sorgsd

Variation ID : sbi33825388

Variation Detail

Variation ID	sbi33825388
Type	INDEL
Position	Chr01 13540-13542
Ref /Alleles	GTT/ GT or G
MAF	GT: 0.251
5' Flank	CAACCATGGTGAAAATTTAATTTTAGCAGT
3' Flank	TTTTTTTTAAAATTCTTGTGGGTGCATTTG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GTT\|GTT
2	103	Improved	GTT\|GTT
3	107	Improved	GT\|GT
4	11	Improved	GTT\|GTT
5	110	Improved	GTT\|GTT
6	123	Landrace	GTT\|GTT
7	131	Improved	GTT\|GTT
8	132	Improved	GTT\|GTT
9	135	Improved	GTT\|GTT
10	137	Improved	GTT\|GTT
11	138	Improved	GTT\|GTT
12	14	Improved	GTT\|GTT
13	140	Improved	GTT\|GTT
14	141	Improved	GTT\|GTT
15	144	Improved	GTT\|GTT
16	150	Improved	GTT\|GTT
17	154	Improved	GTT\|GTT
18	159	Landrace	GT\|GT
19	16	Improved	GTT\|GTT
20	161	Landrace	GTT\|GTT
21	167	Improved	GTT\|GTT
22	168	Improved	GTT\|GTT
23	170	Improved	GTT\|GTT
24	173	Improved	GTT\|GTT
25	175	Improved	GTT\|GTT
26	176	Improved	GT\|GT
27	182	Landrace	N\|N
28	186	Improved	GTT\|GTT
29	190	Improved	GTT\|GTT
30	192	Improved	GTT\|GTT
31	194	Improved	N\|N
32	195	Improved	GTT\|GTT
33	197	Improved	N\|N
34	J22	Landrace	N\|N
35	J26	Landrace	GT\|GT
36	J5	Landrace	N\|N
37	J50	Landrace	GT\|GT
38	2001	Landrace	N\|N
39	2005	Improved	N\|N
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	GTT\|GTT
43	2010	Landrace	GTT\|GTT
44	2016	Improved	GTT\|GTT
45	2019	Improved	GTT\|GTT
46	202	Improved	GTT\|GTT
47	2021	Improved	N\|N
48	2023	Improved	N\|N
49	2026	Improved	GTT\|GTT
50	2029	Improved	N\|N
51	2030	Landrace	GTT\|GTT
52	2031	Landrace	GTT\|GTT
53	2036	Improved	GTT\|GTT
54	2037	Improved	GTT\|GTT
55	2038	Improved	GTT\|GTT
56	2039	Improved	N\|N
57	204	Improved	GTT\|GTT
58	2042	Improved	GT\|GT
59	2043	Improved	GTT\|GTT
60	2048	Improved	GT\|GT
61	2049	Improved	GT\|GT
62	205	Improved	GTT\|GTT
63	2050	Improved	GTT\|GTT
64	2052	Improved	GTT\|GTT
65	2054	Improved	N\|N
66	2056	Improved	GT\|GT
67	2059	Improved	GTT\|GTT
68	206	Improved	GTT\|GTT
69	2064	Improved	N\|N
70	2065	Improved	GTT\|GTT
71	2067	Improved	GTT\|GTT
72	2068	Improved	N\|N
73	2069	Improved	N\|N
74	2071	Improved	GTT\|GTT
75	2074	Improved	GTT\|GTT
76	2075	Improved	GTT\|GTT
77	2076	Improved	GTT\|GTT
78	2080	Improved	GTT\|GTT
79	2081	Improved	GTT\|GTT
80	2082	Improved	N\|N
81	2086	Improved	N\|N
82	2088	Improved	GTT\|GTT
83	260	Wild sorghum	GT\|GT
84	261	Improved	GTT\|GTT
85	262	Improved	N\|N
86	263	Improved	GTT\|GTT
87	286	Improved	GTT\|GTT
88	29	Improved	GTT\|GTT
89	3	Improved	GTT\|GTT
90	302546	S.propinquum	N\|N
91	31	Improved	GTT\|GTT
92	32	Improved	GTT\|GTT
93	34	Improved	GTT\|GTT
94	346	Landrace	N\|N
95	348	Wild sorghum	N\|N
96	353	Wild sorghum	GTT\|GTT
97	355	Wild sorghum	N\|N
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	N\|N
100	367	Landrace	GT\|GT
101	s37	S.propinquum	N\|N
102	s38	S.propinquum	N\|N
103	370	Landrace	GT\|GT
104	377	Wild sorghum	N\|N
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	N\|N
107	40	Improved	GTT\|GTT
108	42	Improved	N\|N
109	43	Improved	GTT\|GTT
110	45	Improved	GTT\|GTT
111	47	Improved	N\|N
112	48	Improved	N\|N
113	51	Improved	N\|N
114	53	Improved	GTT\|GTT
115	56	Improved	GT\|GT
116	61	Improved	GTT\|GTT
117	62	Improved	GTT\|GTT
118	66	Landrace	GT\|GT
119	67	Improved	GT\|GT
120	68	Improved	GTT\|GTT
121	70	Improved	N\|N
122	73	Improved	GTT\|GTT
123	75	Improved	GTT\|GTT
124	88	Improved	GTT\|GTT
125	89	Improved	GTT\|GTT
126	91	Improved	GTT\|GTT
127	92	Improved	GTT\|GTT
128	93	Improved	GTT\|GTT
129	94	Improved	GTT\|GTT
130	95	Improved	N\|N
131	96	Improved	GTT\|GTT
132	97	Improved	GTT\|GTT
133	s1	Improved	GT\|GT
134	s36	Wild sorghum	GTT\|GTT
135	s2	Landrace	GT\|GT
136	s3	Improved	GTT\|GTT
137	s32	Improved	GTT\|GTT
138	s43	Weedy	GT\|GT
139	s40	Landrace	N\|N
140	s41	Weedy	GTT\|GTT
141	s39	Landrace	GTT\|GT
142	s42	Landrace	N\|N
143	s47	Improved	N\|N
144	s5	Landrace	GTT\|GTT
145	GW102	Landrace	GT\|GT
146	GW103	Landrace	GTT\|GTT
147	GW104	Landrace	GT\|GT
148	GW105	Landrace	GTT\|GTT
149	GW16	Landrace	N\|N
150	GW2	Landrace	GT\|GT
151	GW34	Landrace	N\|N
152	GW37	Landrace	GTT\|GTT
153	GW58	Landrace	GTT\|GTT
154	GW59	Landrace	N\|N
155	GW9	Landrace	GTT\|GTT
156	s4	Weedy	N\|N
157	s6	Improved	GTT\|GTT
158	s7	Landrace	GTT\|GTT
159	s8	Landrace	GTT\|GTT
160	s9	Landrace	GT\|GT
161	J101	Landrace	GTT\|GTT
162	J103	Improved	GTT\|GTT
163	J112	Landrace	GTT\|GTT
164	J113	Improved	GT\|GT
165	J129	Improved	GTT\|GTT
166	J130	Improved	GT\|GT
167	J136	Improved	GTT\|GTT
168	J152	Improved	GTT\|GTT
169	J2	Landrace	GT\|GT
170	J20	Landrace	GT\|GT
171	J4	Landrace	GT\|GT
172	J42	Landrace	GT\|GT
173	J44	Landrace	GT\|GT
174	J49	Landrace	N\|N
175	J52	Landrace	GT\|GT
176	J53	Landrace	N\|N
177	J54	Landrace	N\|N
178	J57	Landrace	GT\|GT
179	J59	Landrace	GT\|GT
180	J64	Landrace	GT\|GT
181	J66	Landrace	N\|N
182	J67	Landrace	N\|N
183	J69	Landrace	GT\|GT
184	J87	Landrace	N\|N
185	J99	Landrace	GTT\|GTT
186	s45	Landrace	GT\|GT
187	s11	Improved	N\|N
188	s10	Improved	GT\|GT
189	s46	Improved	GTT\|GTT
190	s12	Improved	GT\|GT
191	s13	Landrace	GTT\|GTT
192	MHMD	Landrace	GTT\|GTT
193	s14	Improved	GTT\|GTT
194	s15	Improved	GTT\|GTT
195	s34	Weedy	GTT\|GTT
196	s33	Wild sorghum	GTT\|GTT
197	s21	Wild sorghum	GT\|GT
198	s16	Wild sorghum	GTT\|GTT
199	s44	Improved	GT\|GT
200	s35	Landrace	N\|N
201	s31	Wild sorghum	GTT\|GTT
202	s17	Improved	GTT\|GTT
203	s18	Improved	GTT\|GTT
204	s20	Improved	GTT\|GTT
205	s19	Improved	GTT\|GTT
206	s22	Landrace	N\|N
207	s23	Landrace	N\|N
208	s24	Landrace	N\|N
209	s25	Landrace	GT\|GT
210	s26	Landrace	GTT\|GTT
211	s27	Landrace	N\|N
212	s28	Landrace	GT\|GT
213	s29	Landrace	G\|G
214	s30	Landrace	GT\|GT
215	SL25	Wild sorghum	GTT\|GTT
216	SL105	Wild sorghum	GTT\|GTT
217	SL108	Wild sorghum	GTT\|GTT
218	SL109	Wild sorghum	GTT\|GTT
219	SL12	Wild sorghum	GTT\|GTT
220	SL129	Wild sorghum	GTT\|GTT
221	SL130	Wild sorghum	GT\|GT
222	SL135	Wild sorghum	GTT\|GTT
223	SL136	Wild sorghum	GTT\|GTT
224	SL137	Wild sorghum	GTT\|GTT
225	SL138	Wild sorghum	GTT\|GTT
226	SL140	Wild sorghum	GTT\|GTT
227	SL141	Wild sorghum	GTT\|GTT
228	SL19	Wild sorghum	GTT\|GTT
229	SL28	Wild sorghum	N\|N
230	SL32	Wild sorghum	GTT\|GTT
231	SL35	Wild sorghum	GTT\|GTT
232	SL36	Wild sorghum	GTT\|GTT
233	SL37	Wild sorghum	GTT\|GTT
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	GTT\|GTT
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	GTT\|GT
238	SL49	Wild sorghum	GTT\|GTT
239	SL51	Wild sorghum	GTT\|GTT
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	GTT\|GTT
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	GTT\|GTT
244	s48	Improved	GTT\|GT
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	GTT\|GTT
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	GTT\|GTT
249	WSC5	Landrace	N\|N
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	GT\|GT
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	GT\|GT
254	WSC6	Landrace	N\|N
255	WSC61	Landrace	GTT\|GTT
256	WSC71	Improved	GTT\|GTT
257	WSC72	Landrace	GTT\|GTT
258	WSC79	Landrace	GTT\|GTT
259	WSC94	Landrace	GT\|GT
260	WSC99	Landrace	GTT\|GTT
261	WSC100	Landrace	GTT\|GTT
262	WSC104	Landrace	GTT\|GTT
263	WSC105	Landrace	GTT\|GTT
264	WSC12	Landrace	GT\|GT
265	WSC13	Landrace	GT\|GT
266	WSC16	Landrace	N\|N
267	WSC17	Landrace	GT\|GT
268	WSC18	Landrace	GTT\|GTT
269	WSC20	Landrace	GTT\|GT
270	WSC24	Landrace	GT\|GT
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	N\|N
273	WSC31	Landrace	GT\|GT
274	WSC32	Landrace	GTT\|GTT
275	WSC34	Landrace	GT\|GT
276	WSC38	Landrace	GTT\|GTT
277	WSC39	Improved	N\|N
278	WSC40	Landrace	GTT\|GT
279	WSC54	Landrace	GTT\|GTT
280	WSC56	Landrace	GTT\|GTT
281	WSC59	Landrace	GTT\|GTT
282	WSC68	Landrace	GTT\|GTT
283	WSC70	Landrace	N\|N
284	WSC73	Landrace	GTT\|GTT
285	WSC81	Landrace	GTT\|GTT
286	WSC85	Improved	GTT\|GTT
287	WSC91	Landrace	GTT\|GTT
288	WSC93	Landrace	GTT\|GTT
289	WSC98	Landrace	GTT\|GTT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825388	Sobic.001G000200	intron variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p
sbi33825388	Sobic.001G000200	intron variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

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