sorgsd

Variation ID : sbi33825423

Variation Detail

Variation ID	sbi33825423
Type	INDEL
Position	Chr01 17126-17126
Ref /Alleles	G/ GAATCTCACTC
MAF	G: 0.480
5' Flank	ACTAGATGCAACTCACTAAGCAATGCACTT
3' Flank	AATCTCACTAGGAATCAAGCAAGGAGATGA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GAATCTCACTC\|GAATCTCACTC
2	103	Improved	GAATCTCACTC\|GAATCTCACTC
3	107	Improved	G\|G
4	11	Improved	GAATCTCACTC\|GAATCTCACTC
5	110	Improved	G\|G
6	123	Landrace	GAATCTCACTC\|GAATCTCACTC
7	131	Improved	G\|G
8	132	Improved	GAATCTCACTC\|GAATCTCACTC
9	135	Improved	GAATCTCACTC\|GAATCTCACTC
10	137	Improved	G\|G
11	138	Improved	G\|G
12	14	Improved	G\|G
13	140	Improved	G\|G
14	141	Improved	GAATCTCACTC\|GAATCTCACTC
15	144	Improved	GAATCTCACTC\|GAATCTCACTC
16	150	Improved	GAATCTCACTC\|GAATCTCACTC
17	154	Improved	GAATCTCACTC\|GAATCTCACTC
18	159	Landrace	G\|G
19	16	Improved	G\|G
20	161	Landrace	G\|G
21	167	Improved	G\|G
22	168	Improved	G\|G
23	170	Improved	G\|G
24	173	Improved	GAATCTCACTC\|GAATCTCACTC
25	175	Improved	GAATCTCACTC\|GAATCTCACTC
26	176	Improved	G\|G
27	182	Landrace	N\|N
28	186	Improved	G\|G
29	190	Improved	G\|G
30	192	Improved	G\|G
31	194	Improved	GAATCTCACTC\|GAATCTCACTC
32	195	Improved	GAATCTCACTC\|GAATCTCACTC
33	197	Improved	GAATCTCACTC\|GAATCTCACTC
34	J22	Landrace	GAATCTCACTC\|GAATCTCACTC
35	J26	Landrace	G\|G
36	J5	Landrace	GAATCTCACTC\|GAATCTCACTC
37	J50	Landrace	G\|G
38	2001	Landrace	GAATCTCACTC\|GAATCTCACTC
39	2005	Improved	GAATCTCACTC\|GAATCTCACTC
40	2008	Improved	G\|G
41	2009	Landrace	GAATCTCACTC\|GAATCTCACTC
42	201	Improved	GAATCTCACTC\|GAATCTCACTC
43	2010	Landrace	GAATCTCACTC\|GAATCTCACTC
44	2016	Improved	GAATCTCACTC\|GAATCTCACTC
45	2019	Improved	G\|G
46	202	Improved	G\|G
47	2021	Improved	GAATCTCACTC\|GAATCTCACTC
48	2023	Improved	GAATCTCACTC\|GAATCTCACTC
49	2026	Improved	G\|G
50	2029	Improved	GAATCTCACTC\|GAATCTCACTC
51	2030	Landrace	GAATCTCACTC\|GAATCTCACTC
52	2031	Landrace	G\|G
53	2036	Improved	G\|G
54	2037	Improved	GAATCTCACTC\|GAATCTCACTC
55	2038	Improved	GAATCTCACTC\|GAATCTCACTC
56	2039	Improved	GAATCTCACTC\|GAATCTCACTC
57	204	Improved	G\|GAATCTCACTC
58	2042	Improved	G\|G
59	2043	Improved	GAATCTCACTC\|GAATCTCACTC
60	2048	Improved	G\|G
61	2049	Improved	G\|G
62	205	Improved	G\|G
63	2050	Improved	N\|N
64	2052	Improved	G\|G
65	2054	Improved	GAATCTCACTC\|GAATCTCACTC
66	2056	Improved	G\|G
67	2059	Improved	GAATCTCACTC\|GAATCTCACTC
68	206	Improved	G\|G
69	2064	Improved	N\|N
70	2065	Improved	G\|G
71	2067	Improved	GAATCTCACTC\|GAATCTCACTC
72	2068	Improved	GAATCTCACTC\|GAATCTCACTC
73	2069	Improved	GAATCTCACTC\|GAATCTCACTC
74	2071	Improved	GAATCTCACTC\|GAATCTCACTC
75	2074	Improved	GAATCTCACTC\|GAATCTCACTC
76	2075	Improved	G\|G
77	2076	Improved	G\|G
78	2080	Improved	GAATCTCACTC\|GAATCTCACTC
79	2081	Improved	G\|G
80	2082	Improved	GAATCTCACTC\|GAATCTCACTC
81	2086	Improved	GAATCTCACTC\|GAATCTCACTC
82	2088	Improved	G\|G
83	260	Wild sorghum	G\|G
84	261	Improved	G\|G
85	262	Improved	GAATCTCACTC\|GAATCTCACTC
86	263	Improved	G\|G
87	286	Improved	G\|G
88	29	Improved	GAATCTCACTC\|GAATCTCACTC
89	3	Improved	G\|G
90	302546	S.propinquum	G\|G
91	31	Improved	G\|GAATCTCACTC
92	32	Improved	G\|G
93	34	Improved	G\|GAATCTCACTC
94	346	Landrace	G\|G
95	348	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
96	353	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
97	355	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
98	357	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
99	364	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
100	367	Landrace	G\|G
101	s37	S.propinquum	G\|G
102	s38	S.propinquum	N\|N
103	370	Landrace	G\|G
104	377	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
105	392	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
106	394	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
107	40	Improved	G\|G
108	42	Improved	GAATCTCACTC\|GAATCTCACTC
109	43	Improved	G\|GAATCTCACTC
110	45	Improved	GAATCTCACTC\|GAATCTCACTC
111	47	Improved	G\|G
112	48	Improved	GAATCTCACTC\|GAATCTCACTC
113	51	Improved	GAATCTCACTC\|GAATCTCACTC
114	53	Improved	GAATCTCACTC\|GAATCTCACTC
115	56	Improved	G\|G
116	61	Improved	G\|G
117	62	Improved	G\|G
118	66	Landrace	G\|G
119	67	Improved	GAATCTCACTC\|GAATCTCACTC
120	68	Improved	G\|G
121	70	Improved	GAATCTCACTC\|GAATCTCACTC
122	73	Improved	N\|N
123	75	Improved	G\|G
124	88	Improved	GAATCTCACTC\|GAATCTCACTC
125	89	Improved	GAATCTCACTC\|GAATCTCACTC
126	91	Improved	GAATCTCACTC\|GAATCTCACTC
127	92	Improved	GAATCTCACTC\|GAATCTCACTC
128	93	Improved	GAATCTCACTC\|GAATCTCACTC
129	94	Improved	N\|N
130	95	Improved	GAATCTCACTC\|GAATCTCACTC
131	96	Improved	GAATCTCACTC\|GAATCTCACTC
132	97	Improved	GAATCTCACTC\|GAATCTCACTC
133	s1	Improved	G\|G
134	s36	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
135	s2	Landrace	G\|G
136	s3	Improved	G\|G
137	s32	Improved	G\|G
138	s43	Weedy	G\|G
139	s40	Landrace	GAATCTCACTC\|GAATCTCACTC
140	s41	Weedy	GAATCTCACTC\|GAATCTCACTC
141	s39	Landrace	G\|GAATCTCACTC
142	s42	Landrace	GAATCTCACTC\|GAATCTCACTC
143	s47	Improved	G\|G
144	s5	Landrace	GAATCTCACTC\|GAATCTCACTC
145	GW102	Landrace	G\|G
146	GW103	Landrace	GAATCTCACTC\|GAATCTCACTC
147	GW104	Landrace	G\|G
148	GW105	Landrace	GAATCTCACTC\|GAATCTCACTC
149	GW16	Landrace	GAATCTCACTC\|GAATCTCACTC
150	GW2	Landrace	G\|G
151	GW34	Landrace	GAATCTCACTC\|GAATCTCACTC
152	GW37	Landrace	GAATCTCACTC\|GAATCTCACTC
153	GW58	Landrace	GAATCTCACTC\|GAATCTCACTC
154	GW59	Landrace	GAATCTCACTC\|GAATCTCACTC
155	GW9	Landrace	GAATCTCACTC\|GAATCTCACTC
156	s4	Weedy	GAATCTCACTC\|GAATCTCACTC
157	s6	Improved	G\|G
158	s7	Landrace	GAATCTCACTC\|GAATCTCACTC
159	s8	Landrace	G\|G
160	s9	Landrace	G\|G
161	J101	Landrace	GAATCTCACTC\|GAATCTCACTC
162	J103	Improved	G\|G
163	J112	Landrace	GAATCTCACTC\|GAATCTCACTC
164	J113	Improved	G\|G
165	J129	Improved	G\|G
166	J130	Improved	G\|G
167	J136	Improved	G\|G
168	J152	Improved	G\|G
169	J2	Landrace	G\|G
170	J20	Landrace	G\|G
171	J4	Landrace	G\|G
172	J42	Landrace	G\|G
173	J44	Landrace	N\|N
174	J49	Landrace	GAATCTCACTC\|GAATCTCACTC
175	J52	Landrace	G\|G
176	J53	Landrace	GAATCTCACTC\|GAATCTCACTC
177	J54	Landrace	GAATCTCACTC\|GAATCTCACTC
178	J57	Landrace	G\|G
179	J59	Landrace	G\|G
180	J64	Landrace	G\|G
181	J66	Landrace	G\|G
182	J67	Landrace	G\|G
183	J69	Landrace	G\|G
184	J87	Landrace	GAATCTCACTC\|GAATCTCACTC
185	J99	Landrace	G\|G
186	s45	Landrace	G\|G
187	s11	Improved	GAATCTCACTC\|GAATCTCACTC
188	s10	Improved	G\|G
189	s46	Improved	G\|G
190	s12	Improved	G\|G
191	s13	Landrace	G\|G
192	MHMD	Landrace	GAATCTCACTC\|GAATCTCACTC
193	s14	Improved	G\|G
194	s15	Improved	G\|G
195	s34	Weedy	GAATCTCACTC\|GAATCTCACTC
196	s33	Wild sorghum	G\|GAATCTCACTC
197	s21	Wild sorghum	G\|G
198	s16	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
199	s44	Improved	G\|G
200	s35	Landrace	GAATCTCACTC\|GAATCTCACTC
201	s31	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
202	s17	Improved	G\|G
203	s18	Improved	G\|G
204	s20	Improved	G\|G
205	s19	Improved	G\|G
206	s22	Landrace	GAATCTCACTC\|GAATCTCACTC
207	s23	Landrace	GAATCTCACTC\|GAATCTCACTC
208	s24	Landrace	GAATCTCACTC\|GAATCTCACTC
209	s25	Landrace	G\|G
210	s26	Landrace	GAATCTCACTC\|GAATCTCACTC
211	s27	Landrace	GAATCTCACTC\|GAATCTCACTC
212	s28	Landrace	G\|G
213	s29	Landrace	G\|G
214	s30	Landrace	G\|G
215	SL25	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
216	SL105	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
217	SL108	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
218	SL109	Wild sorghum	N\|N
219	SL12	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
220	SL129	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
221	SL130	Wild sorghum	N\|N
222	SL135	Wild sorghum	G\|G
223	SL136	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
224	SL137	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
225	SL138	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
226	SL140	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
227	SL141	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
230	SL32	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
231	SL35	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
232	SL36	Wild sorghum	N\|N
233	SL37	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
234	SL39	Wild sorghum	G\|G
235	SL41	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
236	SL43	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
237	SL47	Wild sorghum	G\|G
238	SL49	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
241	SL62	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
242	SL83	Wild sorghum	G\|G
243	SL97	Landrace	GAATCTCACTC\|GAATCTCACTC
244	s48	Improved	G\|G
245	Tu13	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
246	Tu14	Wild sorghum	GAATCTCACTC\|GAATCTCACTC
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	N\|N
249	WSC5	Landrace	GAATCTCACTC\|GAATCTCACTC
250	WSC15	Landrace	GAATCTCACTC\|GAATCTCACTC
251	WSC19	Landrace	G\|G
252	WSC30	Landrace	G\|G
253	WSC52	Landrace	G\|G
254	WSC6	Landrace	GAATCTCACTC\|GAATCTCACTC
255	WSC61	Landrace	G\|G
256	WSC71	Improved	G\|G
257	WSC72	Landrace	G\|G
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	G\|G
260	WSC99	Landrace	GAATCTCACTC\|GAATCTCACTC
261	WSC100	Landrace	GAATCTCACTC\|GAATCTCACTC
262	WSC104	Landrace	GAATCTCACTC\|GAATCTCACTC
263	WSC105	Landrace	G\|G
264	WSC12	Landrace	G\|G
265	WSC13	Landrace	G\|G
266	WSC16	Landrace	GAATCTCACTC\|GAATCTCACTC
267	WSC17	Landrace	G\|G
268	WSC18	Landrace	G\|G
269	WSC20	Landrace	G\|G
270	WSC24	Landrace	G\|G
271	WSC25	Landrace	GAATCTCACTC\|GAATCTCACTC
272	WSC29	Landrace	GAATCTCACTC\|GAATCTCACTC
273	WSC31	Landrace	G\|G
274	WSC32	Landrace	GAATCTCACTC\|GAATCTCACTC
275	WSC34	Landrace	G\|G
276	WSC38	Landrace	G\|G
277	WSC39	Improved	GAATCTCACTC\|GAATCTCACTC
278	WSC40	Landrace	G\|G
279	WSC54	Landrace	GAATCTCACTC\|GAATCTCACTC
280	WSC56	Landrace	GAATCTCACTC\|GAATCTCACTC
281	WSC59	Landrace	GAATCTCACTC\|GAATCTCACTC
282	WSC68	Landrace	N\|N
283	WSC70	Landrace	G\|G
284	WSC73	Landrace	G\|G
285	WSC81	Landrace	GAATCTCACTC\|GAATCTCACTC
286	WSC85	Improved	GAATCTCACTC\|GAATCTCACTC
287	WSC91	Landrace	GAATCTCACTC\|GAATCTCACTC
288	WSC93	Landrace	GAATCTCACTC\|GAATCTCACTC
289	WSC98	Landrace	GAATCTCACTC\|GAATCTCACTC

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825423	Sobic.001G000200	upstream gene variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

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