Variation ID : sbi33825386

Variation Detail



Variation ID sbi33825386
Type INDEL
Position Chr01 13421-13424
Ref /Alleles AAGG/ A
MAF A: 0.004
5' Flank ACATCAAGGCCTACCATGCAGCAGTTATGT
3' Flank AGGAGAAAATAATGGCAGACAGTGGCGAAG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved AAGG|AAGG
2 103 Improved AAGG|AAGG
3 107 Improved AAGG|AAGG
4 11 Improved AAGG|AAGG
5 110 Improved AAGG|AAGG
6 123 Landrace AAGG|AAGG
7 131 Improved AAGG|AAGG
8 132 Improved AAGG|AAGG
9 135 Improved AAGG|AAGG
10 137 Improved AAGG|AAGG
11 138 Improved AAGG|AAGG
12 14 Improved AAGG|AAGG
13 140 Improved AAGG|AAGG
14 141 Improved AAGG|AAGG
15 144 Improved AAGG|AAGG
16 150 Improved AAGG|AAGG
17 154 Improved AAGG|AAGG
18 159 Landrace AAGG|AAGG
19 16 Improved AAGG|AAGG
20 161 Landrace AAGG|AAGG
21 167 Improved AAGG|AAGG
22 168 Improved AAGG|AAGG
23 170 Improved AAGG|AAGG
24 173 Improved AAGG|AAGG
25 175 Improved AAGG|AAGG
26 176 Improved AAGG|AAGG
27 182 Landrace A|A
28 186 Improved AAGG|AAGG
29 190 Improved AAGG|AAGG
30 192 Improved AAGG|AAGG
31 194 Improved AAGG|AAGG
32 195 Improved AAGG|AAGG
33 197 Improved AAGG|AAGG
34 J22 Landrace AAGG|AAGG
35 J26 Landrace AAGG|AAGG
36 J5 Landrace AAGG|AAGG
37 J50 Landrace AAGG|AAGG
38 2001 Landrace AAGG|AAGG
39 2005 Improved AAGG|AAGG
40 2008 Improved N|N
41 2009 Landrace AAGG|AAGG
42 201 Improved AAGG|AAGG
43 2010 Landrace AAGG|AAGG
44 2016 Improved AAGG|AAGG
45 2019 Improved AAGG|AAGG
46 202 Improved AAGG|AAGG
47 2021 Improved AAGG|AAGG
48 2023 Improved AAGG|AAGG
49 2026 Improved AAGG|AAGG
50 2029 Improved AAGG|AAGG
51 2030 Landrace AAGG|AAGG
52 2031 Landrace AAGG|AAGG
53 2036 Improved AAGG|AAGG
54 2037 Improved AAGG|AAGG
55 2038 Improved AAGG|AAGG
56 2039 Improved AAGG|AAGG
57 204 Improved AAGG|AAGG
58 2042 Improved AAGG|AAGG
59 2043 Improved AAGG|AAGG
60 2048 Improved AAGG|AAGG
61 2049 Improved AAGG|AAGG
62 205 Improved AAGG|AAGG
63 2050 Improved AAGG|AAGG
64 2052 Improved AAGG|AAGG
65 2054 Improved AAGG|AAGG
66 2056 Improved AAGG|AAGG
67 2059 Improved AAGG|AAGG
68 206 Improved AAGG|AAGG
69 2064 Improved AAGG|AAGG
70 2065 Improved AAGG|AAGG
71 2067 Improved AAGG|AAGG
72 2068 Improved AAGG|AAGG
73 2069 Improved AAGG|AAGG
74 2071 Improved AAGG|AAGG
75 2074 Improved AAGG|AAGG
76 2075 Improved AAGG|AAGG
77 2076 Improved AAGG|AAGG
78 2080 Improved AAGG|AAGG
79 2081 Improved AAGG|AAGG
80 2082 Improved AAGG|AAGG
81 2086 Improved AAGG|AAGG
82 2088 Improved AAGG|AAGG
83 260 Wild sorghum AAGG|AAGG
84 261 Improved N|N
85 262 Improved AAGG|AAGG
86 263 Improved AAGG|AAGG
87 286 Improved AAGG|AAGG
88 29 Improved AAGG|AAGG
89 3 Improved AAGG|AAGG
90 302546 S.propinquum AAGG|AAGG
91 31 Improved AAGG|AAGG
92 32 Improved AAGG|AAGG
93 34 Improved AAGG|AAGG
94 346 Landrace AAGG|AAGG
95 348 Wild sorghum AAGG|AAGG
96 353 Wild sorghum AAGG|AAGG
97 355 Wild sorghum AAGG|AAGG
98 357 Wild sorghum AAGG|AAGG
99 364 Wild sorghum AAGG|AAGG
100 367 Landrace AAGG|AAGG
101 s37 S.propinquum AAGG|AAGG
102 s38 S.propinquum AAGG|AAGG
103 370 Landrace AAGG|AAGG
104 377 Wild sorghum AAGG|AAGG
105 392 Wild sorghum AAGG|AAGG
106 394 Wild sorghum AAGG|AAGG
107 40 Improved AAGG|AAGG
108 42 Improved AAGG|AAGG
109 43 Improved AAGG|AAGG
110 45 Improved AAGG|AAGG
111 47 Improved N|N
112 48 Improved AAGG|AAGG
113 51 Improved AAGG|AAGG
114 53 Improved AAGG|AAGG
115 56 Improved AAGG|AAGG
116 61 Improved AAGG|AAGG
117 62 Improved AAGG|AAGG
118 66 Landrace AAGG|AAGG
119 67 Improved AAGG|AAGG
120 68 Improved AAGG|AAGG
121 70 Improved AAGG|AAGG
122 73 Improved AAGG|AAGG
123 75 Improved AAGG|AAGG
124 88 Improved AAGG|AAGG
125 89 Improved AAGG|AAGG
126 91 Improved AAGG|AAGG
127 92 Improved AAGG|AAGG
128 93 Improved AAGG|AAGG
129 94 Improved AAGG|AAGG
130 95 Improved AAGG|AAGG
131 96 Improved AAGG|AAGG
132 97 Improved AAGG|AAGG
133 s1 Improved AAGG|AAGG
134 s36 Wild sorghum AAGG|AAGG
135 s2 Landrace AAGG|AAGG
136 s3 Improved AAGG|AAGG
137 s32 Improved AAGG|AAGG
138 s43 Weedy AAGG|AAGG
139 s40 Landrace AAGG|AAGG
140 s41 Weedy AAGG|AAGG
141 s39 Landrace AAGG|AAGG
142 s42 Landrace AAGG|AAGG
143 s47 Improved AAGG|AAGG
144 s5 Landrace AAGG|AAGG
145 GW102 Landrace AAGG|AAGG
146 GW103 Landrace AAGG|AAGG
147 GW104 Landrace AAGG|AAGG
148 GW105 Landrace AAGG|AAGG
149 GW16 Landrace AAGG|AAGG
150 GW2 Landrace AAGG|AAGG
151 GW34 Landrace AAGG|AAGG
152 GW37 Landrace AAGG|AAGG
153 GW58 Landrace AAGG|AAGG
154 GW59 Landrace AAGG|AAGG
155 GW9 Landrace AAGG|AAGG
156 s4 Weedy AAGG|AAGG
157 s6 Improved AAGG|AAGG
158 s7 Landrace AAGG|AAGG
159 s8 Landrace AAGG|AAGG
160 s9 Landrace AAGG|AAGG
161 J101 Landrace AAGG|AAGG
162 J103 Improved AAGG|AAGG
163 J112 Landrace AAGG|AAGG
164 J113 Improved AAGG|AAGG
165 J129 Improved AAGG|AAGG
166 J130 Improved AAGG|AAGG
167 J136 Improved AAGG|AAGG
168 J152 Improved AAGG|AAGG
169 J2 Landrace AAGG|AAGG
170 J20 Landrace AAGG|AAGG
171 J4 Landrace N|N
172 J42 Landrace AAGG|AAGG
173 J44 Landrace AAGG|AAGG
174 J49 Landrace AAGG|AAGG
175 J52 Landrace AAGG|AAGG
176 J53 Landrace AAGG|AAGG
177 J54 Landrace AAGG|AAGG
178 J57 Landrace AAGG|AAGG
179 J59 Landrace AAGG|AAGG
180 J64 Landrace AAGG|AAGG
181 J66 Landrace AAGG|AAGG
182 J67 Landrace AAGG|AAGG
183 J69 Landrace AAGG|AAGG
184 J87 Landrace AAGG|AAGG
185 J99 Landrace AAGG|AAGG
186 s45 Landrace AAGG|AAGG
187 s11 Improved AAGG|AAGG
188 s10 Improved AAGG|AAGG
189 s46 Improved AAGG|AAGG
190 s12 Improved AAGG|AAGG
191 s13 Landrace AAGG|AAGG
192 MHMD Landrace AAGG|AAGG
193 s14 Improved AAGG|AAGG
194 s15 Improved AAGG|AAGG
195 s34 Weedy AAGG|AAGG
196 s33 Wild sorghum AAGG|AAGG
197 s21 Wild sorghum AAGG|AAGG
198 s16 Wild sorghum AAGG|AAGG
199 s44 Improved AAGG|AAGG
200 s35 Landrace AAGG|AAGG
201 s31 Wild sorghum AAGG|AAGG
202 s17 Improved AAGG|AAGG
203 s18 Improved AAGG|AAGG
204 s20 Improved AAGG|AAGG
205 s19 Improved AAGG|AAGG
206 s22 Landrace AAGG|AAGG
207 s23 Landrace AAGG|AAGG
208 s24 Landrace AAGG|AAGG
209 s25 Landrace AAGG|AAGG
210 s26 Landrace AAGG|AAGG
211 s27 Landrace AAGG|AAGG
212 s28 Landrace AAGG|AAGG
213 s29 Landrace AAGG|AAGG
214 s30 Landrace AAGG|AAGG
215 SL25 Wild sorghum AAGG|AAGG
216 SL105 Wild sorghum AAGG|AAGG
217 SL108 Wild sorghum AAGG|AAGG
218 SL109 Wild sorghum AAGG|AAGG
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum AAGG|AAGG
221 SL130 Wild sorghum AAGG|AAGG
222 SL135 Wild sorghum AAGG|AAGG
223 SL136 Wild sorghum AAGG|AAGG
224 SL137 Wild sorghum AAGG|AAGG
225 SL138 Wild sorghum AAGG|AAGG
226 SL140 Wild sorghum AAGG|AAGG
227 SL141 Wild sorghum AAGG|AAGG
228 SL19 Wild sorghum AAGG|AAGG
229 SL28 Wild sorghum AAGG|AAGG
230 SL32 Wild sorghum AAGG|AAGG
231 SL35 Wild sorghum AAGG|AAGG
232 SL36 Wild sorghum AAGG|AAGG
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum AAGG|AAGG
235 SL41 Wild sorghum AAGG|AAGG
236 SL43 Wild sorghum AAGG|AAGG
237 SL47 Wild sorghum AAGG|AAGG
238 SL49 Wild sorghum AAGG|AAGG
239 SL51 Wild sorghum AAGG|AAGG
240 SL53 Wild sorghum AAGG|AAGG
241 SL62 Wild sorghum AAGG|AAGG
242 SL83 Wild sorghum AAGG|AAGG
243 SL97 Landrace AAGG|AAGG
244 s48 Improved AAGG|AAGG
245 Tu13 Wild sorghum AAGG|AAGG
246 Tu14 Wild sorghum AAGG|AAGG
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum AAGG|AAGG
249 WSC5 Landrace AAGG|AAGG
250 WSC15 Landrace AAGG|AAGG
251 WSC19 Landrace AAGG|AAGG
252 WSC30 Landrace AAGG|AAGG
253 WSC52 Landrace AAGG|AAGG
254 WSC6 Landrace AAGG|AAGG
255 WSC61 Landrace AAGG|AAGG
256 WSC71 Improved AAGG|AAGG
257 WSC72 Landrace AAGG|AAGG
258 WSC79 Landrace AAGG|AAGG
259 WSC94 Landrace AAGG|AAGG
260 WSC99 Landrace AAGG|AAGG
261 WSC100 Landrace AAGG|AAGG
262 WSC104 Landrace AAGG|AAGG
263 WSC105 Landrace AAGG|AAGG
264 WSC12 Landrace AAGG|AAGG
265 WSC13 Landrace AAGG|AAGG
266 WSC16 Landrace AAGG|AAGG
267 WSC17 Landrace AAGG|AAGG
268 WSC18 Landrace AAGG|AAGG
269 WSC20 Landrace AAGG|AAGG
270 WSC24 Landrace AAGG|AAGG
271 WSC25 Landrace AAGG|AAGG
272 WSC29 Landrace AAGG|AAGG
273 WSC31 Landrace AAGG|AAGG
274 WSC32 Landrace AAGG|AAGG
275 WSC34 Landrace AAGG|AAGG
276 WSC38 Landrace AAGG|AAGG
277 WSC39 Improved AAGG|AAGG
278 WSC40 Landrace AAGG|AAGG
279 WSC54 Landrace AAGG|AAGG
280 WSC56 Landrace AAGG|AAGG
281 WSC59 Landrace AAGG|AAGG
282 WSC68 Landrace AAGG|AAGG
283 WSC70 Landrace AAGG|AAGG
284 WSC73 Landrace AAGG|AAGG
285 WSC81 Landrace AAGG|AAGG
286 WSC85 Improved AAGG|AAGG
287 WSC91 Landrace AAGG|AAGG
288 WSC93 Landrace AAGG|AAGG
289 WSC98 Landrace AAGG|AAGG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825386 Sobic.001G000200 intron variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser