Variation ID : sbi33825400

Variation Detail



Variation ID sbi33825400
Type INDEL
Position Chr01 14947-14948
Ref /Alleles CA/ CAAAA or CAA or C
MAF CAA: 0.040
5' Flank GCTCTTTTTTTTTTTCAGTTTCCTCTTGAC
3' Flank AAAAAAAGAAAAGAAGGAACAGTTTTCCAG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved CA|CA
2 103 Improved CA|CA
3 107 Improved CA|CA
4 11 Improved CA|CA
5 110 Improved CA|CA
6 123 Landrace N|N
7 131 Improved CA|CA
8 132 Improved CAA|CAA
9 135 Improved CA|CA
10 137 Improved CA|CA
11 138 Improved CA|CA
12 14 Improved CA|CA
13 140 Improved CA|CA
14 141 Improved CA|CA
15 144 Improved CA|CA
16 150 Improved CA|CA
17 154 Improved CAA|CAA
18 159 Landrace CA|CA
19 16 Improved CA|CA
20 161 Landrace CA|CA
21 167 Improved CA|CA
22 168 Improved CA|CA
23 170 Improved CA|CA
24 173 Improved CAA|CAA
25 175 Improved CA|CA
26 176 Improved CA|CA
27 182 Landrace CA|CA
28 186 Improved N|N
29 190 Improved CA|CA
30 192 Improved CA|CA
31 194 Improved CA|CA
32 195 Improved CA|CA
33 197 Improved CA|CA
34 J22 Landrace CA|CA
35 J26 Landrace CA|CA
36 J5 Landrace CA|CA
37 J50 Landrace CA|CA
38 2001 Landrace N|N
39 2005 Improved CA|CA
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace CA|CA
44 2016 Improved N|N
45 2019 Improved CA|CA
46 202 Improved CA|CA
47 2021 Improved CA|CA
48 2023 Improved N|N
49 2026 Improved CA|CA
50 2029 Improved CA|CA
51 2030 Landrace CA|CA
52 2031 Landrace CA|CA
53 2036 Improved CA|CA
54 2037 Improved CA|CA
55 2038 Improved CA|CA
56 2039 Improved CA|CA
57 204 Improved CA|CA
58 2042 Improved CA|CA
59 2043 Improved CA|CA
60 2048 Improved CA|CA
61 2049 Improved CA|CA
62 205 Improved CA|CA
63 2050 Improved CAA|CAA
64 2052 Improved CA|CA
65 2054 Improved CA|CA
66 2056 Improved N|N
67 2059 Improved CA|CA
68 206 Improved CA|CA
69 2064 Improved CA|CA
70 2065 Improved CA|CA
71 2067 Improved CA|CA
72 2068 Improved CA|CA
73 2069 Improved CA|CA
74 2071 Improved CA|CA
75 2074 Improved N|N
76 2075 Improved CA|CA
77 2076 Improved CA|CA
78 2080 Improved N|N
79 2081 Improved N|N
80 2082 Improved CA|CA
81 2086 Improved CA|CA
82 2088 Improved CA|CA
83 260 Wild sorghum N|N
84 261 Improved CA|CA
85 262 Improved CA|CA
86 263 Improved CA|CA
87 286 Improved CA|CA
88 29 Improved CAA|CAA
89 3 Improved CA|CA
90 302546 S.propinquum N|N
91 31 Improved CA|CA
92 32 Improved CA|CA
93 34 Improved CAA|CAA
94 346 Landrace CA|CA
95 348 Wild sorghum CA|CA
96 353 Wild sorghum CA|CA
97 355 Wild sorghum CA|CA
98 357 Wild sorghum CA|CA
99 364 Wild sorghum CA|CA
100 367 Landrace CA|CA
101 s37 S.propinquum CAAAA|CAAAA
102 s38 S.propinquum CAAAA|CAAAA
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum CA|CA
106 394 Wild sorghum CA|CA
107 40 Improved CA|CA
108 42 Improved N|N
109 43 Improved CAA|CAA
110 45 Improved CA|CA
111 47 Improved CA|CA
112 48 Improved CA|CA
113 51 Improved CA|CA
114 53 Improved CA|CA
115 56 Improved CA|CA
116 61 Improved CA|CA
117 62 Improved CA|CA
118 66 Landrace N|N
119 67 Improved CA|CA
120 68 Improved CA|CA
121 70 Improved CA|CA
122 73 Improved N|N
123 75 Improved CA|CA
124 88 Improved CA|CA
125 89 Improved CA|CA
126 91 Improved CA|CA
127 92 Improved CA|CA
128 93 Improved CA|CA
129 94 Improved CA|CA
130 95 Improved CA|CA
131 96 Improved CA|CA
132 97 Improved CA|CA
133 s1 Improved CA|CA
134 s36 Wild sorghum CA|CA
135 s2 Landrace CA|CA
136 s3 Improved CA|CA
137 s32 Improved CA|CA
138 s43 Weedy CA|CA
139 s40 Landrace CA|CA
140 s41 Weedy CA|CA
141 s39 Landrace CA|CA
142 s42 Landrace CA|CA
143 s47 Improved CA|CA
144 s5 Landrace CA|CA
145 GW102 Landrace C|C
146 GW103 Landrace CA|CA
147 GW104 Landrace CA|CA
148 GW105 Landrace C|C
149 GW16 Landrace CA|CA
150 GW2 Landrace CA|CA
151 GW34 Landrace CA|CA
152 GW37 Landrace N|N
153 GW58 Landrace C|C
154 GW59 Landrace CA|CA
155 GW9 Landrace CA|CA
156 s4 Weedy CA|CA
157 s6 Improved CA|CA
158 s7 Landrace CA|CA
159 s8 Landrace CA|CA
160 s9 Landrace CA|CA
161 J101 Landrace CAA|CAA
162 J103 Improved N|N
163 J112 Landrace N|N
164 J113 Improved CA|CA
165 J129 Improved CA|CA
166 J130 Improved CA|CA
167 J136 Improved CA|CA
168 J152 Improved CA|CA
169 J2 Landrace N|N
170 J20 Landrace CA|CA
171 J4 Landrace CA|CA
172 J42 Landrace CA|CA
173 J44 Landrace CA|CA
174 J49 Landrace N|N
175 J52 Landrace CA|CA
176 J53 Landrace CA|CA
177 J54 Landrace CA|CA
178 J57 Landrace CA|CA
179 J59 Landrace CA|CA
180 J64 Landrace CA|CA
181 J66 Landrace CA|CA
182 J67 Landrace N|N
183 J69 Landrace CA|CA
184 J87 Landrace CA|CA
185 J99 Landrace CA|CA
186 s45 Landrace CA|CA
187 s11 Improved CA|CA
188 s10 Improved CA|CA
189 s46 Improved CA|CA
190 s12 Improved CA|CA
191 s13 Landrace CA|CA
192 MHMD Landrace CA|CA
193 s14 Improved CA|CA
194 s15 Improved CA|CA
195 s34 Weedy CA|CA
196 s33 Wild sorghum CA|CA
197 s21 Wild sorghum CA|CA
198 s16 Wild sorghum CA|CA
199 s44 Improved CA|CA
200 s35 Landrace CA|CA
201 s31 Wild sorghum CA|CA
202 s17 Improved CA|CA
203 s18 Improved CA|CA
204 s20 Improved CA|CA
205 s19 Improved CA|CA
206 s22 Landrace CA|CA
207 s23 Landrace CA|CA
208 s24 Landrace CA|CA
209 s25 Landrace CA|CA
210 s26 Landrace CA|CA
211 s27 Landrace CA|CA
212 s28 Landrace CA|CA
213 s29 Landrace CA|CA
214 s30 Landrace CA|CA
215 SL25 Wild sorghum CA|CA
216 SL105 Wild sorghum CA|CA
217 SL108 Wild sorghum CA|CA
218 SL109 Wild sorghum CA|CA
219 SL12 Wild sorghum CA|CA
220 SL129 Wild sorghum CA|CA
221 SL130 Wild sorghum N|N
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum CA|CA
225 SL138 Wild sorghum CA|CA
226 SL140 Wild sorghum CA|CA
227 SL141 Wild sorghum CA|CA
228 SL19 Wild sorghum CA|CA
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum CA|CA
231 SL35 Wild sorghum CA|CA
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum CA|CA
234 SL39 Wild sorghum CA|CA
235 SL41 Wild sorghum CA|CA
236 SL43 Wild sorghum CA|CA
237 SL47 Wild sorghum CA|CA
238 SL49 Wild sorghum CA|CA
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum CA|CA
241 SL62 Wild sorghum CA|CA
242 SL83 Wild sorghum CA|CA
243 SL97 Landrace N|N
244 s48 Improved CA|CA
245 Tu13 Wild sorghum CA|CA
246 Tu14 Wild sorghum CA|CA
247 Tu30 Wild sorghum CA|CA
248 Tu5 Wild sorghum CA|CA
249 WSC5 Landrace CA|CA
250 WSC15 Landrace CA|CA
251 WSC19 Landrace CA|CA
252 WSC30 Landrace N|N
253 WSC52 Landrace CAA|CAA
254 WSC6 Landrace CA|CA
255 WSC61 Landrace CA|CA
256 WSC71 Improved CA|CA
257 WSC72 Landrace CA|CA
258 WSC79 Landrace CA|CA
259 WSC94 Landrace CA|CA
260 WSC99 Landrace CA|CA
261 WSC100 Landrace CAA|CAA
262 WSC104 Landrace N|N
263 WSC105 Landrace N|N
264 WSC12 Landrace CA|CA
265 WSC13 Landrace CA|CA
266 WSC16 Landrace CA|CA
267 WSC17 Landrace CA|CA
268 WSC18 Landrace CA|CA
269 WSC20 Landrace CA|CA
270 WSC24 Landrace CA|CA
271 WSC25 Landrace CA|CA
272 WSC29 Landrace CA|CA
273 WSC31 Landrace N|N
274 WSC32 Landrace CA|CA
275 WSC34 Landrace CA|CA
276 WSC38 Landrace CA|CA
277 WSC39 Improved CA|CA
278 WSC40 Landrace CA|CA
279 WSC54 Landrace N|N
280 WSC56 Landrace CA|CA
281 WSC59 Landrace CA|CA
282 WSC68 Landrace CA|CA
283 WSC70 Landrace CA|CA
284 WSC73 Landrace CA|CA
285 WSC81 Landrace CA|CA
286 WSC85 Improved CA|CA
287 WSC91 Landrace CA|CA
288 WSC93 Landrace CA|CA
289 WSC98 Landrace CA|CA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825400 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p
sbi33825400 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p
sbi33825400 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser