Variation ID : sbi33825373

Variation Detail



Variation ID sbi33825373
Type INDEL
Position Chr01 11406-11408
Ref /Alleles GTA/ G
MAF G: 0.025
5' Flank TCTAGATATGCTGCTGCTCTTTGCAACCCA
3' Flank TGGCGAATATTGGCGTGCAATCTCGGTACG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved GTA|GTA
2 103 Improved GTA|GTA
3 107 Improved GTA|G
4 11 Improved GTA|GTA
5 110 Improved GTA|GTA
6 123 Landrace GTA|GTA
7 131 Improved GTA|GTA
8 132 Improved GTA|GTA
9 135 Improved GTA|GTA
10 137 Improved GTA|GTA
11 138 Improved GTA|GTA
12 14 Improved GTA|GTA
13 140 Improved GTA|GTA
14 141 Improved GTA|GTA
15 144 Improved GTA|GTA
16 150 Improved GTA|GTA
17 154 Improved GTA|GTA
18 159 Landrace GTA|GTA
19 16 Improved GTA|GTA
20 161 Landrace N|N
21 167 Improved GTA|GTA
22 168 Improved GTA|GTA
23 170 Improved GTA|GTA
24 173 Improved N|N
25 175 Improved GTA|GTA
26 176 Improved GTA|GTA
27 182 Landrace GTA|GTA
28 186 Improved GTA|GTA
29 190 Improved N|N
30 192 Improved GTA|GTA
31 194 Improved GTA|GTA
32 195 Improved GTA|GTA
33 197 Improved GTA|GTA
34 J22 Landrace GTA|GTA
35 J26 Landrace N|N
36 J5 Landrace GTA|GTA
37 J50 Landrace GTA|GTA
38 2001 Landrace GTA|GTA
39 2005 Improved GTA|GTA
40 2008 Improved GTA|GTA
41 2009 Landrace GTA|GTA
42 201 Improved GTA|GTA
43 2010 Landrace GTA|GTA
44 2016 Improved GTA|GTA
45 2019 Improved GTA|GTA
46 202 Improved GTA|GTA
47 2021 Improved GTA|GTA
48 2023 Improved GTA|GTA
49 2026 Improved GTA|GTA
50 2029 Improved GTA|G
51 2030 Landrace GTA|GTA
52 2031 Landrace GTA|GTA
53 2036 Improved GTA|GTA
54 2037 Improved GTA|GTA
55 2038 Improved GTA|GTA
56 2039 Improved GTA|G
57 204 Improved GTA|GTA
58 2042 Improved GTA|G
59 2043 Improved GTA|G
60 2048 Improved GTA|G
61 2049 Improved GTA|GTA
62 205 Improved GTA|GTA
63 2050 Improved GTA|GTA
64 2052 Improved GTA|GTA
65 2054 Improved GTA|GTA
66 2056 Improved GTA|GTA
67 2059 Improved GTA|G
68 206 Improved GTA|GTA
69 2064 Improved GTA|GTA
70 2065 Improved GTA|GTA
71 2067 Improved GTA|GTA
72 2068 Improved GTA|GTA
73 2069 Improved GTA|GTA
74 2071 Improved GTA|GTA
75 2074 Improved GTA|GTA
76 2075 Improved GTA|GTA
77 2076 Improved GTA|GTA
78 2080 Improved GTA|GTA
79 2081 Improved GTA|GTA
80 2082 Improved GTA|GTA
81 2086 Improved GTA|GTA
82 2088 Improved GTA|GTA
83 260 Wild sorghum N|N
84 261 Improved GTA|GTA
85 262 Improved GTA|GTA
86 263 Improved GTA|GTA
87 286 Improved GTA|GTA
88 29 Improved GTA|GTA
89 3 Improved GTA|GTA
90 302546 S.propinquum GTA|GTA
91 31 Improved GTA|GTA
92 32 Improved GTA|GTA
93 34 Improved GTA|GTA
94 346 Landrace GTA|GTA
95 348 Wild sorghum GTA|GTA
96 353 Wild sorghum GTA|GTA
97 355 Wild sorghum GTA|GTA
98 357 Wild sorghum GTA|GTA
99 364 Wild sorghum GTA|GTA
100 367 Landrace GTA|GTA
101 s37 S.propinquum GTA|GTA
102 s38 S.propinquum GTA|GTA
103 370 Landrace GTA|GTA
104 377 Wild sorghum GTA|GTA
105 392 Wild sorghum GTA|GTA
106 394 Wild sorghum GTA|GTA
107 40 Improved GTA|GTA
108 42 Improved GTA|GTA
109 43 Improved GTA|GTA
110 45 Improved GTA|GTA
111 47 Improved GTA|GTA
112 48 Improved GTA|GTA
113 51 Improved GTA|GTA
114 53 Improved GTA|GTA
115 56 Improved GTA|GTA
116 61 Improved GTA|GTA
117 62 Improved GTA|GTA
118 66 Landrace GTA|G
119 67 Improved GTA|GTA
120 68 Improved GTA|GTA
121 70 Improved GTA|G
122 73 Improved GTA|GTA
123 75 Improved GTA|GTA
124 88 Improved GTA|GTA
125 89 Improved GTA|GTA
126 91 Improved GTA|GTA
127 92 Improved GTA|GTA
128 93 Improved GTA|GTA
129 94 Improved GTA|GTA
130 95 Improved GTA|GTA
131 96 Improved GTA|GTA
132 97 Improved GTA|GTA
133 s1 Improved GTA|GTA
134 s36 Wild sorghum GTA|GTA
135 s2 Landrace GTA|GTA
136 s3 Improved GTA|GTA
137 s32 Improved GTA|GTA
138 s43 Weedy GTA|GTA
139 s40 Landrace GTA|GTA
140 s41 Weedy GTA|GTA
141 s39 Landrace GTA|GTA
142 s42 Landrace GTA|GTA
143 s47 Improved GTA|GTA
144 s5 Landrace GTA|GTA
145 GW102 Landrace GTA|GTA
146 GW103 Landrace GTA|GTA
147 GW104 Landrace GTA|GTA
148 GW105 Landrace GTA|GTA
149 GW16 Landrace GTA|GTA
150 GW2 Landrace GTA|GTA
151 GW34 Landrace GTA|GTA
152 GW37 Landrace GTA|GTA
153 GW58 Landrace GTA|GTA
154 GW59 Landrace GTA|GTA
155 GW9 Landrace GTA|GTA
156 s4 Weedy GTA|GTA
157 s6 Improved GTA|GTA
158 s7 Landrace GTA|GTA
159 s8 Landrace GTA|GTA
160 s9 Landrace GTA|GTA
161 J101 Landrace GTA|GTA
162 J103 Improved GTA|GTA
163 J112 Landrace GTA|GTA
164 J113 Improved GTA|GTA
165 J129 Improved GTA|GTA
166 J130 Improved GTA|GTA
167 J136 Improved GTA|GTA
168 J152 Improved GTA|GTA
169 J2 Landrace GTA|GTA
170 J20 Landrace GTA|GTA
171 J4 Landrace GTA|GTA
172 J42 Landrace GTA|GTA
173 J44 Landrace GTA|GTA
174 J49 Landrace N|N
175 J52 Landrace GTA|GTA
176 J53 Landrace GTA|GTA
177 J54 Landrace GTA|GTA
178 J57 Landrace N|N
179 J59 Landrace GTA|GTA
180 J64 Landrace GTA|GTA
181 J66 Landrace GTA|GTA
182 J67 Landrace GTA|GTA
183 J69 Landrace GTA|GTA
184 J87 Landrace GTA|GTA
185 J99 Landrace GTA|GTA
186 s45 Landrace GTA|GTA
187 s11 Improved GTA|GTA
188 s10 Improved GTA|GTA
189 s46 Improved GTA|GTA
190 s12 Improved GTA|GTA
191 s13 Landrace GTA|GTA
192 MHMD Landrace GTA|GTA
193 s14 Improved GTA|GTA
194 s15 Improved GTA|GTA
195 s34 Weedy GTA|GTA
196 s33 Wild sorghum GTA|GTA
197 s21 Wild sorghum GTA|GTA
198 s16 Wild sorghum GTA|GTA
199 s44 Improved GTA|GTA
200 s35 Landrace GTA|GTA
201 s31 Wild sorghum GTA|GTA
202 s17 Improved GTA|GTA
203 s18 Improved GTA|GTA
204 s20 Improved GTA|GTA
205 s19 Improved GTA|GTA
206 s22 Landrace GTA|GTA
207 s23 Landrace GTA|GTA
208 s24 Landrace GTA|GTA
209 s25 Landrace GTA|GTA
210 s26 Landrace GTA|GTA
211 s27 Landrace GTA|GTA
212 s28 Landrace GTA|GTA
213 s29 Landrace GTA|GTA
214 s30 Landrace GTA|GTA
215 SL25 Wild sorghum GTA|GTA
216 SL105 Wild sorghum GTA|GTA
217 SL108 Wild sorghum GTA|GTA
218 SL109 Wild sorghum GTA|GTA
219 SL12 Wild sorghum GTA|GTA
220 SL129 Wild sorghum GTA|GTA
221 SL130 Wild sorghum GTA|GTA
222 SL135 Wild sorghum GTA|GTA
223 SL136 Wild sorghum GTA|GTA
224 SL137 Wild sorghum GTA|GTA
225 SL138 Wild sorghum GTA|GTA
226 SL140 Wild sorghum GTA|GTA
227 SL141 Wild sorghum GTA|GTA
228 SL19 Wild sorghum GTA|GTA
229 SL28 Wild sorghum GTA|GTA
230 SL32 Wild sorghum GTA|GTA
231 SL35 Wild sorghum GTA|GTA
232 SL36 Wild sorghum GTA|GTA
233 SL37 Wild sorghum GTA|GTA
234 SL39 Wild sorghum GTA|GTA
235 SL41 Wild sorghum GTA|GTA
236 SL43 Wild sorghum GTA|GTA
237 SL47 Wild sorghum GTA|GTA
238 SL49 Wild sorghum GTA|GTA
239 SL51 Wild sorghum GTA|GTA
240 SL53 Wild sorghum GTA|GTA
241 SL62 Wild sorghum GTA|GTA
242 SL83 Wild sorghum GTA|GTA
243 SL97 Landrace GTA|GTA
244 s48 Improved GTA|GTA
245 Tu13 Wild sorghum GTA|GTA
246 Tu14 Wild sorghum GTA|GTA
247 Tu30 Wild sorghum GTA|GTA
248 Tu5 Wild sorghum GTA|GTA
249 WSC5 Landrace GTA|GTA
250 WSC15 Landrace N|N
251 WSC19 Landrace GTA|GTA
252 WSC30 Landrace GTA|GTA
253 WSC52 Landrace GTA|G
254 WSC6 Landrace GTA|GTA
255 WSC61 Landrace GTA|GTA
256 WSC71 Improved GTA|GTA
257 WSC72 Landrace GTA|GTA
258 WSC79 Landrace GTA|GTA
259 WSC94 Landrace GTA|GTA
260 WSC99 Landrace GTA|GTA
261 WSC100 Landrace GTA|GTA
262 WSC104 Landrace GTA|GTA
263 WSC105 Landrace GTA|GTA
264 WSC12 Landrace GTA|GTA
265 WSC13 Landrace N|N
266 WSC16 Landrace GTA|GTA
267 WSC17 Landrace GTA|GTA
268 WSC18 Landrace GTA|GTA
269 WSC20 Landrace N|N
270 WSC24 Landrace GTA|GTA
271 WSC25 Landrace GTA|GTA
272 WSC29 Landrace GTA|G
273 WSC31 Landrace GTA|G
274 WSC32 Landrace GTA|GTA
275 WSC34 Landrace GTA|GTA
276 WSC38 Landrace GTA|GTA
277 WSC39 Improved GTA|G
278 WSC40 Landrace GTA|G
279 WSC54 Landrace GTA|GTA
280 WSC56 Landrace GTA|GTA
281 WSC59 Landrace GTA|GTA
282 WSC68 Landrace GTA|GTA
283 WSC70 Landrace GTA|GTA
284 WSC73 Landrace GTA|GTA
285 WSC81 Landrace GTA|GTA
286 WSC85 Improved GTA|GTA
287 WSC91 Landrace GTA|GTA
288 WSC93 Landrace GTA|GTA
289 WSC98 Landrace GTA|GTA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825373 Sobic.001G000200 3_prime UTR variant |MODIFIER Sobic.001G000200.1 mRNA 1754 Sobic.001G000200.1.p

Genome Browser