sorgsd

Variation ID : sbi33825374

Variation Detail

Variation ID	sbi33825374
Type	INDEL
Position	Chr01 11410-11418
Ref /Alleles	GGCGAATAT/ G
MAF	G: 0.025
5' Flank	GATATGCTGCTGCTCTTTGCAACCCAGTAT
3' Flank	TGGCGTGCAATCTCGGTACGTATCTCGCCA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GGCGAATAT\|GGCGAATAT
2	103	Improved	GGCGAATAT\|GGCGAATAT
3	107	Improved	GGCGAATAT\|G
4	11	Improved	GGCGAATAT\|GGCGAATAT
5	110	Improved	GGCGAATAT\|GGCGAATAT
6	123	Landrace	GGCGAATAT\|GGCGAATAT
7	131	Improved	GGCGAATAT\|GGCGAATAT
8	132	Improved	GGCGAATAT\|GGCGAATAT
9	135	Improved	GGCGAATAT\|GGCGAATAT
10	137	Improved	GGCGAATAT\|GGCGAATAT
11	138	Improved	GGCGAATAT\|GGCGAATAT
12	14	Improved	GGCGAATAT\|GGCGAATAT
13	140	Improved	GGCGAATAT\|GGCGAATAT
14	141	Improved	GGCGAATAT\|GGCGAATAT
15	144	Improved	GGCGAATAT\|GGCGAATAT
16	150	Improved	GGCGAATAT\|GGCGAATAT
17	154	Improved	GGCGAATAT\|GGCGAATAT
18	159	Landrace	GGCGAATAT\|GGCGAATAT
19	16	Improved	GGCGAATAT\|GGCGAATAT
20	161	Landrace	N\|N
21	167	Improved	GGCGAATAT\|GGCGAATAT
22	168	Improved	GGCGAATAT\|GGCGAATAT
23	170	Improved	GGCGAATAT\|GGCGAATAT
24	173	Improved	N\|N
25	175	Improved	GGCGAATAT\|GGCGAATAT
26	176	Improved	GGCGAATAT\|GGCGAATAT
27	182	Landrace	GGCGAATAT\|GGCGAATAT
28	186	Improved	GGCGAATAT\|GGCGAATAT
29	190	Improved	N\|N
30	192	Improved	GGCGAATAT\|GGCGAATAT
31	194	Improved	GGCGAATAT\|GGCGAATAT
32	195	Improved	GGCGAATAT\|GGCGAATAT
33	197	Improved	GGCGAATAT\|GGCGAATAT
34	J22	Landrace	GGCGAATAT\|GGCGAATAT
35	J26	Landrace	N\|N
36	J5	Landrace	GGCGAATAT\|GGCGAATAT
37	J50	Landrace	GGCGAATAT\|GGCGAATAT
38	2001	Landrace	GGCGAATAT\|GGCGAATAT
39	2005	Improved	GGCGAATAT\|GGCGAATAT
40	2008	Improved	GGCGAATAT\|GGCGAATAT
41	2009	Landrace	GGCGAATAT\|GGCGAATAT
42	201	Improved	GGCGAATAT\|GGCGAATAT
43	2010	Landrace	GGCGAATAT\|GGCGAATAT
44	2016	Improved	GGCGAATAT\|GGCGAATAT
45	2019	Improved	GGCGAATAT\|GGCGAATAT
46	202	Improved	GGCGAATAT\|GGCGAATAT
47	2021	Improved	GGCGAATAT\|GGCGAATAT
48	2023	Improved	GGCGAATAT\|GGCGAATAT
49	2026	Improved	GGCGAATAT\|GGCGAATAT
50	2029	Improved	GGCGAATAT\|G
51	2030	Landrace	GGCGAATAT\|GGCGAATAT
52	2031	Landrace	GGCGAATAT\|GGCGAATAT
53	2036	Improved	GGCGAATAT\|GGCGAATAT
54	2037	Improved	GGCGAATAT\|GGCGAATAT
55	2038	Improved	GGCGAATAT\|GGCGAATAT
56	2039	Improved	GGCGAATAT\|G
57	204	Improved	GGCGAATAT\|GGCGAATAT
58	2042	Improved	GGCGAATAT\|G
59	2043	Improved	GGCGAATAT\|G
60	2048	Improved	GGCGAATAT\|G
61	2049	Improved	GGCGAATAT\|GGCGAATAT
62	205	Improved	GGCGAATAT\|GGCGAATAT
63	2050	Improved	GGCGAATAT\|GGCGAATAT
64	2052	Improved	GGCGAATAT\|GGCGAATAT
65	2054	Improved	GGCGAATAT\|GGCGAATAT
66	2056	Improved	GGCGAATAT\|GGCGAATAT
67	2059	Improved	GGCGAATAT\|G
68	206	Improved	GGCGAATAT\|GGCGAATAT
69	2064	Improved	GGCGAATAT\|GGCGAATAT
70	2065	Improved	GGCGAATAT\|GGCGAATAT
71	2067	Improved	GGCGAATAT\|GGCGAATAT
72	2068	Improved	GGCGAATAT\|GGCGAATAT
73	2069	Improved	GGCGAATAT\|GGCGAATAT
74	2071	Improved	GGCGAATAT\|GGCGAATAT
75	2074	Improved	GGCGAATAT\|GGCGAATAT
76	2075	Improved	GGCGAATAT\|GGCGAATAT
77	2076	Improved	GGCGAATAT\|GGCGAATAT
78	2080	Improved	GGCGAATAT\|GGCGAATAT
79	2081	Improved	GGCGAATAT\|GGCGAATAT
80	2082	Improved	GGCGAATAT\|GGCGAATAT
81	2086	Improved	GGCGAATAT\|GGCGAATAT
82	2088	Improved	GGCGAATAT\|GGCGAATAT
83	260	Wild sorghum	N\|N
84	261	Improved	GGCGAATAT\|GGCGAATAT
85	262	Improved	GGCGAATAT\|GGCGAATAT
86	263	Improved	GGCGAATAT\|GGCGAATAT
87	286	Improved	GGCGAATAT\|GGCGAATAT
88	29	Improved	GGCGAATAT\|GGCGAATAT
89	3	Improved	GGCGAATAT\|GGCGAATAT
90	302546	S.propinquum	GGCGAATAT\|GGCGAATAT
91	31	Improved	GGCGAATAT\|GGCGAATAT
92	32	Improved	GGCGAATAT\|GGCGAATAT
93	34	Improved	GGCGAATAT\|GGCGAATAT
94	346	Landrace	GGCGAATAT\|GGCGAATAT
95	348	Wild sorghum	GGCGAATAT\|GGCGAATAT
96	353	Wild sorghum	GGCGAATAT\|GGCGAATAT
97	355	Wild sorghum	GGCGAATAT\|GGCGAATAT
98	357	Wild sorghum	GGCGAATAT\|GGCGAATAT
99	364	Wild sorghum	GGCGAATAT\|GGCGAATAT
100	367	Landrace	GGCGAATAT\|GGCGAATAT
101	s37	S.propinquum	GGCGAATAT\|GGCGAATAT
102	s38	S.propinquum	GGCGAATAT\|GGCGAATAT
103	370	Landrace	GGCGAATAT\|GGCGAATAT
104	377	Wild sorghum	GGCGAATAT\|GGCGAATAT
105	392	Wild sorghum	GGCGAATAT\|GGCGAATAT
106	394	Wild sorghum	GGCGAATAT\|GGCGAATAT
107	40	Improved	GGCGAATAT\|GGCGAATAT
108	42	Improved	GGCGAATAT\|GGCGAATAT
109	43	Improved	GGCGAATAT\|GGCGAATAT
110	45	Improved	GGCGAATAT\|GGCGAATAT
111	47	Improved	GGCGAATAT\|GGCGAATAT
112	48	Improved	GGCGAATAT\|GGCGAATAT
113	51	Improved	GGCGAATAT\|GGCGAATAT
114	53	Improved	GGCGAATAT\|GGCGAATAT
115	56	Improved	GGCGAATAT\|GGCGAATAT
116	61	Improved	GGCGAATAT\|GGCGAATAT
117	62	Improved	GGCGAATAT\|GGCGAATAT
118	66	Landrace	GGCGAATAT\|G
119	67	Improved	GGCGAATAT\|GGCGAATAT
120	68	Improved	GGCGAATAT\|GGCGAATAT
121	70	Improved	GGCGAATAT\|G
122	73	Improved	GGCGAATAT\|GGCGAATAT
123	75	Improved	GGCGAATAT\|GGCGAATAT
124	88	Improved	GGCGAATAT\|GGCGAATAT
125	89	Improved	GGCGAATAT\|GGCGAATAT
126	91	Improved	GGCGAATAT\|GGCGAATAT
127	92	Improved	GGCGAATAT\|GGCGAATAT
128	93	Improved	GGCGAATAT\|GGCGAATAT
129	94	Improved	GGCGAATAT\|GGCGAATAT
130	95	Improved	GGCGAATAT\|GGCGAATAT
131	96	Improved	GGCGAATAT\|GGCGAATAT
132	97	Improved	GGCGAATAT\|GGCGAATAT
133	s1	Improved	GGCGAATAT\|GGCGAATAT
134	s36	Wild sorghum	GGCGAATAT\|GGCGAATAT
135	s2	Landrace	GGCGAATAT\|GGCGAATAT
136	s3	Improved	GGCGAATAT\|GGCGAATAT
137	s32	Improved	GGCGAATAT\|GGCGAATAT
138	s43	Weedy	GGCGAATAT\|GGCGAATAT
139	s40	Landrace	GGCGAATAT\|GGCGAATAT
140	s41	Weedy	GGCGAATAT\|GGCGAATAT
141	s39	Landrace	GGCGAATAT\|GGCGAATAT
142	s42	Landrace	GGCGAATAT\|GGCGAATAT
143	s47	Improved	GGCGAATAT\|GGCGAATAT
144	s5	Landrace	GGCGAATAT\|GGCGAATAT
145	GW102	Landrace	GGCGAATAT\|GGCGAATAT
146	GW103	Landrace	GGCGAATAT\|GGCGAATAT
147	GW104	Landrace	GGCGAATAT\|GGCGAATAT
148	GW105	Landrace	GGCGAATAT\|GGCGAATAT
149	GW16	Landrace	GGCGAATAT\|GGCGAATAT
150	GW2	Landrace	GGCGAATAT\|GGCGAATAT
151	GW34	Landrace	GGCGAATAT\|GGCGAATAT
152	GW37	Landrace	GGCGAATAT\|GGCGAATAT
153	GW58	Landrace	GGCGAATAT\|GGCGAATAT
154	GW59	Landrace	GGCGAATAT\|GGCGAATAT
155	GW9	Landrace	GGCGAATAT\|GGCGAATAT
156	s4	Weedy	GGCGAATAT\|GGCGAATAT
157	s6	Improved	GGCGAATAT\|GGCGAATAT
158	s7	Landrace	GGCGAATAT\|GGCGAATAT
159	s8	Landrace	GGCGAATAT\|GGCGAATAT
160	s9	Landrace	GGCGAATAT\|GGCGAATAT
161	J101	Landrace	GGCGAATAT\|GGCGAATAT
162	J103	Improved	GGCGAATAT\|GGCGAATAT
163	J112	Landrace	GGCGAATAT\|GGCGAATAT
164	J113	Improved	GGCGAATAT\|GGCGAATAT
165	J129	Improved	GGCGAATAT\|GGCGAATAT
166	J130	Improved	GGCGAATAT\|GGCGAATAT
167	J136	Improved	GGCGAATAT\|GGCGAATAT
168	J152	Improved	GGCGAATAT\|GGCGAATAT
169	J2	Landrace	GGCGAATAT\|GGCGAATAT
170	J20	Landrace	GGCGAATAT\|GGCGAATAT
171	J4	Landrace	GGCGAATAT\|GGCGAATAT
172	J42	Landrace	GGCGAATAT\|GGCGAATAT
173	J44	Landrace	GGCGAATAT\|GGCGAATAT
174	J49	Landrace	N\|N
175	J52	Landrace	GGCGAATAT\|GGCGAATAT
176	J53	Landrace	GGCGAATAT\|GGCGAATAT
177	J54	Landrace	GGCGAATAT\|GGCGAATAT
178	J57	Landrace	GGCGAATAT\|GGCGAATAT
179	J59	Landrace	GGCGAATAT\|GGCGAATAT
180	J64	Landrace	GGCGAATAT\|GGCGAATAT
181	J66	Landrace	GGCGAATAT\|GGCGAATAT
182	J67	Landrace	GGCGAATAT\|GGCGAATAT
183	J69	Landrace	GGCGAATAT\|GGCGAATAT
184	J87	Landrace	GGCGAATAT\|GGCGAATAT
185	J99	Landrace	GGCGAATAT\|GGCGAATAT
186	s45	Landrace	GGCGAATAT\|GGCGAATAT
187	s11	Improved	GGCGAATAT\|GGCGAATAT
188	s10	Improved	GGCGAATAT\|GGCGAATAT
189	s46	Improved	GGCGAATAT\|GGCGAATAT
190	s12	Improved	GGCGAATAT\|GGCGAATAT
191	s13	Landrace	GGCGAATAT\|GGCGAATAT
192	MHMD	Landrace	GGCGAATAT\|GGCGAATAT
193	s14	Improved	GGCGAATAT\|GGCGAATAT
194	s15	Improved	GGCGAATAT\|GGCGAATAT
195	s34	Weedy	GGCGAATAT\|GGCGAATAT
196	s33	Wild sorghum	GGCGAATAT\|GGCGAATAT
197	s21	Wild sorghum	GGCGAATAT\|GGCGAATAT
198	s16	Wild sorghum	GGCGAATAT\|GGCGAATAT
199	s44	Improved	GGCGAATAT\|GGCGAATAT
200	s35	Landrace	GGCGAATAT\|GGCGAATAT
201	s31	Wild sorghum	GGCGAATAT\|GGCGAATAT
202	s17	Improved	GGCGAATAT\|GGCGAATAT
203	s18	Improved	GGCGAATAT\|GGCGAATAT
204	s20	Improved	GGCGAATAT\|GGCGAATAT
205	s19	Improved	GGCGAATAT\|GGCGAATAT
206	s22	Landrace	GGCGAATAT\|GGCGAATAT
207	s23	Landrace	GGCGAATAT\|GGCGAATAT
208	s24	Landrace	GGCGAATAT\|GGCGAATAT
209	s25	Landrace	GGCGAATAT\|GGCGAATAT
210	s26	Landrace	GGCGAATAT\|GGCGAATAT
211	s27	Landrace	GGCGAATAT\|GGCGAATAT
212	s28	Landrace	GGCGAATAT\|GGCGAATAT
213	s29	Landrace	GGCGAATAT\|GGCGAATAT
214	s30	Landrace	GGCGAATAT\|GGCGAATAT
215	SL25	Wild sorghum	GGCGAATAT\|GGCGAATAT
216	SL105	Wild sorghum	GGCGAATAT\|GGCGAATAT
217	SL108	Wild sorghum	GGCGAATAT\|GGCGAATAT
218	SL109	Wild sorghum	GGCGAATAT\|GGCGAATAT
219	SL12	Wild sorghum	GGCGAATAT\|GGCGAATAT
220	SL129	Wild sorghum	GGCGAATAT\|GGCGAATAT
221	SL130	Wild sorghum	GGCGAATAT\|GGCGAATAT
222	SL135	Wild sorghum	GGCGAATAT\|GGCGAATAT
223	SL136	Wild sorghum	GGCGAATAT\|GGCGAATAT
224	SL137	Wild sorghum	GGCGAATAT\|GGCGAATAT
225	SL138	Wild sorghum	GGCGAATAT\|GGCGAATAT
226	SL140	Wild sorghum	GGCGAATAT\|GGCGAATAT
227	SL141	Wild sorghum	GGCGAATAT\|GGCGAATAT
228	SL19	Wild sorghum	GGCGAATAT\|GGCGAATAT
229	SL28	Wild sorghum	GGCGAATAT\|GGCGAATAT
230	SL32	Wild sorghum	GGCGAATAT\|GGCGAATAT
231	SL35	Wild sorghum	GGCGAATAT\|GGCGAATAT
232	SL36	Wild sorghum	GGCGAATAT\|GGCGAATAT
233	SL37	Wild sorghum	GGCGAATAT\|GGCGAATAT
234	SL39	Wild sorghum	GGCGAATAT\|GGCGAATAT
235	SL41	Wild sorghum	GGCGAATAT\|GGCGAATAT
236	SL43	Wild sorghum	GGCGAATAT\|GGCGAATAT
237	SL47	Wild sorghum	GGCGAATAT\|GGCGAATAT
238	SL49	Wild sorghum	GGCGAATAT\|GGCGAATAT
239	SL51	Wild sorghum	GGCGAATAT\|GGCGAATAT
240	SL53	Wild sorghum	GGCGAATAT\|GGCGAATAT
241	SL62	Wild sorghum	GGCGAATAT\|GGCGAATAT
242	SL83	Wild sorghum	GGCGAATAT\|GGCGAATAT
243	SL97	Landrace	GGCGAATAT\|GGCGAATAT
244	s48	Improved	GGCGAATAT\|GGCGAATAT
245	Tu13	Wild sorghum	GGCGAATAT\|GGCGAATAT
246	Tu14	Wild sorghum	GGCGAATAT\|GGCGAATAT
247	Tu30	Wild sorghum	GGCGAATAT\|GGCGAATAT
248	Tu5	Wild sorghum	GGCGAATAT\|GGCGAATAT
249	WSC5	Landrace	GGCGAATAT\|GGCGAATAT
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	GGCGAATAT\|GGCGAATAT
252	WSC30	Landrace	GGCGAATAT\|GGCGAATAT
253	WSC52	Landrace	GGCGAATAT\|G
254	WSC6	Landrace	GGCGAATAT\|GGCGAATAT
255	WSC61	Landrace	GGCGAATAT\|GGCGAATAT
256	WSC71	Improved	GGCGAATAT\|GGCGAATAT
257	WSC72	Landrace	GGCGAATAT\|GGCGAATAT
258	WSC79	Landrace	GGCGAATAT\|GGCGAATAT
259	WSC94	Landrace	GGCGAATAT\|GGCGAATAT
260	WSC99	Landrace	GGCGAATAT\|GGCGAATAT
261	WSC100	Landrace	N\|N
262	WSC104	Landrace	GGCGAATAT\|GGCGAATAT
263	WSC105	Landrace	GGCGAATAT\|GGCGAATAT
264	WSC12	Landrace	GGCGAATAT\|GGCGAATAT
265	WSC13	Landrace	N\|N
266	WSC16	Landrace	GGCGAATAT\|GGCGAATAT
267	WSC17	Landrace	GGCGAATAT\|GGCGAATAT
268	WSC18	Landrace	GGCGAATAT\|GGCGAATAT
269	WSC20	Landrace	N\|N
270	WSC24	Landrace	GGCGAATAT\|GGCGAATAT
271	WSC25	Landrace	GGCGAATAT\|GGCGAATAT
272	WSC29	Landrace	GGCGAATAT\|G
273	WSC31	Landrace	GGCGAATAT\|G
274	WSC32	Landrace	GGCGAATAT\|GGCGAATAT
275	WSC34	Landrace	GGCGAATAT\|GGCGAATAT
276	WSC38	Landrace	GGCGAATAT\|GGCGAATAT
277	WSC39	Improved	GGCGAATAT\|G
278	WSC40	Landrace	GGCGAATAT\|G
279	WSC54	Landrace	GGCGAATAT\|GGCGAATAT
280	WSC56	Landrace	GGCGAATAT\|GGCGAATAT
281	WSC59	Landrace	GGCGAATAT\|GGCGAATAT
282	WSC68	Landrace	GGCGAATAT\|GGCGAATAT
283	WSC70	Landrace	GGCGAATAT\|GGCGAATAT
284	WSC73	Landrace	GGCGAATAT\|GGCGAATAT
285	WSC81	Landrace	GGCGAATAT\|GGCGAATAT
286	WSC85	Improved	GGCGAATAT\|GGCGAATAT
287	WSC91	Landrace	GGCGAATAT\|GGCGAATAT
288	WSC93	Landrace	GGCGAATAT\|GGCGAATAT
289	WSC98	Landrace	GGCGAATAT\|GGCGAATAT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825374	Sobic.001G000200	3_prime UTR variant \|MODIFIER	Sobic.001G000200.1	mRNA	1744		Sobic.001G000200.1.p

Genome Browser