sorgsd

Variation ID : sbi33825377

Variation Detail

Variation ID	sbi33825377
Type	INDEL
Position	Chr01 11594-11599
Ref /Alleles	GCAAAT/ G
MAF	G: 0.004
5' Flank	TTAGCAGGCAACTAGGAGTAGTAAAGTAAC
3' Flank	CCCCACTTATAAAAAGATAAAGAGGAAACT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GCAAAT\|GCAAAT
2	103	Improved	GCAAAT\|GCAAAT
3	107	Improved	GCAAAT\|GCAAAT
4	11	Improved	GCAAAT\|GCAAAT
5	110	Improved	GCAAAT\|GCAAAT
6	123	Landrace	GCAAAT\|GCAAAT
7	131	Improved	GCAAAT\|GCAAAT
8	132	Improved	GCAAAT\|GCAAAT
9	135	Improved	GCAAAT\|GCAAAT
10	137	Improved	GCAAAT\|GCAAAT
11	138	Improved	GCAAAT\|GCAAAT
12	14	Improved	GCAAAT\|GCAAAT
13	140	Improved	GCAAAT\|GCAAAT
14	141	Improved	GCAAAT\|GCAAAT
15	144	Improved	GCAAAT\|GCAAAT
16	150	Improved	GCAAAT\|GCAAAT
17	154	Improved	GCAAAT\|GCAAAT
18	159	Landrace	GCAAAT\|GCAAAT
19	16	Improved	GCAAAT\|GCAAAT
20	161	Landrace	GCAAAT\|GCAAAT
21	167	Improved	GCAAAT\|GCAAAT
22	168	Improved	GCAAAT\|GCAAAT
23	170	Improved	GCAAAT\|GCAAAT
24	173	Improved	GCAAAT\|GCAAAT
25	175	Improved	GCAAAT\|GCAAAT
26	176	Improved	GCAAAT\|GCAAAT
27	182	Landrace	GCAAAT\|GCAAAT
28	186	Improved	GCAAAT\|GCAAAT
29	190	Improved	GCAAAT\|GCAAAT
30	192	Improved	GCAAAT\|GCAAAT
31	194	Improved	GCAAAT\|GCAAAT
32	195	Improved	GCAAAT\|GCAAAT
33	197	Improved	GCAAAT\|GCAAAT
34	J22	Landrace	GCAAAT\|GCAAAT
35	J26	Landrace	N\|N
36	J5	Landrace	GCAAAT\|GCAAAT
37	J50	Landrace	GCAAAT\|GCAAAT
38	2001	Landrace	GCAAAT\|GCAAAT
39	2005	Improved	GCAAAT\|GCAAAT
40	2008	Improved	GCAAAT\|GCAAAT
41	2009	Landrace	GCAAAT\|GCAAAT
42	201	Improved	GCAAAT\|GCAAAT
43	2010	Landrace	GCAAAT\|GCAAAT
44	2016	Improved	GCAAAT\|GCAAAT
45	2019	Improved	GCAAAT\|GCAAAT
46	202	Improved	GCAAAT\|GCAAAT
47	2021	Improved	GCAAAT\|GCAAAT
48	2023	Improved	GCAAAT\|GCAAAT
49	2026	Improved	GCAAAT\|GCAAAT
50	2029	Improved	GCAAAT\|GCAAAT
51	2030	Landrace	GCAAAT\|GCAAAT
52	2031	Landrace	GCAAAT\|GCAAAT
53	2036	Improved	GCAAAT\|GCAAAT
54	2037	Improved	GCAAAT\|GCAAAT
55	2038	Improved	GCAAAT\|GCAAAT
56	2039	Improved	GCAAAT\|GCAAAT
57	204	Improved	GCAAAT\|GCAAAT
58	2042	Improved	GCAAAT\|GCAAAT
59	2043	Improved	GCAAAT\|GCAAAT
60	2048	Improved	GCAAAT\|GCAAAT
61	2049	Improved	GCAAAT\|GCAAAT
62	205	Improved	GCAAAT\|GCAAAT
63	2050	Improved	GCAAAT\|GCAAAT
64	2052	Improved	GCAAAT\|GCAAAT
65	2054	Improved	GCAAAT\|GCAAAT
66	2056	Improved	GCAAAT\|GCAAAT
67	2059	Improved	GCAAAT\|GCAAAT
68	206	Improved	GCAAAT\|GCAAAT
69	2064	Improved	GCAAAT\|GCAAAT
70	2065	Improved	GCAAAT\|GCAAAT
71	2067	Improved	GCAAAT\|GCAAAT
72	2068	Improved	GCAAAT\|GCAAAT
73	2069	Improved	GCAAAT\|GCAAAT
74	2071	Improved	GCAAAT\|GCAAAT
75	2074	Improved	GCAAAT\|GCAAAT
76	2075	Improved	GCAAAT\|GCAAAT
77	2076	Improved	GCAAAT\|GCAAAT
78	2080	Improved	GCAAAT\|GCAAAT
79	2081	Improved	N\|N
80	2082	Improved	GCAAAT\|GCAAAT
81	2086	Improved	GCAAAT\|GCAAAT
82	2088	Improved	GCAAAT\|GCAAAT
83	260	Wild sorghum	GCAAAT\|GCAAAT
84	261	Improved	GCAAAT\|GCAAAT
85	262	Improved	GCAAAT\|GCAAAT
86	263	Improved	GCAAAT\|GCAAAT
87	286	Improved	GCAAAT\|GCAAAT
88	29	Improved	GCAAAT\|GCAAAT
89	3	Improved	GCAAAT\|GCAAAT
90	302546	S.propinquum	GCAAAT\|GCAAAT
91	31	Improved	GCAAAT\|GCAAAT
92	32	Improved	GCAAAT\|GCAAAT
93	34	Improved	GCAAAT\|GCAAAT
94	346	Landrace	GCAAAT\|GCAAAT
95	348	Wild sorghum	GCAAAT\|GCAAAT
96	353	Wild sorghum	GCAAAT\|GCAAAT
97	355	Wild sorghum	GCAAAT\|GCAAAT
98	357	Wild sorghum	GCAAAT\|GCAAAT
99	364	Wild sorghum	GCAAAT\|GCAAAT
100	367	Landrace	GCAAAT\|GCAAAT
101	s37	S.propinquum	GCAAAT\|GCAAAT
102	s38	S.propinquum	GCAAAT\|GCAAAT
103	370	Landrace	GCAAAT\|GCAAAT
104	377	Wild sorghum	GCAAAT\|GCAAAT
105	392	Wild sorghum	GCAAAT\|GCAAAT
106	394	Wild sorghum	GCAAAT\|GCAAAT
107	40	Improved	GCAAAT\|GCAAAT
108	42	Improved	GCAAAT\|GCAAAT
109	43	Improved	GCAAAT\|GCAAAT
110	45	Improved	GCAAAT\|GCAAAT
111	47	Improved	GCAAAT\|GCAAAT
112	48	Improved	GCAAAT\|GCAAAT
113	51	Improved	GCAAAT\|GCAAAT
114	53	Improved	GCAAAT\|GCAAAT
115	56	Improved	GCAAAT\|GCAAAT
116	61	Improved	GCAAAT\|GCAAAT
117	62	Improved	GCAAAT\|GCAAAT
118	66	Landrace	N\|N
119	67	Improved	GCAAAT\|GCAAAT
120	68	Improved	GCAAAT\|GCAAAT
121	70	Improved	GCAAAT\|GCAAAT
122	73	Improved	GCAAAT\|GCAAAT
123	75	Improved	GCAAAT\|GCAAAT
124	88	Improved	GCAAAT\|GCAAAT
125	89	Improved	GCAAAT\|GCAAAT
126	91	Improved	GCAAAT\|GCAAAT
127	92	Improved	GCAAAT\|GCAAAT
128	93	Improved	GCAAAT\|GCAAAT
129	94	Improved	GCAAAT\|GCAAAT
130	95	Improved	GCAAAT\|GCAAAT
131	96	Improved	GCAAAT\|GCAAAT
132	97	Improved	GCAAAT\|GCAAAT
133	s1	Improved	GCAAAT\|GCAAAT
134	s36	Wild sorghum	GCAAAT\|GCAAAT
135	s2	Landrace	GCAAAT\|GCAAAT
136	s3	Improved	GCAAAT\|GCAAAT
137	s32	Improved	GCAAAT\|GCAAAT
138	s43	Weedy	GCAAAT\|GCAAAT
139	s40	Landrace	GCAAAT\|GCAAAT
140	s41	Weedy	GCAAAT\|GCAAAT
141	s39	Landrace	GCAAAT\|GCAAAT
142	s42	Landrace	GCAAAT\|GCAAAT
143	s47	Improved	GCAAAT\|GCAAAT
144	s5	Landrace	GCAAAT\|GCAAAT
145	GW102	Landrace	GCAAAT\|GCAAAT
146	GW103	Landrace	GCAAAT\|GCAAAT
147	GW104	Landrace	GCAAAT\|GCAAAT
148	GW105	Landrace	GCAAAT\|GCAAAT
149	GW16	Landrace	GCAAAT\|GCAAAT
150	GW2	Landrace	GCAAAT\|GCAAAT
151	GW34	Landrace	GCAAAT\|GCAAAT
152	GW37	Landrace	GCAAAT\|GCAAAT
153	GW58	Landrace	GCAAAT\|GCAAAT
154	GW59	Landrace	GCAAAT\|GCAAAT
155	GW9	Landrace	GCAAAT\|GCAAAT
156	s4	Weedy	GCAAAT\|GCAAAT
157	s6	Improved	GCAAAT\|GCAAAT
158	s7	Landrace	GCAAAT\|GCAAAT
159	s8	Landrace	GCAAAT\|GCAAAT
160	s9	Landrace	GCAAAT\|GCAAAT
161	J101	Landrace	GCAAAT\|GCAAAT
162	J103	Improved	GCAAAT\|GCAAAT
163	J112	Landrace	GCAAAT\|GCAAAT
164	J113	Improved	GCAAAT\|GCAAAT
165	J129	Improved	GCAAAT\|GCAAAT
166	J130	Improved	GCAAAT\|GCAAAT
167	J136	Improved	GCAAAT\|GCAAAT
168	J152	Improved	GCAAAT\|GCAAAT
169	J2	Landrace	GCAAAT\|GCAAAT
170	J20	Landrace	GCAAAT\|GCAAAT
171	J4	Landrace	GCAAAT\|GCAAAT
172	J42	Landrace	GCAAAT\|GCAAAT
173	J44	Landrace	GCAAAT\|GCAAAT
174	J49	Landrace	GCAAAT\|GCAAAT
175	J52	Landrace	GCAAAT\|GCAAAT
176	J53	Landrace	GCAAAT\|GCAAAT
177	J54	Landrace	GCAAAT\|GCAAAT
178	J57	Landrace	GCAAAT\|GCAAAT
179	J59	Landrace	GCAAAT\|GCAAAT
180	J64	Landrace	GCAAAT\|GCAAAT
181	J66	Landrace	GCAAAT\|GCAAAT
182	J67	Landrace	GCAAAT\|GCAAAT
183	J69	Landrace	GCAAAT\|GCAAAT
184	J87	Landrace	GCAAAT\|GCAAAT
185	J99	Landrace	GCAAAT\|GCAAAT
186	s45	Landrace	GCAAAT\|GCAAAT
187	s11	Improved	GCAAAT\|GCAAAT
188	s10	Improved	GCAAAT\|GCAAAT
189	s46	Improved	GCAAAT\|GCAAAT
190	s12	Improved	GCAAAT\|GCAAAT
191	s13	Landrace	GCAAAT\|GCAAAT
192	MHMD	Landrace	GCAAAT\|GCAAAT
193	s14	Improved	GCAAAT\|GCAAAT
194	s15	Improved	GCAAAT\|GCAAAT
195	s34	Weedy	GCAAAT\|GCAAAT
196	s33	Wild sorghum	GCAAAT\|GCAAAT
197	s21	Wild sorghum	GCAAAT\|GCAAAT
198	s16	Wild sorghum	GCAAAT\|GCAAAT
199	s44	Improved	GCAAAT\|GCAAAT
200	s35	Landrace	GCAAAT\|GCAAAT
201	s31	Wild sorghum	GCAAAT\|GCAAAT
202	s17	Improved	GCAAAT\|GCAAAT
203	s18	Improved	GCAAAT\|GCAAAT
204	s20	Improved	GCAAAT\|GCAAAT
205	s19	Improved	GCAAAT\|GCAAAT
206	s22	Landrace	GCAAAT\|GCAAAT
207	s23	Landrace	GCAAAT\|GCAAAT
208	s24	Landrace	GCAAAT\|GCAAAT
209	s25	Landrace	GCAAAT\|GCAAAT
210	s26	Landrace	GCAAAT\|GCAAAT
211	s27	Landrace	GCAAAT\|GCAAAT
212	s28	Landrace	GCAAAT\|GCAAAT
213	s29	Landrace	GCAAAT\|GCAAAT
214	s30	Landrace	GCAAAT\|GCAAAT
215	SL25	Wild sorghum	GCAAAT\|GCAAAT
216	SL105	Wild sorghum	GCAAAT\|GCAAAT
217	SL108	Wild sorghum	GCAAAT\|GCAAAT
218	SL109	Wild sorghum	G\|G
219	SL12	Wild sorghum	GCAAAT\|GCAAAT
220	SL129	Wild sorghum	GCAAAT\|GCAAAT
221	SL130	Wild sorghum	GCAAAT\|GCAAAT
222	SL135	Wild sorghum	GCAAAT\|GCAAAT
223	SL136	Wild sorghum	GCAAAT\|GCAAAT
224	SL137	Wild sorghum	GCAAAT\|GCAAAT
225	SL138	Wild sorghum	GCAAAT\|GCAAAT
226	SL140	Wild sorghum	GCAAAT\|GCAAAT
227	SL141	Wild sorghum	GCAAAT\|GCAAAT
228	SL19	Wild sorghum	GCAAAT\|GCAAAT
229	SL28	Wild sorghum	GCAAAT\|GCAAAT
230	SL32	Wild sorghum	GCAAAT\|GCAAAT
231	SL35	Wild sorghum	GCAAAT\|GCAAAT
232	SL36	Wild sorghum	GCAAAT\|GCAAAT
233	SL37	Wild sorghum	GCAAAT\|GCAAAT
234	SL39	Wild sorghum	GCAAAT\|GCAAAT
235	SL41	Wild sorghum	GCAAAT\|GCAAAT
236	SL43	Wild sorghum	GCAAAT\|GCAAAT
237	SL47	Wild sorghum	GCAAAT\|GCAAAT
238	SL49	Wild sorghum	GCAAAT\|GCAAAT
239	SL51	Wild sorghum	GCAAAT\|GCAAAT
240	SL53	Wild sorghum	GCAAAT\|GCAAAT
241	SL62	Wild sorghum	GCAAAT\|GCAAAT
242	SL83	Wild sorghum	GCAAAT\|GCAAAT
243	SL97	Landrace	GCAAAT\|GCAAAT
244	s48	Improved	GCAAAT\|GCAAAT
245	Tu13	Wild sorghum	GCAAAT\|GCAAAT
246	Tu14	Wild sorghum	GCAAAT\|GCAAAT
247	Tu30	Wild sorghum	GCAAAT\|GCAAAT
248	Tu5	Wild sorghum	GCAAAT\|GCAAAT
249	WSC5	Landrace	GCAAAT\|GCAAAT
250	WSC15	Landrace	GCAAAT\|GCAAAT
251	WSC19	Landrace	GCAAAT\|GCAAAT
252	WSC30	Landrace	GCAAAT\|GCAAAT
253	WSC52	Landrace	GCAAAT\|GCAAAT
254	WSC6	Landrace	GCAAAT\|GCAAAT
255	WSC61	Landrace	GCAAAT\|GCAAAT
256	WSC71	Improved	GCAAAT\|GCAAAT
257	WSC72	Landrace	GCAAAT\|GCAAAT
258	WSC79	Landrace	GCAAAT\|GCAAAT
259	WSC94	Landrace	GCAAAT\|GCAAAT
260	WSC99	Landrace	GCAAAT\|GCAAAT
261	WSC100	Landrace	N\|N
262	WSC104	Landrace	GCAAAT\|GCAAAT
263	WSC105	Landrace	GCAAAT\|GCAAAT
264	WSC12	Landrace	GCAAAT\|GCAAAT
265	WSC13	Landrace	GCAAAT\|GCAAAT
266	WSC16	Landrace	GCAAAT\|GCAAAT
267	WSC17	Landrace	GCAAAT\|GCAAAT
268	WSC18	Landrace	GCAAAT\|GCAAAT
269	WSC20	Landrace	GCAAAT\|GCAAAT
270	WSC24	Landrace	GCAAAT\|GCAAAT
271	WSC25	Landrace	GCAAAT\|GCAAAT
272	WSC29	Landrace	GCAAAT\|GCAAAT
273	WSC31	Landrace	GCAAAT\|GCAAAT
274	WSC32	Landrace	GCAAAT\|GCAAAT
275	WSC34	Landrace	GCAAAT\|GCAAAT
276	WSC38	Landrace	GCAAAT\|GCAAAT
277	WSC39	Improved	GCAAAT\|GCAAAT
278	WSC40	Landrace	GCAAAT\|GCAAAT
279	WSC54	Landrace	GCAAAT\|GCAAAT
280	WSC56	Landrace	GCAAAT\|GCAAAT
281	WSC59	Landrace	GCAAAT\|GCAAAT
282	WSC68	Landrace	GCAAAT\|GCAAAT
283	WSC70	Landrace	GCAAAT\|GCAAAT
284	WSC73	Landrace	GCAAAT\|GCAAAT
285	WSC81	Landrace	GCAAAT\|GCAAAT
286	WSC85	Improved	GCAAAT\|GCAAAT
287	WSC91	Landrace	GCAAAT\|GCAAAT
288	WSC93	Landrace	GCAAAT\|GCAAAT
289	WSC98	Landrace	GCAAAT\|GCAAAT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825377	Sobic.001G000200	intron variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

Genome Browser