sorgsd

Variation ID : sbi33825371

Variation Detail

Variation ID	sbi33825371
Type	INDEL
Position	Chr01 11282-11283
Ref /Alleles	CA/ C
MAF	C: 0.138
5' Flank	TTTATACAGATGATTTTCCAAATGATGATT
3' Flank	AAGTGTGAAATTTGAAAAGACTCTTAGACA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CA\|CA
2	103	Improved	CA\|CA
3	107	Improved	CA\|CA
4	11	Improved	CA\|CA
5	110	Improved	CA\|CA
6	123	Landrace	CA\|CA
7	131	Improved	CA\|CA
8	132	Improved	CA\|CA
9	135	Improved	CA\|CA
10	137	Improved	CA\|CA
11	138	Improved	CA\|CA
12	14	Improved	CA\|CA
13	140	Improved	CA\|CA
14	141	Improved	CA\|CA
15	144	Improved	CA\|CA
16	150	Improved	CA\|CA
17	154	Improved	CA\|CA
18	159	Landrace	CA\|CA
19	16	Improved	CA\|CA
20	161	Landrace	CA\|CA
21	167	Improved	CA\|CA
22	168	Improved	CA\|CA
23	170	Improved	CA\|CA
24	173	Improved	CA\|CA
25	175	Improved	CA\|CA
26	176	Improved	CA\|CA
27	182	Landrace	C\|C
28	186	Improved	CA\|CA
29	190	Improved	CA\|CA
30	192	Improved	CA\|CA
31	194	Improved	C\|C
32	195	Improved	C\|C
33	197	Improved	N\|N
34	J22	Landrace	C\|C
35	J26	Landrace	CA\|CA
36	J5	Landrace	C\|C
37	J50	Landrace	CA\|CA
38	2001	Landrace	C\|C
39	2005	Improved	C\|C
40	2008	Improved	CA\|CA
41	2009	Landrace	CA\|CA
42	201	Improved	CA\|CA
43	2010	Landrace	CA\|CA
44	2016	Improved	C\|C
45	2019	Improved	CA\|CA
46	202	Improved	CA\|CA
47	2021	Improved	C\|C
48	2023	Improved	C\|C
49	2026	Improved	CA\|CA
50	2029	Improved	CA\|CA
51	2030	Landrace	CA\|CA
52	2031	Landrace	CA\|CA
53	2036	Improved	CA\|CA
54	2037	Improved	CA\|CA
55	2038	Improved	CA\|CA
56	2039	Improved	CA\|C
57	204	Improved	CA\|CA
58	2042	Improved	CA\|CA
59	2043	Improved	CA\|CA
60	2048	Improved	CA\|CA
61	2049	Improved	CA\|CA
62	205	Improved	CA\|CA
63	2050	Improved	CA\|CA
64	2052	Improved	CA\|CA
65	2054	Improved	C\|C
66	2056	Improved	CA\|CA
67	2059	Improved	CA\|CA
68	206	Improved	CA\|CA
69	2064	Improved	C\|C
70	2065	Improved	CA\|CA
71	2067	Improved	C\|C
72	2068	Improved	C\|C
73	2069	Improved	C\|C
74	2071	Improved	CA\|CA
75	2074	Improved	C\|C
76	2075	Improved	CA\|CA
77	2076	Improved	CA\|CA
78	2080	Improved	C\|C
79	2081	Improved	CA\|CA
80	2082	Improved	C\|C
81	2086	Improved	C\|C
82	2088	Improved	CA\|CA
83	260	Wild sorghum	CA\|CA
84	261	Improved	CA\|CA
85	262	Improved	N\|N
86	263	Improved	CA\|CA
87	286	Improved	CA\|CA
88	29	Improved	CA\|CA
89	3	Improved	CA\|CA
90	302546	S.propinquum	CA\|CA
91	31	Improved	CA\|CA
92	32	Improved	CA\|CA
93	34	Improved	CA\|CA
94	346	Landrace	CA\|CA
95	348	Wild sorghum	CA\|CA
96	353	Wild sorghum	CA\|CA
97	355	Wild sorghum	CA\|CA
98	357	Wild sorghum	CA\|CA
99	364	Wild sorghum	CA\|CA
100	367	Landrace	CA\|CA
101	s37	S.propinquum	CA\|CA
102	s38	S.propinquum	CA\|CA
103	370	Landrace	CA\|CA
104	377	Wild sorghum	CA\|CA
105	392	Wild sorghum	CA\|CA
106	394	Wild sorghum	CA\|CA
107	40	Improved	CA\|CA
108	42	Improved	CA\|CA
109	43	Improved	CA\|CA
110	45	Improved	CA\|CA
111	47	Improved	CA\|CA
112	48	Improved	C\|C
113	51	Improved	CA\|CA
114	53	Improved	CA\|CA
115	56	Improved	CA\|CA
116	61	Improved	CA\|CA
117	62	Improved	CA\|CA
118	66	Landrace	CA\|CA
119	67	Improved	CA\|CA
120	68	Improved	CA\|CA
121	70	Improved	C\|C
122	73	Improved	CA\|CA
123	75	Improved	CA\|CA
124	88	Improved	CA\|CA
125	89	Improved	CA\|CA
126	91	Improved	CA\|CA
127	92	Improved	CA\|CA
128	93	Improved	CA\|CA
129	94	Improved	CA\|CA
130	95	Improved	CA\|CA
131	96	Improved	CA\|CA
132	97	Improved	CA\|CA
133	s1	Improved	CA\|CA
134	s36	Wild sorghum	CA\|CA
135	s2	Landrace	CA\|CA
136	s3	Improved	CA\|CA
137	s32	Improved	CA\|CA
138	s43	Weedy	CA\|CA
139	s40	Landrace	CA\|CA
140	s41	Weedy	CA\|CA
141	s39	Landrace	CA\|C
142	s42	Landrace	CA\|CA
143	s47	Improved	CA\|CA
144	s5	Landrace	CA\|CA
145	GW102	Landrace	CA\|CA
146	GW103	Landrace	CA\|CA
147	GW104	Landrace	CA\|CA
148	GW105	Landrace	CA\|CA
149	GW16	Landrace	C\|C
150	GW2	Landrace	CA\|CA
151	GW34	Landrace	C\|C
152	GW37	Landrace	C\|C
153	GW58	Landrace	CA\|CA
154	GW59	Landrace	C\|C
155	GW9	Landrace	C\|C
156	s4	Weedy	C\|C
157	s6	Improved	CA\|CA
158	s7	Landrace	CA\|CA
159	s8	Landrace	CA\|CA
160	s9	Landrace	CA\|CA
161	J101	Landrace	N\|N
162	J103	Improved	CA\|CA
163	J112	Landrace	CA\|CA
164	J113	Improved	CA\|CA
165	J129	Improved	CA\|CA
166	J130	Improved	CA\|CA
167	J136	Improved	CA\|CA
168	J152	Improved	CA\|CA
169	J2	Landrace	CA\|CA
170	J20	Landrace	CA\|CA
171	J4	Landrace	CA\|CA
172	J42	Landrace	CA\|CA
173	J44	Landrace	CA\|CA
174	J49	Landrace	C\|C
175	J52	Landrace	CA\|CA
176	J53	Landrace	C\|C
177	J54	Landrace	C\|C
178	J57	Landrace	N\|N
179	J59	Landrace	CA\|CA
180	J64	Landrace	CA\|CA
181	J66	Landrace	CA\|CA
182	J67	Landrace	N\|N
183	J69	Landrace	CA\|CA
184	J87	Landrace	C\|C
185	J99	Landrace	CA\|CA
186	s45	Landrace	CA\|CA
187	s11	Improved	CA\|CA
188	s10	Improved	CA\|CA
189	s46	Improved	CA\|CA
190	s12	Improved	CA\|CA
191	s13	Landrace	CA\|CA
192	MHMD	Landrace	CA\|CA
193	s14	Improved	CA\|CA
194	s15	Improved	CA\|CA
195	s34	Weedy	CA\|CA
196	s33	Wild sorghum	CA\|CA
197	s21	Wild sorghum	CA\|CA
198	s16	Wild sorghum	CA\|CA
199	s44	Improved	CA\|CA
200	s35	Landrace	CA\|CA
201	s31	Wild sorghum	CA\|CA
202	s17	Improved	CA\|CA
203	s18	Improved	CA\|CA
204	s20	Improved	CA\|CA
205	s19	Improved	CA\|CA
206	s22	Landrace	CA\|CA
207	s23	Landrace	CA\|CA
208	s24	Landrace	CA\|CA
209	s25	Landrace	CA\|CA
210	s26	Landrace	CA\|CA
211	s27	Landrace	CA\|CA
212	s28	Landrace	CA\|CA
213	s29	Landrace	CA\|CA
214	s30	Landrace	CA\|CA
215	SL25	Wild sorghum	CA\|CA
216	SL105	Wild sorghum	CA\|CA
217	SL108	Wild sorghum	CA\|CA
218	SL109	Wild sorghum	CA\|CA
219	SL12	Wild sorghum	CA\|CA
220	SL129	Wild sorghum	CA\|CA
221	SL130	Wild sorghum	CA\|CA
222	SL135	Wild sorghum	CA\|CA
223	SL136	Wild sorghum	CA\|CA
224	SL137	Wild sorghum	CA\|CA
225	SL138	Wild sorghum	CA\|CA
226	SL140	Wild sorghum	CA\|CA
227	SL141	Wild sorghum	CA\|CA
228	SL19	Wild sorghum	CA\|CA
229	SL28	Wild sorghum	CA\|CA
230	SL32	Wild sorghum	CA\|CA
231	SL35	Wild sorghum	CA\|CA
232	SL36	Wild sorghum	CA\|CA
233	SL37	Wild sorghum	CA\|CA
234	SL39	Wild sorghum	CA\|CA
235	SL41	Wild sorghum	CA\|CA
236	SL43	Wild sorghum	CA\|CA
237	SL47	Wild sorghum	CA\|CA
238	SL49	Wild sorghum	CA\|CA
239	SL51	Wild sorghum	CA\|CA
240	SL53	Wild sorghum	CA\|CA
241	SL62	Wild sorghum	CA\|CA
242	SL83	Wild sorghum	CA\|CA
243	SL97	Landrace	CA\|CA
244	s48	Improved	CA\|CA
245	Tu13	Wild sorghum	CA\|CA
246	Tu14	Wild sorghum	CA\|CA
247	Tu30	Wild sorghum	CA\|CA
248	Tu5	Wild sorghum	CA\|CA
249	WSC5	Landrace	C\|C
250	WSC15	Landrace	C\|C
251	WSC19	Landrace	CA\|CA
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	CA\|CA
254	WSC6	Landrace	C\|C
255	WSC61	Landrace	CA\|CA
256	WSC71	Improved	CA\|CA
257	WSC72	Landrace	CA\|CA
258	WSC79	Landrace	CA\|CA
259	WSC94	Landrace	CA\|CA
260	WSC99	Landrace	CA\|CA
261	WSC100	Landrace	CA\|CA
262	WSC104	Landrace	CA\|CA
263	WSC105	Landrace	CA\|CA
264	WSC12	Landrace	CA\|CA
265	WSC13	Landrace	CA\|CA
266	WSC16	Landrace	C\|C
267	WSC17	Landrace	CA\|CA
268	WSC18	Landrace	CA\|CA
269	WSC20	Landrace	N\|N
270	WSC24	Landrace	CA\|CA
271	WSC25	Landrace	C\|C
272	WSC29	Landrace	CA\|C
273	WSC31	Landrace	CA\|CA
274	WSC32	Landrace	CA\|CA
275	WSC34	Landrace	CA\|CA
276	WSC38	Landrace	CA\|CA
277	WSC39	Improved	CA\|C
278	WSC40	Landrace	CA\|CA
279	WSC54	Landrace	CA\|CA
280	WSC56	Landrace	CA\|CA
281	WSC59	Landrace	CA\|CA
282	WSC68	Landrace	CA\|CA
283	WSC70	Landrace	CA\|CA
284	WSC73	Landrace	CA\|CA
285	WSC81	Landrace	CA\|CA
286	WSC85	Improved	CA\|CA
287	WSC91	Landrace	CA\|CA
288	WSC93	Landrace	CA\|CA
289	WSC98	Landrace	C\|C

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825371	Sobic.001G000200	3_prime UTR variant \|MODIFIER	Sobic.001G000200.1	mRNA	1879		Sobic.001G000200.1.p

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