Variation ID : sbi33825402

Variation Detail



Variation ID sbi33825402
Type INDEL
Position Chr01 15093-15094
Ref /Alleles TA/ T
MAF TA: 0.463
5' Flank TAACAATACTGTAAAATTAAATAACGATGT
3' Flank AAAATGACATTTAATCCAAAAGGCAAAGTT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved T|T
2 103 Improved T|T
3 107 Improved TA|TA
4 11 Improved T|T
5 110 Improved N|N
6 123 Landrace T|T
7 131 Improved TA|TA
8 132 Improved T|T
9 135 Improved T|T
10 137 Improved TA|TA
11 138 Improved TA|TA
12 14 Improved N|N
13 140 Improved TA|TA
14 141 Improved T|T
15 144 Improved T|T
16 150 Improved T|T
17 154 Improved T|T
18 159 Landrace TA|TA
19 16 Improved TA|TA
20 161 Landrace TA|TA
21 167 Improved TA|TA
22 168 Improved TA|TA
23 170 Improved TA|TA
24 173 Improved T|T
25 175 Improved T|T
26 176 Improved TA|TA
27 182 Landrace T|T
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved TA|TA
31 194 Improved T|T
32 195 Improved T|T
33 197 Improved T|T
34 J22 Landrace T|T
35 J26 Landrace TA|TA
36 J5 Landrace T|T
37 J50 Landrace TA|TA
38 2001 Landrace N|N
39 2005 Improved T|T
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace T|T
44 2016 Improved T|T
45 2019 Improved TA|TA
46 202 Improved TA|TA
47 2021 Improved N|N
48 2023 Improved N|N
49 2026 Improved TA|TA
50 2029 Improved T|T
51 2030 Landrace T|T
52 2031 Landrace TA|TA
53 2036 Improved TA|TA
54 2037 Improved T|T
55 2038 Improved N|N
56 2039 Improved T|T
57 204 Improved N|N
58 2042 Improved N|N
59 2043 Improved T|T
60 2048 Improved TA|TA
61 2049 Improved TA|TA
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved TA|TA
65 2054 Improved T|T
66 2056 Improved TA|TA
67 2059 Improved T|T
68 206 Improved TA|TA
69 2064 Improved T|T
70 2065 Improved TA|TA
71 2067 Improved T|T
72 2068 Improved N|N
73 2069 Improved T|T
74 2071 Improved T|T
75 2074 Improved N|N
76 2075 Improved TA|TA
77 2076 Improved TA|TA
78 2080 Improved N|N
79 2081 Improved N|N
80 2082 Improved T|T
81 2086 Improved T|T
82 2088 Improved TA|TA
83 260 Wild sorghum N|N
84 261 Improved TA|TA
85 262 Improved N|N
86 263 Improved TA|TA
87 286 Improved TA|TA
88 29 Improved T|T
89 3 Improved TA|TA
90 302546 S.propinquum N|N
91 31 Improved TA|T
92 32 Improved TA|TA
93 34 Improved T|T
94 346 Landrace TA|TA
95 348 Wild sorghum T|T
96 353 Wild sorghum T|T
97 355 Wild sorghum T|T
98 357 Wild sorghum T|T
99 364 Wild sorghum N|N
100 367 Landrace TA|TA
101 s37 S.propinquum T|T
102 s38 S.propinquum T|T
103 370 Landrace N|N
104 377 Wild sorghum T|T
105 392 Wild sorghum T|T
106 394 Wild sorghum T|T
107 40 Improved N|N
108 42 Improved N|N
109 43 Improved N|N
110 45 Improved T|T
111 47 Improved TA|TA
112 48 Improved T|T
113 51 Improved T|T
114 53 Improved T|T
115 56 Improved TA|TA
116 61 Improved TA|TA
117 62 Improved N|N
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved TA|TA
121 70 Improved N|N
122 73 Improved TA|TA
123 75 Improved TA|TA
124 88 Improved T|T
125 89 Improved N|N
126 91 Improved TA|T
127 92 Improved T|T
128 93 Improved T|T
129 94 Improved T|T
130 95 Improved T|T
131 96 Improved T|T
132 97 Improved T|T
133 s1 Improved TA|TA
134 s36 Wild sorghum T|T
135 s2 Landrace TA|TA
136 s3 Improved TA|TA
137 s32 Improved TA|TA
138 s43 Weedy TA|TA
139 s40 Landrace T|T
140 s41 Weedy T|T
141 s39 Landrace TA|T
142 s42 Landrace T|T
143 s47 Improved TA|TA
144 s5 Landrace T|T
145 GW102 Landrace TA|TA
146 GW103 Landrace T|T
147 GW104 Landrace TA|TA
148 GW105 Landrace T|T
149 GW16 Landrace T|T
150 GW2 Landrace TA|TA
151 GW34 Landrace T|T
152 GW37 Landrace T|T
153 GW58 Landrace T|T
154 GW59 Landrace T|T
155 GW9 Landrace T|T
156 s4 Weedy T|T
157 s6 Improved TA|TA
158 s7 Landrace T|T
159 s8 Landrace TA|TA
160 s9 Landrace TA|TA
161 J101 Landrace T|T
162 J103 Improved TA|TA
163 J112 Landrace T|T
164 J113 Improved TA|TA
165 J129 Improved TA|TA
166 J130 Improved TA|TA
167 J136 Improved TA|TA
168 J152 Improved TA|TA
169 J2 Landrace TA|TA
170 J20 Landrace TA|TA
171 J4 Landrace TA|TA
172 J42 Landrace N|N
173 J44 Landrace TA|TA
174 J49 Landrace T|T
175 J52 Landrace TA|TA
176 J53 Landrace T|T
177 J54 Landrace N|N
178 J57 Landrace TA|TA
179 J59 Landrace TA|TA
180 J64 Landrace TA|TA
181 J66 Landrace TA|TA
182 J67 Landrace TA|TA
183 J69 Landrace TA|TA
184 J87 Landrace T|T
185 J99 Landrace TA|TA
186 s45 Landrace TA|TA
187 s11 Improved T|T
188 s10 Improved TA|TA
189 s46 Improved TA|TA
190 s12 Improved TA|TA
191 s13 Landrace TA|TA
192 MHMD Landrace N|N
193 s14 Improved TA|TA
194 s15 Improved TA|TA
195 s34 Weedy T|T
196 s33 Wild sorghum T|T
197 s21 Wild sorghum TA|TA
198 s16 Wild sorghum T|T
199 s44 Improved TA|TA
200 s35 Landrace T|T
201 s31 Wild sorghum T|T
202 s17 Improved TA|TA
203 s18 Improved TA|TA
204 s20 Improved TA|TA
205 s19 Improved TA|TA
206 s22 Landrace T|T
207 s23 Landrace T|T
208 s24 Landrace T|T
209 s25 Landrace TA|TA
210 s26 Landrace T|T
211 s27 Landrace T|T
212 s28 Landrace TA|TA
213 s29 Landrace TA|TA
214 s30 Landrace TA|TA
215 SL25 Wild sorghum T|T
216 SL105 Wild sorghum T|T
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum T|T
219 SL12 Wild sorghum T|T
220 SL129 Wild sorghum T|T
221 SL130 Wild sorghum T|T
222 SL135 Wild sorghum TA|TA
223 SL136 Wild sorghum T|T
224 SL137 Wild sorghum T|T
225 SL138 Wild sorghum T|T
226 SL140 Wild sorghum N|N
227 SL141 Wild sorghum T|T
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum T|T
230 SL32 Wild sorghum T|T
231 SL35 Wild sorghum T|T
232 SL36 Wild sorghum T|T
233 SL37 Wild sorghum T|T
234 SL39 Wild sorghum TA|TA
235 SL41 Wild sorghum T|T
236 SL43 Wild sorghum T|T
237 SL47 Wild sorghum TA|T
238 SL49 Wild sorghum T|T
239 SL51 Wild sorghum T|T
240 SL53 Wild sorghum T|T
241 SL62 Wild sorghum T|T
242 SL83 Wild sorghum TA|TA
243 SL97 Landrace N|N
244 s48 Improved TA|TA
245 Tu13 Wild sorghum T|T
246 Tu14 Wild sorghum T|T
247 Tu30 Wild sorghum T|T
248 Tu5 Wild sorghum T|T
249 WSC5 Landrace T|T
250 WSC15 Landrace N|N
251 WSC19 Landrace TA|TA
252 WSC30 Landrace N|N
253 WSC52 Landrace TA|TA
254 WSC6 Landrace T|T
255 WSC61 Landrace TA|TA
256 WSC71 Improved TA|TA
257 WSC72 Landrace TA|TA
258 WSC79 Landrace T|T
259 WSC94 Landrace TA|TA
260 WSC99 Landrace T|T
261 WSC100 Landrace T|T
262 WSC104 Landrace T|T
263 WSC105 Landrace N|N
264 WSC12 Landrace TA|TA
265 WSC13 Landrace TA|TA
266 WSC16 Landrace T|T
267 WSC17 Landrace TA|TA
268 WSC18 Landrace TA|TA
269 WSC20 Landrace TA|TA
270 WSC24 Landrace N|N
271 WSC25 Landrace T|T
272 WSC29 Landrace T|T
273 WSC31 Landrace TA|TA
274 WSC32 Landrace T|T
275 WSC34 Landrace TA|TA
276 WSC38 Landrace TA|TA
277 WSC39 Improved N|N
278 WSC40 Landrace TA|TA
279 WSC54 Landrace T|T
280 WSC56 Landrace T|T
281 WSC59 Landrace T|T
282 WSC68 Landrace TA|TA
283 WSC70 Landrace TA|TA
284 WSC73 Landrace TA|TA
285 WSC81 Landrace T|T
286 WSC85 Improved T|T
287 WSC91 Landrace T|T
288 WSC93 Landrace N|N
289 WSC98 Landrace T|T

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825402 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser