159	s8	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
160	s9	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
161	J101	Landrace	G\|G
162	J103	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
163	J112	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
164	J113	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
165	J129	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
166	J130	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
167	J136	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
168	J152	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
169	J2	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
170	J20	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
171	J4	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
172	J42	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
173	J44	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
174	J49	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
175	J52	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
176	J53	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
177	J54	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
178	J57	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
179	J59	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
180	J64	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
181	J66	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
182	J67	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
183	J69	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
184	J87	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
185	J99	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
186	s45	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
187	s11	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
188	s10	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
189	s46	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
190	s12	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
191	s13	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
192	MHMD	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
193	s14	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
194	s15	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
195	s34	Weedy	GATAGTGGAACCT\|GATAGTGGAACCT
196	s33	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
197	s21	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
198	s16	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
199	s44	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
200	s35	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
201	s31	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
202	s17	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
203	s18	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
204	s20	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
205	s19	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
206	s22	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
207	s23	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
208	s24	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
209	s25	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
210	s26	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
211	s27	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
212	s28	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
213	s29	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
214	s30	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
215	SL25	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
216	SL105	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
217	SL108	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
218	SL109	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
219	SL12	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
220	SL129	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
221	SL130	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
222	SL135	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
223	SL136	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
224	SL137	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
225	SL138	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
226	SL140	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
227	SL141	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
228	SL19	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
229	SL28	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
230	SL32	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
231	SL35	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
232	SL36	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
233	SL37	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
234	SL39	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
235	SL41	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
236	SL43	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
237	SL47	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
238	SL49	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
239	SL51	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
240	SL53	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
241	SL62	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
242	SL83	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
243	SL97	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
244	s48	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	GATAGTGGAACCT\|GATAGTGGAACCT
249	WSC5	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
252	WSC30	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
253	WSC52	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
254	WSC6	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
255	WSC61	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
256	WSC71	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
257	WSC72	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
258	WSC79	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
259	WSC94	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
260	WSC99	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
261	WSC100	Landrace	G\|G
262	WSC104	Landrace	G\|G
263	WSC105	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
264	WSC12	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
265	WSC13	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
266	WSC16	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
267	WSC17	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
268	WSC18	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
269	WSC20	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
270	WSC24	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
271	WSC25	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
272	WSC29	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
273	WSC31	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
274	WSC32	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
275	WSC34	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
276	WSC38	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
277	WSC39	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
278	WSC40	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
279	WSC54	Landrace	G\|G
280	WSC56	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
281	WSC59	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
282	WSC68	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
283	WSC70	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
284	WSC73	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
285	WSC81	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
286	WSC85	Improved	GATAGTGGAACCT\|GATAGTGGAACCT
287	WSC91	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
288	WSC93	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT
289	WSC98	Landrace	GATAGTGGAACCT\|GATAGTGGAACCT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825354	Sobic.001G000200	downstream gene variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

Genome Browser