Variation ID : sbi33825357

Variation Detail



Variation ID sbi33825357
Type INDEL
Position Chr01 10252-10256
Ref /Alleles AGAAG/ A
MAF A: 0.053
5' Flank CGGCAGGTGGAAAAGTAATGGTTGATTGTC
3' Flank AGTTACCGATGGGTTAAGATGCCGATGATA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved AGAAG|AGAAG
2 103 Improved AGAAG|AGAAG
3 107 Improved AGAAG|AGAAG
4 11 Improved AGAAG|AGAAG
5 110 Improved AGAAG|AGAAG
6 123 Landrace AGAAG|AGAAG
7 131 Improved AGAAG|AGAAG
8 132 Improved A|A
9 135 Improved AGAAG|AGAAG
10 137 Improved AGAAG|AGAAG
11 138 Improved AGAAG|AGAAG
12 14 Improved AGAAG|AGAAG
13 140 Improved AGAAG|AGAAG
14 141 Improved AGAAG|AGAAG
15 144 Improved AGAAG|AGAAG
16 150 Improved AGAAG|AGAAG
17 154 Improved A|A
18 159 Landrace AGAAG|AGAAG
19 16 Improved AGAAG|AGAAG
20 161 Landrace AGAAG|AGAAG
21 167 Improved AGAAG|AGAAG
22 168 Improved AGAAG|AGAAG
23 170 Improved AGAAG|AGAAG
24 173 Improved A|A
25 175 Improved AGAAG|AGAAG
26 176 Improved AGAAG|AGAAG
27 182 Landrace N|N
28 186 Improved AGAAG|AGAAG
29 190 Improved AGAAG|AGAAG
30 192 Improved AGAAG|AGAAG
31 194 Improved N|N
32 195 Improved N|N
33 197 Improved AGAAG|AGAAG
34 J22 Landrace AGAAG|AGAAG
35 J26 Landrace AGAAG|AGAAG
36 J5 Landrace AGAAG|AGAAG
37 J50 Landrace AGAAG|AGAAG
38 2001 Landrace N|N
39 2005 Improved N|N
40 2008 Improved AGAAG|AGAAG
41 2009 Landrace AGAAG|AGAAG
42 201 Improved AGAAG|AGAAG
43 2010 Landrace AGAAG|AGAAG
44 2016 Improved N|N
45 2019 Improved AGAAG|AGAAG
46 202 Improved AGAAG|AGAAG
47 2021 Improved N|N
48 2023 Improved N|N
49 2026 Improved AGAAG|AGAAG
50 2029 Improved AGAAG|AGAAG
51 2030 Landrace AGAAG|AGAAG
52 2031 Landrace AGAAG|AGAAG
53 2036 Improved AGAAG|AGAAG
54 2037 Improved AGAAG|AGAAG
55 2038 Improved AGAAG|AGAAG
56 2039 Improved N|N
57 204 Improved AGAAG|AGAAG
58 2042 Improved AGAAG|AGAAG
59 2043 Improved AGAAG|AGAAG
60 2048 Improved AGAAG|AGAAG
61 2049 Improved AGAAG|AGAAG
62 205 Improved AGAAG|AGAAG
63 2050 Improved A|A
64 2052 Improved AGAAG|AGAAG
65 2054 Improved AGAAG|AGAAG
66 2056 Improved AGAAG|AGAAG
67 2059 Improved AGAAG|AGAAG
68 206 Improved AGAAG|AGAAG
69 2064 Improved N|N
70 2065 Improved AGAAG|AGAAG
71 2067 Improved N|N
72 2068 Improved AGAAG|AGAAG
73 2069 Improved N|N
74 2071 Improved AGAAG|AGAAG
75 2074 Improved AGAAG|AGAAG
76 2075 Improved AGAAG|AGAAG
77 2076 Improved AGAAG|AGAAG
78 2080 Improved N|N
79 2081 Improved AGAAG|AGAAG
80 2082 Improved AGAAG|AGAAG
81 2086 Improved N|N
82 2088 Improved AGAAG|AGAAG
83 260 Wild sorghum AGAAG|AGAAG
84 261 Improved AGAAG|AGAAG
85 262 Improved AGAAG|AGAAG
86 263 Improved AGAAG|AGAAG
87 286 Improved AGAAG|AGAAG
88 29 Improved A|A
89 3 Improved N|N
90 302546 S.propinquum AGAAG|AGAAG
91 31 Improved AGAAG|AGAAG
92 32 Improved AGAAG|AGAAG
93 34 Improved A|A
94 346 Landrace AGAAG|AGAAG
95 348 Wild sorghum AGAAG|AGAAG
96 353 Wild sorghum AGAAG|AGAAG
97 355 Wild sorghum AGAAG|AGAAG
98 357 Wild sorghum AGAAG|AGAAG
99 364 Wild sorghum A|A
100 367 Landrace AGAAG|AGAAG
101 s37 S.propinquum AGAAG|AGAAG
102 s38 S.propinquum AGAAG|AGAAG
103 370 Landrace AGAAG|AGAAG
104 377 Wild sorghum AGAAG|AGAAG
105 392 Wild sorghum AGAAG|AGAAG
106 394 Wild sorghum AGAAG|AGAAG
107 40 Improved AGAAG|AGAAG
108 42 Improved AGAAG|AGAAG
109 43 Improved AGAAG|A
110 45 Improved AGAAG|AGAAG
111 47 Improved AGAAG|AGAAG
112 48 Improved AGAAG|AGAAG
113 51 Improved AGAAG|AGAAG
114 53 Improved AGAAG|AGAAG
115 56 Improved AGAAG|AGAAG
116 61 Improved AGAAG|AGAAG
117 62 Improved AGAAG|AGAAG
118 66 Landrace AGAAG|AGAAG
119 67 Improved AGAAG|AGAAG
120 68 Improved AGAAG|AGAAG
121 70 Improved N|N
122 73 Improved AGAAG|AGAAG
123 75 Improved AGAAG|AGAAG
124 88 Improved AGAAG|AGAAG
125 89 Improved AGAAG|AGAAG
126 91 Improved AGAAG|AGAAG
127 92 Improved AGAAG|AGAAG
128 93 Improved AGAAG|AGAAG
129 94 Improved AGAAG|AGAAG
130 95 Improved AGAAG|AGAAG
131 96 Improved AGAAG|AGAAG
132 97 Improved AGAAG|AGAAG
133 s1 Improved AGAAG|AGAAG
134 s36 Wild sorghum A|A
135 s2 Landrace AGAAG|AGAAG
136 s3 Improved AGAAG|AGAAG
137 s32 Improved AGAAG|AGAAG
138 s43 Weedy AGAAG|AGAAG
139 s40 Landrace AGAAG|AGAAG
140 s41 Weedy AGAAG|AGAAG
141 s39 Landrace AGAAG|AGAAG
142 s42 Landrace AGAAG|AGAAG
143 s47 Improved AGAAG|AGAAG
144 s5 Landrace AGAAG|AGAAG
145 GW102 Landrace AGAAG|AGAAG
146 GW103 Landrace AGAAG|AGAAG
147 GW104 Landrace AGAAG|AGAAG
148 GW105 Landrace AGAAG|AGAAG
149 GW16 Landrace N|N
150 GW2 Landrace AGAAG|AGAAG
151 GW34 Landrace AGAAG|AGAAG
152 GW37 Landrace AGAAG|AGAAG
153 GW58 Landrace AGAAG|AGAAG
154 GW59 Landrace AGAAG|AGAAG
155 GW9 Landrace AGAAG|AGAAG
156 s4 Weedy AGAAG|AGAAG
157 s6 Improved AGAAG|AGAAG
158 s7 Landrace AGAAG|AGAAG
159 s8 Landrace AGAAG|AGAAG
160 s9 Landrace AGAAG|AGAAG
161 J101 Landrace A|A
162 J103 Improved AGAAG|AGAAG
163 J112 Landrace AGAAG|AGAAG
164 J113 Improved AGAAG|AGAAG
165 J129 Improved AGAAG|AGAAG
166 J130 Improved AGAAG|AGAAG
167 J136 Improved AGAAG|AGAAG
168 J152 Improved AGAAG|AGAAG
169 J2 Landrace AGAAG|AGAAG
170 J20 Landrace N|N
171 J4 Landrace AGAAG|AGAAG
172 J42 Landrace AGAAG|AGAAG
173 J44 Landrace AGAAG|AGAAG
174 J49 Landrace AGAAG|AGAAG
175 J52 Landrace AGAAG|AGAAG
176 J53 Landrace N|N
177 J54 Landrace AGAAG|AGAAG
178 J57 Landrace AGAAG|AGAAG
179 J59 Landrace AGAAG|AGAAG
180 J64 Landrace AGAAG|AGAAG
181 J66 Landrace AGAAG|AGAAG
182 J67 Landrace AGAAG|AGAAG
183 J69 Landrace AGAAG|AGAAG
184 J87 Landrace N|N
185 J99 Landrace AGAAG|AGAAG
186 s45 Landrace AGAAG|AGAAG
187 s11 Improved AGAAG|AGAAG
188 s10 Improved AGAAG|AGAAG
189 s46 Improved AGAAG|AGAAG
190 s12 Improved AGAAG|AGAAG
191 s13 Landrace AGAAG|AGAAG
192 MHMD Landrace AGAAG|AGAAG
193 s14 Improved AGAAG|AGAAG
194 s15 Improved AGAAG|AGAAG
195 s34 Weedy AGAAG|AGAAG
196 s33 Wild sorghum A|A
197 s21 Wild sorghum AGAAG|AGAAG
198 s16 Wild sorghum AGAAG|AGAAG
199 s44 Improved AGAAG|AGAAG
200 s35 Landrace AGAAG|AGAAG
201 s31 Wild sorghum AGAAG|AGAAG
202 s17 Improved AGAAG|AGAAG
203 s18 Improved AGAAG|AGAAG
204 s20 Improved AGAAG|AGAAG
205 s19 Improved AGAAG|AGAAG
206 s22 Landrace AGAAG|AGAAG
207 s23 Landrace AGAAG|AGAAG
208 s24 Landrace AGAAG|AGAAG
209 s25 Landrace AGAAG|AGAAG
210 s26 Landrace AGAAG|AGAAG
211 s27 Landrace AGAAG|AGAAG
212 s28 Landrace AGAAG|AGAAG
213 s29 Landrace AGAAG|AGAAG
214 s30 Landrace AGAAG|AGAAG
215 SL25 Wild sorghum AGAAG|AGAAG
216 SL105 Wild sorghum AGAAG|AGAAG
217 SL108 Wild sorghum AGAAG|AGAAG
218 SL109 Wild sorghum AGAAG|AGAAG
219 SL12 Wild sorghum AGAAG|AGAAG
220 SL129 Wild sorghum AGAAG|AGAAG
221 SL130 Wild sorghum AGAAG|AGAAG
222 SL135 Wild sorghum AGAAG|A
223 SL136 Wild sorghum AGAAG|AGAAG
224 SL137 Wild sorghum AGAAG|AGAAG
225 SL138 Wild sorghum AGAAG|AGAAG
226 SL140 Wild sorghum AGAAG|AGAAG
227 SL141 Wild sorghum AGAAG|AGAAG
228 SL19 Wild sorghum AGAAG|AGAAG
229 SL28 Wild sorghum AGAAG|AGAAG
230 SL32 Wild sorghum AGAAG|AGAAG
231 SL35 Wild sorghum AGAAG|AGAAG
232 SL36 Wild sorghum AGAAG|AGAAG
233 SL37 Wild sorghum AGAAG|AGAAG
234 SL39 Wild sorghum AGAAG|AGAAG
235 SL41 Wild sorghum AGAAG|AGAAG
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum AGAAG|AGAAG
238 SL49 Wild sorghum AGAAG|AGAAG
239 SL51 Wild sorghum AGAAG|AGAAG
240 SL53 Wild sorghum AGAAG|AGAAG
241 SL62 Wild sorghum AGAAG|AGAAG
242 SL83 Wild sorghum AGAAG|AGAAG
243 SL97 Landrace AGAAG|AGAAG
244 s48 Improved AGAAG|AGAAG
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum A|A
248 Tu5 Wild sorghum AGAAG|AGAAG
249 WSC5 Landrace AGAAG|AGAAG
250 WSC15 Landrace N|N
251 WSC19 Landrace N|N
252 WSC30 Landrace AGAAG|AGAAG
253 WSC52 Landrace AGAAG|AGAAG
254 WSC6 Landrace AGAAG|AGAAG
255 WSC61 Landrace AGAAG|AGAAG
256 WSC71 Improved AGAAG|AGAAG
257 WSC72 Landrace AGAAG|AGAAG
258 WSC79 Landrace AGAAG|AGAAG
259 WSC94 Landrace AGAAG|AGAAG
260 WSC99 Landrace AGAAG|AGAAG
261 WSC100 Landrace A|A
262 WSC104 Landrace N|N
263 WSC105 Landrace AGAAG|AGAAG
264 WSC12 Landrace AGAAG|AGAAG
265 WSC13 Landrace AGAAG|AGAAG
266 WSC16 Landrace AGAAG|AGAAG
267 WSC17 Landrace AGAAG|AGAAG
268 WSC18 Landrace AGAAG|AGAAG
269 WSC20 Landrace AGAAG|AGAAG
270 WSC24 Landrace AGAAG|AGAAG
271 WSC25 Landrace AGAAG|AGAAG
272 WSC29 Landrace AGAAG|AGAAG
273 WSC31 Landrace AGAAG|AGAAG
274 WSC32 Landrace AGAAG|AGAAG
275 WSC34 Landrace AGAAG|AGAAG
276 WSC38 Landrace AGAAG|AGAAG
277 WSC39 Improved N|N
278 WSC40 Landrace AGAAG|AGAAG
279 WSC54 Landrace A|A
280 WSC56 Landrace AGAAG|AGAAG
281 WSC59 Landrace AGAAG|AGAAG
282 WSC68 Landrace AGAAG|AGAAG
283 WSC70 Landrace AGAAG|AGAAG
284 WSC73 Landrace AGAAG|AGAAG
285 WSC81 Landrace AGAAG|AGAAG
286 WSC85 Improved AGAAG|AGAAG
287 WSC91 Landrace AGAAG|AGAAG
288 WSC93 Landrace AGAAG|AGAAG
289 WSC98 Landrace AGAAG|AGAAG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825357 Sobic.001G000200 downstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser