Variation ID : sbi33825415

Variation Detail



Variation ID sbi33825415
Type INDEL
Position Chr01 16004-16006
Ref /Alleles CAA/ C or CA
MAF CA: 0.013
5' Flank GAAACGATGTGATTTTTGACAAAAGCAGAC
3' Flank AATTTTTTTTGTAGGTACTCTTTAAGGGAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved CAA|CAA
2 103 Improved CAA|CAA
3 107 Improved CAA|CAA
4 11 Improved CAA|CAA
5 110 Improved CAA|CAA
6 123 Landrace CAA|CAA
7 131 Improved CAA|CAA
8 132 Improved CAA|CAA
9 135 Improved CAA|CAA
10 137 Improved CAA|CAA
11 138 Improved CAA|CAA
12 14 Improved CAA|CAA
13 140 Improved CAA|CAA
14 141 Improved CAA|CAA
15 144 Improved CAA|CAA
16 150 Improved CAA|CAA
17 154 Improved CAA|CAA
18 159 Landrace CAA|CAA
19 16 Improved N|N
20 161 Landrace CAA|CAA
21 167 Improved CAA|CAA
22 168 Improved CAA|CAA
23 170 Improved CAA|CAA
24 173 Improved CAA|CAA
25 175 Improved CAA|CAA
26 176 Improved CAA|CAA
27 182 Landrace CAA|CAA
28 186 Improved CAA|CAA
29 190 Improved CAA|CAA
30 192 Improved CAA|CAA
31 194 Improved N|N
32 195 Improved CAA|CAA
33 197 Improved CAA|CAA
34 J22 Landrace CAA|CAA
35 J26 Landrace CAA|CAA
36 J5 Landrace CAA|CAA
37 J50 Landrace CAA|CAA
38 2001 Landrace CAA|CAA
39 2005 Improved CAA|CAA
40 2008 Improved CAA|CAA
41 2009 Landrace N|N
42 201 Improved CAA|CAA
43 2010 Landrace CAA|CAA
44 2016 Improved CAA|CAA
45 2019 Improved CAA|CAA
46 202 Improved CAA|CAA
47 2021 Improved CAA|CAA
48 2023 Improved CAA|CAA
49 2026 Improved CAA|CAA
50 2029 Improved CAA|CAA
51 2030 Landrace CAA|CAA
52 2031 Landrace CAA|CAA
53 2036 Improved CAA|CAA
54 2037 Improved CAA|CAA
55 2038 Improved CAA|CAA
56 2039 Improved CAA|CAA
57 204 Improved CAA|CAA
58 2042 Improved CAA|CAA
59 2043 Improved CAA|CAA
60 2048 Improved CAA|CAA
61 2049 Improved CAA|CAA
62 205 Improved CAA|CAA
63 2050 Improved N|N
64 2052 Improved CAA|CAA
65 2054 Improved CAA|CAA
66 2056 Improved CAA|CAA
67 2059 Improved CAA|CAA
68 206 Improved CAA|CAA
69 2064 Improved CAA|CAA
70 2065 Improved CAA|CAA
71 2067 Improved CAA|CAA
72 2068 Improved CAA|CAA
73 2069 Improved CAA|CAA
74 2071 Improved CAA|CAA
75 2074 Improved CAA|CAA
76 2075 Improved CAA|CAA
77 2076 Improved CAA|CAA
78 2080 Improved CAA|CAA
79 2081 Improved CAA|CAA
80 2082 Improved CAA|CAA
81 2086 Improved CAA|CAA
82 2088 Improved CAA|CAA
83 260 Wild sorghum N|N
84 261 Improved CAA|CAA
85 262 Improved N|N
86 263 Improved CAA|CAA
87 286 Improved CAA|CAA
88 29 Improved CAA|CAA
89 3 Improved CAA|CAA
90 302546 S.propinquum N|N
91 31 Improved CAA|CAA
92 32 Improved CAA|CAA
93 34 Improved CAA|CA
94 346 Landrace CAA|CAA
95 348 Wild sorghum CA|CA
96 353 Wild sorghum CAA|CAA
97 355 Wild sorghum CAA|CAA
98 357 Wild sorghum CAA|CA
99 364 Wild sorghum CAA|CAA
100 367 Landrace CAA|CAA
101 s37 S.propinquum C|C
102 s38 S.propinquum C|C
103 370 Landrace CAA|CAA
104 377 Wild sorghum CAA|CAA
105 392 Wild sorghum CAA|CA
106 394 Wild sorghum CA|CA
107 40 Improved CAA|CAA
108 42 Improved CAA|CAA
109 43 Improved CAA|CAA
110 45 Improved CAA|CAA
111 47 Improved CAA|CAA
112 48 Improved CAA|CAA
113 51 Improved CAA|CAA
114 53 Improved CAA|CAA
115 56 Improved CAA|CAA
116 61 Improved CAA|CAA
117 62 Improved CAA|CAA
118 66 Landrace CAA|CAA
119 67 Improved CAA|CAA
120 68 Improved CAA|CAA
121 70 Improved CAA|CAA
122 73 Improved CAA|CAA
123 75 Improved CAA|CAA
124 88 Improved CAA|CAA
125 89 Improved CAA|CAA
126 91 Improved CAA|CAA
127 92 Improved CAA|CAA
128 93 Improved CAA|CAA
129 94 Improved CAA|CAA
130 95 Improved N|N
131 96 Improved CAA|CAA
132 97 Improved CAA|CAA
133 s1 Improved CAA|CAA
134 s36 Wild sorghum CAA|CAA
135 s2 Landrace CAA|CAA
136 s3 Improved CAA|CAA
137 s32 Improved CAA|CAA
138 s43 Weedy CAA|CAA
139 s40 Landrace CAA|CAA
140 s41 Weedy CAA|CAA
141 s39 Landrace CAA|CAA
142 s42 Landrace CAA|CAA
143 s47 Improved N|N
144 s5 Landrace CAA|CAA
145 GW102 Landrace CAA|CAA
146 GW103 Landrace CAA|CAA
147 GW104 Landrace CAA|CAA
148 GW105 Landrace CAA|CAA
149 GW16 Landrace CAA|CAA
150 GW2 Landrace CAA|CAA
151 GW34 Landrace CAA|CAA
152 GW37 Landrace CAA|CAA
153 GW58 Landrace CAA|CAA
154 GW59 Landrace CAA|CAA
155 GW9 Landrace CAA|CAA
156 s4 Weedy CAA|CAA
157 s6 Improved CAA|CAA
158 s7 Landrace CAA|CAA
159 s8 Landrace CAA|CAA
160 s9 Landrace CAA|CAA
161 J101 Landrace CAA|CAA
162 J103 Improved N|N
163 J112 Landrace CAA|CAA
164 J113 Improved CAA|CAA
165 J129 Improved CAA|CAA
166 J130 Improved CAA|CAA
167 J136 Improved CAA|CAA
168 J152 Improved CAA|CAA
169 J2 Landrace CAA|CAA
170 J20 Landrace CAA|CAA
171 J4 Landrace CAA|CAA
172 J42 Landrace CAA|CAA
173 J44 Landrace CAA|CAA
174 J49 Landrace CAA|CAA
175 J52 Landrace CAA|CAA
176 J53 Landrace CAA|CAA
177 J54 Landrace CAA|CAA
178 J57 Landrace CAA|CAA
179 J59 Landrace CAA|CAA
180 J64 Landrace CAA|CAA
181 J66 Landrace CAA|CAA
182 J67 Landrace N|N
183 J69 Landrace CAA|CAA
184 J87 Landrace CAA|CAA
185 J99 Landrace CAA|CAA
186 s45 Landrace CAA|CAA
187 s11 Improved CAA|CAA
188 s10 Improved CAA|CAA
189 s46 Improved CAA|CAA
190 s12 Improved CAA|CAA
191 s13 Landrace CAA|CAA
192 MHMD Landrace CAA|CAA
193 s14 Improved CAA|CAA
194 s15 Improved CAA|CAA
195 s34 Weedy CAA|CAA
196 s33 Wild sorghum CAA|CAA
197 s21 Wild sorghum CAA|CAA
198 s16 Wild sorghum CAA|CAA
199 s44 Improved CAA|CAA
200 s35 Landrace CAA|CAA
201 s31 Wild sorghum CAA|CAA
202 s17 Improved CAA|CAA
203 s18 Improved CAA|CAA
204 s20 Improved CAA|CAA
205 s19 Improved CAA|CAA
206 s22 Landrace CAA|CAA
207 s23 Landrace CAA|CAA
208 s24 Landrace CAA|CAA
209 s25 Landrace CAA|CAA
210 s26 Landrace CAA|CAA
211 s27 Landrace CAA|CAA
212 s28 Landrace CAA|CAA
213 s29 Landrace CAA|CAA
214 s30 Landrace CAA|CAA
215 SL25 Wild sorghum N|N
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum CAA|CAA
218 SL109 Wild sorghum CAA|CAA
219 SL12 Wild sorghum CAA|CAA
220 SL129 Wild sorghum CAA|CAA
221 SL130 Wild sorghum CAA|CAA
222 SL135 Wild sorghum CAA|CAA
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum CAA|CAA
225 SL138 Wild sorghum CAA|CAA
226 SL140 Wild sorghum CAA|CAA
227 SL141 Wild sorghum CAA|CAA
228 SL19 Wild sorghum CAA|CAA
229 SL28 Wild sorghum CAA|CAA
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum CAA|CAA
232 SL36 Wild sorghum CAA|CAA
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum CAA|CAA
235 SL41 Wild sorghum CAA|CAA
236 SL43 Wild sorghum CAA|CAA
237 SL47 Wild sorghum CAA|CAA
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum CAA|CAA
240 SL53 Wild sorghum CAA|CAA
241 SL62 Wild sorghum CAA|CAA
242 SL83 Wild sorghum CAA|CAA
243 SL97 Landrace CAA|CAA
244 s48 Improved CAA|CAA
245 Tu13 Wild sorghum CAA|CAA
246 Tu14 Wild sorghum CAA|CAA
247 Tu30 Wild sorghum CAA|CAA
248 Tu5 Wild sorghum CAA|CAA
249 WSC5 Landrace CAA|CAA
250 WSC15 Landrace CAA|CAA
251 WSC19 Landrace CAA|CAA
252 WSC30 Landrace CAA|CAA
253 WSC52 Landrace CAA|CAA
254 WSC6 Landrace CAA|CAA
255 WSC61 Landrace CAA|CAA
256 WSC71 Improved CAA|CAA
257 WSC72 Landrace CAA|CAA
258 WSC79 Landrace N|N
259 WSC94 Landrace CAA|CAA
260 WSC99 Landrace CAA|CAA
261 WSC100 Landrace CAA|CAA
262 WSC104 Landrace CAA|CAA
263 WSC105 Landrace CAA|CAA
264 WSC12 Landrace CAA|CAA
265 WSC13 Landrace CAA|CAA
266 WSC16 Landrace CAA|CAA
267 WSC17 Landrace CAA|CAA
268 WSC18 Landrace CAA|CAA
269 WSC20 Landrace CAA|CAA
270 WSC24 Landrace CAA|CAA
271 WSC25 Landrace N|N
272 WSC29 Landrace CAA|CAA
273 WSC31 Landrace CAA|CAA
274 WSC32 Landrace CAA|CAA
275 WSC34 Landrace CAA|CAA
276 WSC38 Landrace CAA|CAA
277 WSC39 Improved CAA|CAA
278 WSC40 Landrace N|N
279 WSC54 Landrace CAA|CAA
280 WSC56 Landrace CAA|CAA
281 WSC59 Landrace CAA|CAA
282 WSC68 Landrace CAA|CAA
283 WSC70 Landrace CAA|CAA
284 WSC73 Landrace CAA|CAA
285 WSC81 Landrace CAA|CAA
286 WSC85 Improved CAA|CAA
287 WSC91 Landrace CAA|CAA
288 WSC93 Landrace N|N
289 WSC98 Landrace CAA|CAA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825415 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p
sbi33825415 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser