Variation ID : sbi33825374

Variation Detail



Variation ID sbi33825374
Type INDEL
Position Chr01 11410-11418
Ref /Alleles GGCGAATAT/ G
MAF G: 0.025
5' Flank GATATGCTGCTGCTCTTTGCAACCCAGTAT
3' Flank TGGCGTGCAATCTCGGTACGTATCTCGCCA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved GGCGAATAT|GGCGAATAT
2 103 Improved GGCGAATAT|GGCGAATAT
3 107 Improved GGCGAATAT|G
4 11 Improved GGCGAATAT|GGCGAATAT
5 110 Improved GGCGAATAT|GGCGAATAT
6 123 Landrace GGCGAATAT|GGCGAATAT
7 131 Improved GGCGAATAT|GGCGAATAT
8 132 Improved GGCGAATAT|GGCGAATAT
9 135 Improved GGCGAATAT|GGCGAATAT
10 137 Improved GGCGAATAT|GGCGAATAT
11 138 Improved GGCGAATAT|GGCGAATAT
12 14 Improved GGCGAATAT|GGCGAATAT
13 140 Improved GGCGAATAT|GGCGAATAT
14 141 Improved GGCGAATAT|GGCGAATAT
15 144 Improved GGCGAATAT|GGCGAATAT
16 150 Improved GGCGAATAT|GGCGAATAT
17 154 Improved GGCGAATAT|GGCGAATAT
18 159 Landrace GGCGAATAT|GGCGAATAT
19 16 Improved GGCGAATAT|GGCGAATAT
20 161 Landrace N|N
21 167 Improved GGCGAATAT|GGCGAATAT
22 168 Improved GGCGAATAT|GGCGAATAT
23 170 Improved GGCGAATAT|GGCGAATAT
24 173 Improved N|N
25 175 Improved GGCGAATAT|GGCGAATAT
26 176 Improved GGCGAATAT|GGCGAATAT
27 182 Landrace GGCGAATAT|GGCGAATAT
28 186 Improved GGCGAATAT|GGCGAATAT
29 190 Improved N|N
30 192 Improved GGCGAATAT|GGCGAATAT
31 194 Improved GGCGAATAT|GGCGAATAT
32 195 Improved GGCGAATAT|GGCGAATAT
33 197 Improved GGCGAATAT|GGCGAATAT
34 J22 Landrace GGCGAATAT|GGCGAATAT
35 J26 Landrace N|N
36 J5 Landrace GGCGAATAT|GGCGAATAT
37 J50 Landrace GGCGAATAT|GGCGAATAT
38 2001 Landrace GGCGAATAT|GGCGAATAT
39 2005 Improved GGCGAATAT|GGCGAATAT
40 2008 Improved GGCGAATAT|GGCGAATAT
41 2009 Landrace GGCGAATAT|GGCGAATAT
42 201 Improved GGCGAATAT|GGCGAATAT
43 2010 Landrace GGCGAATAT|GGCGAATAT
44 2016 Improved GGCGAATAT|GGCGAATAT
45 2019 Improved GGCGAATAT|GGCGAATAT
46 202 Improved GGCGAATAT|GGCGAATAT
47 2021 Improved GGCGAATAT|GGCGAATAT
48 2023 Improved GGCGAATAT|GGCGAATAT
49 2026 Improved GGCGAATAT|GGCGAATAT
50 2029 Improved GGCGAATAT|G
51 2030 Landrace GGCGAATAT|GGCGAATAT
52 2031 Landrace GGCGAATAT|GGCGAATAT
53 2036 Improved GGCGAATAT|GGCGAATAT
54 2037 Improved GGCGAATAT|GGCGAATAT
55 2038 Improved GGCGAATAT|GGCGAATAT
56 2039 Improved GGCGAATAT|G
57 204 Improved GGCGAATAT|GGCGAATAT
58 2042 Improved GGCGAATAT|G
59 2043 Improved GGCGAATAT|G
60 2048 Improved GGCGAATAT|G
61 2049 Improved GGCGAATAT|GGCGAATAT
62 205 Improved GGCGAATAT|GGCGAATAT
63 2050 Improved GGCGAATAT|GGCGAATAT
64 2052 Improved GGCGAATAT|GGCGAATAT
65 2054 Improved GGCGAATAT|GGCGAATAT
66 2056 Improved GGCGAATAT|GGCGAATAT
67 2059 Improved GGCGAATAT|G
68 206 Improved GGCGAATAT|GGCGAATAT
69 2064 Improved GGCGAATAT|GGCGAATAT
70 2065 Improved GGCGAATAT|GGCGAATAT
71 2067 Improved GGCGAATAT|GGCGAATAT
72 2068 Improved GGCGAATAT|GGCGAATAT
73 2069 Improved GGCGAATAT|GGCGAATAT
74 2071 Improved GGCGAATAT|GGCGAATAT
75 2074 Improved GGCGAATAT|GGCGAATAT
76 2075 Improved GGCGAATAT|GGCGAATAT
77 2076 Improved GGCGAATAT|GGCGAATAT
78 2080 Improved GGCGAATAT|GGCGAATAT
79 2081 Improved GGCGAATAT|GGCGAATAT
80 2082 Improved GGCGAATAT|GGCGAATAT
81 2086 Improved GGCGAATAT|GGCGAATAT
82 2088 Improved GGCGAATAT|GGCGAATAT
83 260 Wild sorghum N|N
84 261 Improved GGCGAATAT|GGCGAATAT
85 262 Improved GGCGAATAT|GGCGAATAT
86 263 Improved GGCGAATAT|GGCGAATAT
87 286 Improved GGCGAATAT|GGCGAATAT
88 29 Improved GGCGAATAT|GGCGAATAT
89 3 Improved GGCGAATAT|GGCGAATAT
90 302546 S.propinquum GGCGAATAT|GGCGAATAT
91 31 Improved GGCGAATAT|GGCGAATAT
92 32 Improved GGCGAATAT|GGCGAATAT
93 34 Improved GGCGAATAT|GGCGAATAT
94 346 Landrace GGCGAATAT|GGCGAATAT
95 348 Wild sorghum GGCGAATAT|GGCGAATAT
96 353 Wild sorghum GGCGAATAT|GGCGAATAT
97 355 Wild sorghum GGCGAATAT|GGCGAATAT
98 357 Wild sorghum GGCGAATAT|GGCGAATAT
99 364 Wild sorghum GGCGAATAT|GGCGAATAT
100 367 Landrace GGCGAATAT|GGCGAATAT
101 s37 S.propinquum GGCGAATAT|GGCGAATAT
102 s38 S.propinquum GGCGAATAT|GGCGAATAT
103 370 Landrace GGCGAATAT|GGCGAATAT
104 377 Wild sorghum GGCGAATAT|GGCGAATAT
105 392 Wild sorghum GGCGAATAT|GGCGAATAT
106 394 Wild sorghum GGCGAATAT|GGCGAATAT
107 40 Improved GGCGAATAT|GGCGAATAT
108 42 Improved GGCGAATAT|GGCGAATAT
109 43 Improved GGCGAATAT|GGCGAATAT
110 45 Improved GGCGAATAT|GGCGAATAT
111 47 Improved GGCGAATAT|GGCGAATAT
112 48 Improved GGCGAATAT|GGCGAATAT
113 51 Improved GGCGAATAT|GGCGAATAT
114 53 Improved GGCGAATAT|GGCGAATAT
115 56 Improved GGCGAATAT|GGCGAATAT
116 61 Improved GGCGAATAT|GGCGAATAT
117 62 Improved GGCGAATAT|GGCGAATAT
118 66 Landrace GGCGAATAT|G
119 67 Improved GGCGAATAT|GGCGAATAT
120 68 Improved GGCGAATAT|GGCGAATAT
121 70 Improved GGCGAATAT|G
122 73 Improved GGCGAATAT|GGCGAATAT
123 75 Improved GGCGAATAT|GGCGAATAT
124 88 Improved GGCGAATAT|GGCGAATAT
125 89 Improved GGCGAATAT|GGCGAATAT
126 91 Improved GGCGAATAT|GGCGAATAT
127 92 Improved GGCGAATAT|GGCGAATAT
128 93 Improved GGCGAATAT|GGCGAATAT
129 94 Improved GGCGAATAT|GGCGAATAT
130 95 Improved GGCGAATAT|GGCGAATAT
131 96 Improved GGCGAATAT|GGCGAATAT
132 97 Improved GGCGAATAT|GGCGAATAT
133 s1 Improved GGCGAATAT|GGCGAATAT
134 s36 Wild sorghum GGCGAATAT|GGCGAATAT
135 s2 Landrace GGCGAATAT|GGCGAATAT
136 s3 Improved GGCGAATAT|GGCGAATAT
137 s32 Improved GGCGAATAT|GGCGAATAT
138 s43 Weedy GGCGAATAT|GGCGAATAT
139 s40 Landrace GGCGAATAT|GGCGAATAT
140 s41 Weedy GGCGAATAT|GGCGAATAT
141 s39 Landrace GGCGAATAT|GGCGAATAT
142 s42 Landrace GGCGAATAT|GGCGAATAT
143 s47 Improved GGCGAATAT|GGCGAATAT
144 s5 Landrace GGCGAATAT|GGCGAATAT
145 GW102 Landrace GGCGAATAT|GGCGAATAT
146 GW103 Landrace GGCGAATAT|GGCGAATAT
147 GW104 Landrace GGCGAATAT|GGCGAATAT
148 GW105 Landrace GGCGAATAT|GGCGAATAT
149 GW16 Landrace GGCGAATAT|GGCGAATAT
150 GW2 Landrace GGCGAATAT|GGCGAATAT
151 GW34 Landrace GGCGAATAT|GGCGAATAT
152 GW37 Landrace GGCGAATAT|GGCGAATAT
153 GW58 Landrace GGCGAATAT|GGCGAATAT
154 GW59 Landrace GGCGAATAT|GGCGAATAT
155 GW9 Landrace GGCGAATAT|GGCGAATAT
156 s4 Weedy GGCGAATAT|GGCGAATAT
157 s6 Improved GGCGAATAT|GGCGAATAT
158 s7 Landrace GGCGAATAT|GGCGAATAT
159 s8 Landrace GGCGAATAT|GGCGAATAT
160 s9 Landrace GGCGAATAT|GGCGAATAT
161 J101 Landrace GGCGAATAT|GGCGAATAT
162 J103 Improved GGCGAATAT|GGCGAATAT
163 J112 Landrace GGCGAATAT|GGCGAATAT
164 J113 Improved GGCGAATAT|GGCGAATAT
165 J129 Improved GGCGAATAT|GGCGAATAT
166 J130 Improved GGCGAATAT|GGCGAATAT
167 J136 Improved GGCGAATAT|GGCGAATAT
168 J152 Improved GGCGAATAT|GGCGAATAT
169 J2 Landrace GGCGAATAT|GGCGAATAT
170 J20 Landrace GGCGAATAT|GGCGAATAT
171 J4 Landrace GGCGAATAT|GGCGAATAT
172 J42 Landrace GGCGAATAT|GGCGAATAT
173 J44 Landrace GGCGAATAT|GGCGAATAT
174 J49 Landrace N|N
175 J52 Landrace GGCGAATAT|GGCGAATAT
176 J53 Landrace GGCGAATAT|GGCGAATAT
177 J54 Landrace GGCGAATAT|GGCGAATAT
178 J57 Landrace GGCGAATAT|GGCGAATAT
179 J59 Landrace GGCGAATAT|GGCGAATAT
180 J64 Landrace GGCGAATAT|GGCGAATAT
181 J66 Landrace GGCGAATAT|GGCGAATAT
182 J67 Landrace GGCGAATAT|GGCGAATAT
183 J69 Landrace GGCGAATAT|GGCGAATAT
184 J87 Landrace GGCGAATAT|GGCGAATAT
185 J99 Landrace GGCGAATAT|GGCGAATAT
186 s45 Landrace GGCGAATAT|GGCGAATAT
187 s11 Improved GGCGAATAT|GGCGAATAT
188 s10 Improved GGCGAATAT|GGCGAATAT
189 s46 Improved GGCGAATAT|GGCGAATAT
190 s12 Improved GGCGAATAT|GGCGAATAT
191 s13 Landrace GGCGAATAT|GGCGAATAT
192 MHMD Landrace GGCGAATAT|GGCGAATAT
193 s14 Improved GGCGAATAT|GGCGAATAT
194 s15 Improved GGCGAATAT|GGCGAATAT
195 s34 Weedy GGCGAATAT|GGCGAATAT
196 s33 Wild sorghum GGCGAATAT|GGCGAATAT
197 s21 Wild sorghum GGCGAATAT|GGCGAATAT
198 s16 Wild sorghum GGCGAATAT|GGCGAATAT
199 s44 Improved GGCGAATAT|GGCGAATAT
200 s35 Landrace GGCGAATAT|GGCGAATAT
201 s31 Wild sorghum GGCGAATAT|GGCGAATAT
202 s17 Improved GGCGAATAT|GGCGAATAT
203 s18 Improved GGCGAATAT|GGCGAATAT
204 s20 Improved GGCGAATAT|GGCGAATAT
205 s19 Improved GGCGAATAT|GGCGAATAT
206 s22 Landrace GGCGAATAT|GGCGAATAT
207 s23 Landrace GGCGAATAT|GGCGAATAT
208 s24 Landrace GGCGAATAT|GGCGAATAT
209 s25 Landrace GGCGAATAT|GGCGAATAT
210 s26 Landrace GGCGAATAT|GGCGAATAT
211 s27 Landrace GGCGAATAT|GGCGAATAT
212 s28 Landrace GGCGAATAT|GGCGAATAT
213 s29 Landrace GGCGAATAT|GGCGAATAT
214 s30 Landrace GGCGAATAT|GGCGAATAT
215 SL25 Wild sorghum GGCGAATAT|GGCGAATAT
216 SL105 Wild sorghum GGCGAATAT|GGCGAATAT
217 SL108 Wild sorghum GGCGAATAT|GGCGAATAT
218 SL109 Wild sorghum GGCGAATAT|GGCGAATAT
219 SL12 Wild sorghum GGCGAATAT|GGCGAATAT
220 SL129 Wild sorghum GGCGAATAT|GGCGAATAT
221 SL130 Wild sorghum GGCGAATAT|GGCGAATAT
222 SL135 Wild sorghum GGCGAATAT|GGCGAATAT
223 SL136 Wild sorghum GGCGAATAT|GGCGAATAT
224 SL137 Wild sorghum GGCGAATAT|GGCGAATAT
225 SL138 Wild sorghum GGCGAATAT|GGCGAATAT
226 SL140 Wild sorghum GGCGAATAT|GGCGAATAT
227 SL141 Wild sorghum GGCGAATAT|GGCGAATAT
228 SL19 Wild sorghum GGCGAATAT|GGCGAATAT
229 SL28 Wild sorghum GGCGAATAT|GGCGAATAT
230 SL32 Wild sorghum GGCGAATAT|GGCGAATAT
231 SL35 Wild sorghum GGCGAATAT|GGCGAATAT
232 SL36 Wild sorghum GGCGAATAT|GGCGAATAT
233 SL37 Wild sorghum GGCGAATAT|GGCGAATAT
234 SL39 Wild sorghum GGCGAATAT|GGCGAATAT
235 SL41 Wild sorghum GGCGAATAT|GGCGAATAT
236 SL43 Wild sorghum GGCGAATAT|GGCGAATAT
237 SL47 Wild sorghum GGCGAATAT|GGCGAATAT
238 SL49 Wild sorghum GGCGAATAT|GGCGAATAT
239 SL51 Wild sorghum GGCGAATAT|GGCGAATAT
240 SL53 Wild sorghum GGCGAATAT|GGCGAATAT
241 SL62 Wild sorghum GGCGAATAT|GGCGAATAT
242 SL83 Wild sorghum GGCGAATAT|GGCGAATAT
243 SL97 Landrace GGCGAATAT|GGCGAATAT
244 s48 Improved GGCGAATAT|GGCGAATAT
245 Tu13 Wild sorghum GGCGAATAT|GGCGAATAT
246 Tu14 Wild sorghum GGCGAATAT|GGCGAATAT
247 Tu30 Wild sorghum GGCGAATAT|GGCGAATAT
248 Tu5 Wild sorghum GGCGAATAT|GGCGAATAT
249 WSC5 Landrace GGCGAATAT|GGCGAATAT
250 WSC15 Landrace N|N
251 WSC19 Landrace GGCGAATAT|GGCGAATAT
252 WSC30 Landrace GGCGAATAT|GGCGAATAT
253 WSC52 Landrace GGCGAATAT|G
254 WSC6 Landrace GGCGAATAT|GGCGAATAT
255 WSC61 Landrace GGCGAATAT|GGCGAATAT
256 WSC71 Improved GGCGAATAT|GGCGAATAT
257 WSC72 Landrace GGCGAATAT|GGCGAATAT
258 WSC79 Landrace GGCGAATAT|GGCGAATAT
259 WSC94 Landrace GGCGAATAT|GGCGAATAT
260 WSC99 Landrace GGCGAATAT|GGCGAATAT
261 WSC100 Landrace N|N
262 WSC104 Landrace GGCGAATAT|GGCGAATAT
263 WSC105 Landrace GGCGAATAT|GGCGAATAT
264 WSC12 Landrace GGCGAATAT|GGCGAATAT
265 WSC13 Landrace N|N
266 WSC16 Landrace GGCGAATAT|GGCGAATAT
267 WSC17 Landrace GGCGAATAT|GGCGAATAT
268 WSC18 Landrace GGCGAATAT|GGCGAATAT
269 WSC20 Landrace N|N
270 WSC24 Landrace GGCGAATAT|GGCGAATAT
271 WSC25 Landrace GGCGAATAT|GGCGAATAT
272 WSC29 Landrace GGCGAATAT|G
273 WSC31 Landrace GGCGAATAT|G
274 WSC32 Landrace GGCGAATAT|GGCGAATAT
275 WSC34 Landrace GGCGAATAT|GGCGAATAT
276 WSC38 Landrace GGCGAATAT|GGCGAATAT
277 WSC39 Improved GGCGAATAT|G
278 WSC40 Landrace GGCGAATAT|G
279 WSC54 Landrace GGCGAATAT|GGCGAATAT
280 WSC56 Landrace GGCGAATAT|GGCGAATAT
281 WSC59 Landrace GGCGAATAT|GGCGAATAT
282 WSC68 Landrace GGCGAATAT|GGCGAATAT
283 WSC70 Landrace GGCGAATAT|GGCGAATAT
284 WSC73 Landrace GGCGAATAT|GGCGAATAT
285 WSC81 Landrace GGCGAATAT|GGCGAATAT
286 WSC85 Improved GGCGAATAT|GGCGAATAT
287 WSC91 Landrace GGCGAATAT|GGCGAATAT
288 WSC93 Landrace GGCGAATAT|GGCGAATAT
289 WSC98 Landrace GGCGAATAT|GGCGAATAT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825374 Sobic.001G000200 3_prime UTR variant |MODIFIER Sobic.001G000200.1 mRNA 1744 Sobic.001G000200.1.p

Genome Browser