Variation ID : sbi33825432

Variation Detail



Variation ID sbi33825432
Type INDEL
Position Chr01 18499-18507
Ref /Alleles TAATAAATA/ TAATAAATAAATA or TAATAAATAAATAAATA or T or TAATAAATAAATAAATAAATAAATA
MAF TAATAAATAAATA: 0.189
5' Flank TGGCAAGAGCATCCTGTAGAACAATGCTAC
3' Flank AATAAATAAATAATCCTAAAAGGTTAAGAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved TAATAAATA|TAATAAATA
4 11 Improved N|N
5 110 Improved TAATAAATA|TAATAAATA
6 123 Landrace TAATAAATA|TAATAAATA
7 131 Improved N|N
8 132 Improved TAATAAATA|TAATAAATA
9 135 Improved N|N
10 137 Improved TAATAAATA|TAATAAATA
11 138 Improved TAATAAATA|TAATAAATA
12 14 Improved TAATAAATA|TAATAAATA
13 140 Improved TAATAAATA|TAATAAATA
14 141 Improved TAATAAATAAATA|TAATAAATAAATA
15 144 Improved TAATAAATAAATA|TAATAAATAAATA
16 150 Improved TAATAAATAAATA|TAATAAATAAATA
17 154 Improved TAATAAATA|TAATAAATA
18 159 Landrace TAATAAATA|TAATAAATA
19 16 Improved TAATAAATA|TAATAAATA
20 161 Landrace TAATAAATA|TAATAAATA
21 167 Improved TAATAAATA|TAATAAATA
22 168 Improved TAATAAATA|TAATAAATA
23 170 Improved TAATAAATA|TAATAAATA
24 173 Improved TAATAAATA|TAATAAATA
25 175 Improved TAATAAATAAATA|TAATAAATAAATA
26 176 Improved TAATAAATA|TAATAAATA
27 182 Landrace TAATAAATA|TAATAAATA
28 186 Improved TAATAAATA|TAATAAATA
29 190 Improved TAATAAATA|TAATAAATA
30 192 Improved TAATAAATA|TAATAAATA
31 194 Improved TAATAAATA|TAATAAATA
32 195 Improved TAATAAATA|TAATAAATA
33 197 Improved TAATAAATA|TAATAAATA
34 J22 Landrace TAATAAATA|TAATAAATA
35 J26 Landrace TAATAAATA|TAATAAATA
36 J5 Landrace TAATAAATA|TAATAAATA
37 J50 Landrace TAATAAATA|TAATAAATA
38 2001 Landrace TAATAAATA|TAATAAATA
39 2005 Improved TAATAAATA|TAATAAATA
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved TAATAAATAAATA|TAATAAATAAATA
43 2010 Landrace TAATAAATAAATA|TAATAAATAAATA
44 2016 Improved TAATAAATA|TAATAAATA
45 2019 Improved TAATAAATA|TAATAAATA
46 202 Improved TAATAAATA|TAATAAATA
47 2021 Improved TAATAAATA|TAATAAATA
48 2023 Improved TAATAAATA|TAATAAATA
49 2026 Improved TAATAAATA|TAATAAATA
50 2029 Improved TAATAAATA|TAATAAATA
51 2030 Landrace TAATAAATAAATA|TAATAAATAAATA
52 2031 Landrace TAATAAATA|TAATAAATA
53 2036 Improved TAATAAATA|TAATAAATA
54 2037 Improved TAATAAATAAATA|TAATAAATAAATA
55 2038 Improved TAATAAATAAATA|TAATAAATAAATA
56 2039 Improved N|N
57 204 Improved TAATAAATA|TAATAAATA
58 2042 Improved TAATAAATA|TAATAAATA
59 2043 Improved TAATAAATAAATA|TAATAAATAAATA
60 2048 Improved N|N
61 2049 Improved TAATAAATA|TAATAAATA
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved TAATAAATA|TAATAAATA
65 2054 Improved N|N
66 2056 Improved TAATAAATA|TAATAAATA
67 2059 Improved TAATAAATAAATA|TAATAAATAAATA
68 206 Improved TAATAAATA|TAATAAATA
69 2064 Improved TAATAAATA|TAATAAATA
70 2065 Improved TAATAAATA|TAATAAATA
71 2067 Improved TAATAAATA|TAATAAATA
72 2068 Improved TAATAAATA|TAATAAATA
73 2069 Improved N|N
74 2071 Improved TAATAAATAAATA|TAATAAATAAATA
75 2074 Improved TAATAAATA|TAATAAATA
76 2075 Improved TAATAAATA|TAATAAATA
77 2076 Improved TAATAAATA|TAATAAATA
78 2080 Improved TAATAAATA|TAATAAATA
79 2081 Improved N|N
80 2082 Improved TAATAAATA|TAATAAATA
81 2086 Improved TAATAAATA|TAATAAATA
82 2088 Improved TAATAAATA|TAATAAATA
83 260 Wild sorghum N|N
84 261 Improved TAATAAATA|TAATAAATA
85 262 Improved N|N
86 263 Improved TAATAAATA|TAATAAATA
87 286 Improved TAATAAATA|TAATAAATA
88 29 Improved TAATAAATA|TAATAAATA
89 3 Improved TAATAAATA|TAATAAATA
90 302546 S.propinquum N|N
91 31 Improved TAATAAATA|TAATAAATAAATA
92 32 Improved N|N
93 34 Improved TAATAAATA|TAATAAATA
94 346 Landrace TAATAAATA|TAATAAATA
95 348 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
96 353 Wild sorghum TAATAAATA|TAATAAATA
97 355 Wild sorghum TAATAAATA|TAATAAATA
98 357 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
99 364 Wild sorghum TAATAAATA|TAATAAATA
100 367 Landrace TAATAAATA|TAATAAATA
101 s37 S.propinquum TAATAAATAAATA|TAATAAATAAATA
102 s38 S.propinquum TAATAAATAAATA|TAATAAATAAATA
103 370 Landrace TAATAAATA|TAATAAATA
104 377 Wild sorghum TAATAAATA|TAATAAATA
105 392 Wild sorghum N|N
106 394 Wild sorghum N|N
107 40 Improved TAATAAATA|TAATAAATA
108 42 Improved TAATAAATAAATA|TAATAAATAAATA
109 43 Improved TAATAAATA|TAATAAATA
110 45 Improved TAATAAATA|TAATAAATA
111 47 Improved TAATAAATA|TAATAAATA
112 48 Improved TAATAAATA|TAATAAATA
113 51 Improved TAATAAATAAATA|TAATAAATAAATA
114 53 Improved TAATAAATAAATA|TAATAAATAAATA
115 56 Improved TAATAAATA|TAATAAATA
116 61 Improved TAATAAATA|TAATAAATA
117 62 Improved TAATAAATA|TAATAAATA
118 66 Landrace TAATAAATA|TAATAAATA
119 67 Improved TAATAAATAAATA|TAATAAATAAATA
120 68 Improved TAATAAATA|TAATAAATA
121 70 Improved TAATAAATA|TAATAAATA
122 73 Improved TAATAAATA|TAATAAATA
123 75 Improved TAATAAATA|TAATAAATA
124 88 Improved TAATAAATAAATA|TAATAAATAAATA
125 89 Improved TAATAAATA|TAATAAATA
126 91 Improved TAATAAATAAATA|TAATAAATAAATA
127 92 Improved TAATAAATAAATA|TAATAAATAAATA
128 93 Improved TAATAAATAAATA|TAATAAATAAATA
129 94 Improved TAATAAATAAATA|TAATAAATAAATA
130 95 Improved N|N
131 96 Improved TAATAAATAAATA|TAATAAATAAATA
132 97 Improved TAATAAATAAATA|TAATAAATAAATA
133 s1 Improved TAATAAATA|TAATAAATA
134 s36 Wild sorghum TAATAAATA|TAATAAATA
135 s2 Landrace TAATAAATA|TAATAAATA
136 s3 Improved TAATAAATA|TAATAAATA
137 s32 Improved TAATAAATA|TAATAAATA
138 s43 Weedy TAATAAATA|TAATAAATA
139 s40 Landrace TAATAAATAAATAAATA|TAATAAATAAATAAATA
140 s41 Weedy TAATAAATAAATAAATA|TAATAAATAAATAAATA
141 s39 Landrace TAATAAATA|TAATAAATA
142 s42 Landrace TAATAAATAAATA|TAATAAATAAATA
143 s47 Improved N|N
144 s5 Landrace TAATAAATAAATA|TAATAAATAAATA
145 GW102 Landrace TAATAAATA|TAATAAATA
146 GW103 Landrace TAATAAATAAATA|TAATAAATAAATA
147 GW104 Landrace TAATAAATA|TAATAAATA
148 GW105 Landrace TAATAAATAAATAAATA|TAATAAATAAATAAATA
149 GW16 Landrace TAATAAATA|TAATAAATA
150 GW2 Landrace TAATAAATA|TAATAAATA
151 GW34 Landrace TAATAAATA|TAATAAATA
152 GW37 Landrace TAATAAATA|TAATAAATA
153 GW58 Landrace TAATAAATAAATAAATA|TAATAAATAAATAAATA
154 GW59 Landrace TAATAAATA|TAATAAATA
155 GW9 Landrace TAATAAATA|TAATAAATA
156 s4 Weedy TAATAAATA|TAATAAATA
157 s6 Improved TAATAAATA|TAATAAATA
158 s7 Landrace TAATAAATA|TAATAAATA
159 s8 Landrace TAATAAATA|TAATAAATA
160 s9 Landrace TAATAAATA|TAATAAATA
161 J101 Landrace TAATAAATA|TAATAAATA
162 J103 Improved TAATAAATA|TAATAAATA
163 J112 Landrace TAATAAATA|TAATAAATA
164 J113 Improved TAATAAATA|TAATAAATA
165 J129 Improved TAATAAATA|TAATAAATA
166 J130 Improved TAATAAATA|TAATAAATA
167 J136 Improved TAATAAATA|TAATAAATA
168 J152 Improved TAATAAATA|TAATAAATA
169 J2 Landrace TAATAAATA|TAATAAATA
170 J20 Landrace TAATAAATA|TAATAAATA
171 J4 Landrace TAATAAATA|TAATAAATA
172 J42 Landrace TAATAAATA|TAATAAATA
173 J44 Landrace TAATAAATA|TAATAAATA
174 J49 Landrace TAATAAATA|TAATAAATA
175 J52 Landrace TAATAAATA|TAATAAATA
176 J53 Landrace TAATAAATA|TAATAAATA
177 J54 Landrace TAATAAATA|TAATAAATA
178 J57 Landrace TAATAAATA|TAATAAATA
179 J59 Landrace TAATAAATA|TAATAAATA
180 J64 Landrace TAATAAATA|TAATAAATA
181 J66 Landrace N|N
182 J67 Landrace N|N
183 J69 Landrace TAATAAATA|TAATAAATA
184 J87 Landrace TAATAAATA|TAATAAATA
185 J99 Landrace TAATAAATA|TAATAAATA
186 s45 Landrace TAATAAATA|TAATAAATA
187 s11 Improved TAATAAATAAATA|TAATAAATAAATA
188 s10 Improved TAATAAATA|TAATAAATA
189 s46 Improved TAATAAATA|TAATAAATA
190 s12 Improved TAATAAATA|TAATAAATA
191 s13 Landrace TAATAAATA|TAATAAATA
192 MHMD Landrace TAATAAATAAATA|TAATAAATAAATA
193 s14 Improved TAATAAATA|TAATAAATA
194 s15 Improved TAATAAATA|TAATAAATA
195 s34 Weedy TAATAAATA|TAATAAATA
196 s33 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
197 s21 Wild sorghum TAATAAATA|TAATAAATA
198 s16 Wild sorghum TAATAAATA|TAATAAATA
199 s44 Improved TAATAAATA|TAATAAATA
200 s35 Landrace TAATAAATA|TAATAAATAAATA
201 s31 Wild sorghum TAATAAATA|TAATAAATA
202 s17 Improved TAATAAATA|TAATAAATA
203 s18 Improved TAATAAATA|TAATAAATA
204 s20 Improved TAATAAATA|TAATAAATA
205 s19 Improved TAATAAATA|TAATAAATA
206 s22 Landrace TAATAAATAAATA|TAATAAATAAATA
207 s23 Landrace TAATAAATAAATA|TAATAAATAAATA
208 s24 Landrace TAATAAATA|TAATAAATA
209 s25 Landrace TAATAAATA|TAATAAATA
210 s26 Landrace TAATAAATAAATA|TAATAAATAAATA
211 s27 Landrace TAATAAATA|TAATAAATAAATA
212 s28 Landrace TAATAAATA|TAATAAATA
213 s29 Landrace TAATAAATA|TAATAAATA
214 s30 Landrace TAATAAATA|TAATAAATA
215 SL25 Wild sorghum TAATAAATA|TAATAAATA
216 SL105 Wild sorghum TAATAAATAAATAAATA|TAATAAATAAATAAATA
217 SL108 Wild sorghum TAATAAATAAATAAATA|TAATAAATAAATAAATA
218 SL109 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
219 SL12 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
220 SL129 Wild sorghum TAATAAATAAATAAATA|TAATAAATAAATAAATA
221 SL130 Wild sorghum TAATAAATA|TAATAAATA
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum TAATAAATA|TAATAAATA
224 SL137 Wild sorghum TAATAAATAAATAAATAAATAAATA|TAATAAATAAATAAATAAATAAATA
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum TAATAAATA|TAATAAATAAATA
227 SL141 Wild sorghum TAATAAATAAATAAATA|TAATAAATAAATAAATA
228 SL19 Wild sorghum TAATAAATA|TAATAAATA
229 SL28 Wild sorghum TAATAAATA|TAATAAATA
230 SL32 Wild sorghum TAATAAATA|TAATAAATA
231 SL35 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
232 SL36 Wild sorghum TAATAAATAAATAAATA|TAATAAATAAATAAATA
233 SL37 Wild sorghum TAATAAATAAATAAATA|TAATAAATAAATAAATA
234 SL39 Wild sorghum TAATAAATA|TAATAAATA
235 SL41 Wild sorghum TAATAAATAAATAAATA|TAATAAATAAATAAATA
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum TAATAAATA|TAATAAATA
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum TAATAAATA|TAATAAATA
240 SL53 Wild sorghum TAATAAATA|TAATAAATA
241 SL62 Wild sorghum TAATAAATA|T
242 SL83 Wild sorghum TAATAAATA|TAATAAATA
243 SL97 Landrace TAATAAATA|TAATAAATA
244 s48 Improved TAATAAATA|TAATAAATA
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
247 Tu30 Wild sorghum TAATAAATA|TAATAAATA
248 Tu5 Wild sorghum TAATAAATAAATA|TAATAAATAAATA
249 WSC5 Landrace TAATAAATA|TAATAAATA
250 WSC15 Landrace TAATAAATA|TAATAAATA
251 WSC19 Landrace TAATAAATA|TAATAAATA
252 WSC30 Landrace TAATAAATA|TAATAAATA
253 WSC52 Landrace TAATAAATA|TAATAAATA
254 WSC6 Landrace TAATAAATA|TAATAAATA
255 WSC61 Landrace TAATAAATA|TAATAAATA
256 WSC71 Improved TAATAAATA|TAATAAATA
257 WSC72 Landrace TAATAAATA|TAATAAATA
258 WSC79 Landrace N|N
259 WSC94 Landrace TAATAAATA|TAATAAATA
260 WSC99 Landrace TAATAAATAAATA|TAATAAATAAATA
261 WSC100 Landrace TAATAAATA|TAATAAATA
262 WSC104 Landrace TAATAAATA|TAATAAATA
263 WSC105 Landrace TAATAAATA|TAATAAATA
264 WSC12 Landrace TAATAAATA|TAATAAATA
265 WSC13 Landrace TAATAAATA|TAATAAATA
266 WSC16 Landrace N|N
267 WSC17 Landrace TAATAAATA|TAATAAATA
268 WSC18 Landrace TAATAAATA|TAATAAATA
269 WSC20 Landrace TAATAAATA|TAATAAATA
270 WSC24 Landrace TAATAAATA|TAATAAATA
271 WSC25 Landrace N|N
272 WSC29 Landrace TAATAAATA|TAATAAATA
273 WSC31 Landrace TAATAAATA|TAATAAATA
274 WSC32 Landrace TAATAAATAAATAAATA|TAATAAATAAATAAATA
275 WSC34 Landrace TAATAAATA|TAATAAATA
276 WSC38 Landrace TAATAAATA|TAATAAATA
277 WSC39 Improved TAATAAATA|TAATAAATA
278 WSC40 Landrace TAATAAATA|TAATAAATA
279 WSC54 Landrace TAATAAATA|TAATAAATA
280 WSC56 Landrace TAATAAATA|TAATAAATAAATA
281 WSC59 Landrace TAATAAATAAATAAATA|TAATAAATAAATAAATA
282 WSC68 Landrace TAATAAATA|TAATAAATA
283 WSC70 Landrace TAATAAATA|TAATAAATA
284 WSC73 Landrace TAATAAATA|TAATAAATA
285 WSC81 Landrace TAATAAATAAATA|TAATAAATAAATA
286 WSC85 Improved TAATAAATAAATA|TAATAAATAAATA
287 WSC91 Landrace TAATAAATAAATA|TAATAAATAAATA
288 WSC93 Landrace TAATAAATAAATA|TAATAAATAAATA
289 WSC98 Landrace TAATAAATA|TAATAAATA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825432 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825432 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825432 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825432 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825432 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825432 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p
sbi33825432 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p
sbi33825432 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p
sbi33825432 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

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