sorgsd

Variation ID : sbi33825437

Variation Detail

Variation ID	sbi33825437
Type	INDEL
Position	Chr01 20374-20378
Ref /Alleles	GTAGC/ G
MAF	G: 0.004
5' Flank	GTTTGGCCGCACGCTGGCTCCGGCTCTGTG
3' Flank	TCTGGCAGCTTATACGCACCAAACAACGCC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GTAGC\|GTAGC
2	103	Improved	GTAGC\|GTAGC
3	107	Improved	GTAGC\|GTAGC
4	11	Improved	GTAGC\|GTAGC
5	110	Improved	GTAGC\|GTAGC
6	123	Landrace	GTAGC\|GTAGC
7	131	Improved	GTAGC\|GTAGC
8	132	Improved	GTAGC\|GTAGC
9	135	Improved	GTAGC\|GTAGC
10	137	Improved	GTAGC\|GTAGC
11	138	Improved	GTAGC\|GTAGC
12	14	Improved	GTAGC\|GTAGC
13	140	Improved	N\|N
14	141	Improved	GTAGC\|GTAGC
15	144	Improved	GTAGC\|GTAGC
16	150	Improved	GTAGC\|GTAGC
17	154	Improved	GTAGC\|GTAGC
18	159	Landrace	GTAGC\|GTAGC
19	16	Improved	GTAGC\|GTAGC
20	161	Landrace	GTAGC\|GTAGC
21	167	Improved	GTAGC\|GTAGC
22	168	Improved	GTAGC\|GTAGC
23	170	Improved	GTAGC\|GTAGC
24	173	Improved	GTAGC\|GTAGC
25	175	Improved	GTAGC\|GTAGC
26	176	Improved	GTAGC\|GTAGC
27	182	Landrace	GTAGC\|GTAGC
28	186	Improved	GTAGC\|GTAGC
29	190	Improved	GTAGC\|GTAGC
30	192	Improved	GTAGC\|GTAGC
31	194	Improved	GTAGC\|GTAGC
32	195	Improved	GTAGC\|GTAGC
33	197	Improved	GTAGC\|GTAGC
34	J22	Landrace	GTAGC\|GTAGC
35	J26	Landrace	GTAGC\|GTAGC
36	J5	Landrace	GTAGC\|GTAGC
37	J50	Landrace	GTAGC\|GTAGC
38	2001	Landrace	GTAGC\|GTAGC
39	2005	Improved	GTAGC\|GTAGC
40	2008	Improved	N\|N
41	2009	Landrace	GTAGC\|GTAGC
42	201	Improved	GTAGC\|GTAGC
43	2010	Landrace	GTAGC\|GTAGC
44	2016	Improved	GTAGC\|GTAGC
45	2019	Improved	GTAGC\|GTAGC
46	202	Improved	GTAGC\|GTAGC
47	2021	Improved	GTAGC\|GTAGC
48	2023	Improved	GTAGC\|GTAGC
49	2026	Improved	GTAGC\|GTAGC
50	2029	Improved	GTAGC\|GTAGC
51	2030	Landrace	GTAGC\|GTAGC
52	2031	Landrace	GTAGC\|GTAGC
53	2036	Improved	GTAGC\|GTAGC
54	2037	Improved	GTAGC\|GTAGC
55	2038	Improved	GTAGC\|GTAGC
56	2039	Improved	GTAGC\|GTAGC
57	204	Improved	GTAGC\|GTAGC
58	2042	Improved	GTAGC\|GTAGC
59	2043	Improved	GTAGC\|GTAGC
60	2048	Improved	GTAGC\|GTAGC
61	2049	Improved	GTAGC\|GTAGC
62	205	Improved	GTAGC\|GTAGC
63	2050	Improved	GTAGC\|GTAGC
64	2052	Improved	GTAGC\|GTAGC
65	2054	Improved	GTAGC\|GTAGC
66	2056	Improved	GTAGC\|GTAGC
67	2059	Improved	GTAGC\|GTAGC
68	206	Improved	GTAGC\|GTAGC
69	2064	Improved	GTAGC\|GTAGC
70	2065	Improved	GTAGC\|GTAGC
71	2067	Improved	GTAGC\|GTAGC
72	2068	Improved	GTAGC\|GTAGC
73	2069	Improved	GTAGC\|GTAGC
74	2071	Improved	GTAGC\|GTAGC
75	2074	Improved	GTAGC\|GTAGC
76	2075	Improved	GTAGC\|GTAGC
77	2076	Improved	GTAGC\|GTAGC
78	2080	Improved	GTAGC\|GTAGC
79	2081	Improved	GTAGC\|GTAGC
80	2082	Improved	GTAGC\|GTAGC
81	2086	Improved	GTAGC\|GTAGC
82	2088	Improved	GTAGC\|GTAGC
83	260	Wild sorghum	GTAGC\|GTAGC
84	261	Improved	GTAGC\|GTAGC
85	262	Improved	GTAGC\|GTAGC
86	263	Improved	GTAGC\|GTAGC
87	286	Improved	GTAGC\|GTAGC
88	29	Improved	GTAGC\|GTAGC
89	3	Improved	GTAGC\|GTAGC
90	302546	S.propinquum	GTAGC\|GTAGC
91	31	Improved	GTAGC\|GTAGC
92	32	Improved	GTAGC\|GTAGC
93	34	Improved	GTAGC\|GTAGC
94	346	Landrace	GTAGC\|GTAGC
95	348	Wild sorghum	GTAGC\|GTAGC
96	353	Wild sorghum	GTAGC\|GTAGC
97	355	Wild sorghum	GTAGC\|GTAGC
98	357	Wild sorghum	GTAGC\|GTAGC
99	364	Wild sorghum	GTAGC\|GTAGC
100	367	Landrace	GTAGC\|GTAGC
101	s37	S.propinquum	GTAGC\|GTAGC
102	s38	S.propinquum	GTAGC\|GTAGC
103	370	Landrace	GTAGC\|GTAGC
104	377	Wild sorghum	GTAGC\|GTAGC
105	392	Wild sorghum	GTAGC\|GTAGC
106	394	Wild sorghum	GTAGC\|GTAGC
107	40	Improved	GTAGC\|GTAGC
108	42	Improved	GTAGC\|GTAGC
109	43	Improved	GTAGC\|GTAGC
110	45	Improved	GTAGC\|GTAGC
111	47	Improved	GTAGC\|GTAGC
112	48	Improved	GTAGC\|GTAGC
113	51	Improved	GTAGC\|GTAGC
114	53	Improved	GTAGC\|GTAGC
115	56	Improved	GTAGC\|GTAGC
116	61	Improved	GTAGC\|GTAGC
117	62	Improved	GTAGC\|GTAGC
118	66	Landrace	GTAGC\|GTAGC
119	67	Improved	GTAGC\|GTAGC
120	68	Improved	GTAGC\|GTAGC
121	70	Improved	GTAGC\|GTAGC
122	73	Improved	GTAGC\|GTAGC
123	75	Improved	GTAGC\|GTAGC
124	88	Improved	GTAGC\|GTAGC
125	89	Improved	GTAGC\|GTAGC
126	91	Improved	GTAGC\|GTAGC
127	92	Improved	GTAGC\|GTAGC
128	93	Improved	GTAGC\|GTAGC
129	94	Improved	N\|N
130	95	Improved	GTAGC\|GTAGC
131	96	Improved	GTAGC\|GTAGC
132	97	Improved	GTAGC\|GTAGC
133	s1	Improved	GTAGC\|GTAGC
134	s36	Wild sorghum	GTAGC\|GTAGC
135	s2	Landrace	GTAGC\|GTAGC
136	s3	Improved	GTAGC\|GTAGC
137	s32	Improved	GTAGC\|GTAGC
138	s43	Weedy	GTAGC\|GTAGC
139	s40	Landrace	N\|N
140	s41	Weedy	GTAGC\|GTAGC
141	s39	Landrace	GTAGC\|GTAGC
142	s42	Landrace	GTAGC\|GTAGC
143	s47	Improved	GTAGC\|GTAGC
144	s5	Landrace	GTAGC\|GTAGC
145	GW102	Landrace	GTAGC\|GTAGC
146	GW103	Landrace	GTAGC\|GTAGC
147	GW104	Landrace	GTAGC\|GTAGC
148	GW105	Landrace	GTAGC\|GTAGC
149	GW16	Landrace	GTAGC\|GTAGC
150	GW2	Landrace	GTAGC\|GTAGC
151	GW34	Landrace	GTAGC\|GTAGC
152	GW37	Landrace	GTAGC\|GTAGC
153	GW58	Landrace	GTAGC\|GTAGC
154	GW59	Landrace	GTAGC\|GTAGC
155	GW9	Landrace	GTAGC\|GTAGC
156	s4	Weedy	GTAGC\|GTAGC
157	s6	Improved	GTAGC\|GTAGC
158	s7	Landrace	GTAGC\|GTAGC
159	s8	Landrace	GTAGC\|GTAGC
160	s9	Landrace	GTAGC\|GTAGC
161	J101	Landrace	GTAGC\|GTAGC
162	J103	Improved	GTAGC\|GTAGC
163	J112	Landrace	GTAGC\|GTAGC
164	J113	Improved	GTAGC\|GTAGC
165	J129	Improved	GTAGC\|GTAGC
166	J130	Improved	GTAGC\|GTAGC
167	J136	Improved	GTAGC\|GTAGC
168	J152	Improved	GTAGC\|GTAGC
169	J2	Landrace	GTAGC\|GTAGC
170	J20	Landrace	GTAGC\|GTAGC
171	J4	Landrace	N\|N
172	J42	Landrace	GTAGC\|GTAGC
173	J44	Landrace	GTAGC\|GTAGC
174	J49	Landrace	GTAGC\|GTAGC
175	J52	Landrace	GTAGC\|GTAGC
176	J53	Landrace	GTAGC\|GTAGC
177	J54	Landrace	GTAGC\|GTAGC
178	J57	Landrace	GTAGC\|GTAGC
179	J59	Landrace	GTAGC\|GTAGC
180	J64	Landrace	N\|N
181	J66	Landrace	GTAGC\|GTAGC
182	J67	Landrace	GTAGC\|GTAGC
183	J69	Landrace	GTAGC\|GTAGC
184	J87	Landrace	GTAGC\|GTAGC
185	J99	Landrace	GTAGC\|GTAGC
186	s45	Landrace	GTAGC\|GTAGC
187	s11	Improved	GTAGC\|GTAGC
188	s10	Improved	GTAGC\|GTAGC
189	s46	Improved	GTAGC\|GTAGC
190	s12	Improved	GTAGC\|GTAGC
191	s13	Landrace	GTAGC\|GTAGC
192	MHMD	Landrace	N\|N
193	s14	Improved	GTAGC\|GTAGC
194	s15	Improved	GTAGC\|GTAGC
195	s34	Weedy	GTAGC\|GTAGC
196	s33	Wild sorghum	GTAGC\|GTAGC
197	s21	Wild sorghum	GTAGC\|GTAGC
198	s16	Wild sorghum	GTAGC\|GTAGC
199	s44	Improved	GTAGC\|GTAGC
200	s35	Landrace	GTAGC\|GTAGC
201	s31	Wild sorghum	GTAGC\|GTAGC
202	s17	Improved	GTAGC\|GTAGC
203	s18	Improved	GTAGC\|GTAGC
204	s20	Improved	GTAGC\|GTAGC
205	s19	Improved	GTAGC\|GTAGC
206	s22	Landrace	GTAGC\|GTAGC
207	s23	Landrace	GTAGC\|GTAGC
208	s24	Landrace	GTAGC\|GTAGC
209	s25	Landrace	GTAGC\|GTAGC
210	s26	Landrace	GTAGC\|GTAGC
211	s27	Landrace	GTAGC\|GTAGC
212	s28	Landrace	GTAGC\|GTAGC
213	s29	Landrace	GTAGC\|GTAGC
214	s30	Landrace	GTAGC\|GTAGC
215	SL25	Wild sorghum	G\|G
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	GTAGC\|GTAGC
218	SL109	Wild sorghum	GTAGC\|GTAGC
219	SL12	Wild sorghum	GTAGC\|GTAGC
220	SL129	Wild sorghum	GTAGC\|GTAGC
221	SL130	Wild sorghum	GTAGC\|GTAGC
222	SL135	Wild sorghum	GTAGC\|GTAGC
223	SL136	Wild sorghum	GTAGC\|GTAGC
224	SL137	Wild sorghum	GTAGC\|GTAGC
225	SL138	Wild sorghum	GTAGC\|GTAGC
226	SL140	Wild sorghum	GTAGC\|GTAGC
227	SL141	Wild sorghum	N\|N
228	SL19	Wild sorghum	GTAGC\|GTAGC
229	SL28	Wild sorghum	GTAGC\|GTAGC
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	GTAGC\|GTAGC
232	SL36	Wild sorghum	GTAGC\|GTAGC
233	SL37	Wild sorghum	GTAGC\|GTAGC
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	GTAGC\|GTAGC
236	SL43	Wild sorghum	GTAGC\|GTAGC
237	SL47	Wild sorghum	GTAGC\|GTAGC
238	SL49	Wild sorghum	GTAGC\|GTAGC
239	SL51	Wild sorghum	GTAGC\|GTAGC
240	SL53	Wild sorghum	GTAGC\|GTAGC
241	SL62	Wild sorghum	GTAGC\|GTAGC
242	SL83	Wild sorghum	GTAGC\|GTAGC
243	SL97	Landrace	GTAGC\|GTAGC
244	s48	Improved	GTAGC\|GTAGC
245	Tu13	Wild sorghum	GTAGC\|GTAGC
246	Tu14	Wild sorghum	GTAGC\|GTAGC
247	Tu30	Wild sorghum	GTAGC\|GTAGC
248	Tu5	Wild sorghum	GTAGC\|GTAGC
249	WSC5	Landrace	GTAGC\|GTAGC
250	WSC15	Landrace	GTAGC\|GTAGC
251	WSC19	Landrace	GTAGC\|GTAGC
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	GTAGC\|GTAGC
254	WSC6	Landrace	GTAGC\|GTAGC
255	WSC61	Landrace	GTAGC\|GTAGC
256	WSC71	Improved	GTAGC\|GTAGC
257	WSC72	Landrace	GTAGC\|GTAGC
258	WSC79	Landrace	GTAGC\|GTAGC
259	WSC94	Landrace	GTAGC\|GTAGC
260	WSC99	Landrace	GTAGC\|GTAGC
261	WSC100	Landrace	GTAGC\|GTAGC
262	WSC104	Landrace	GTAGC\|GTAGC
263	WSC105	Landrace	GTAGC\|GTAGC
264	WSC12	Landrace	GTAGC\|GTAGC
265	WSC13	Landrace	GTAGC\|GTAGC
266	WSC16	Landrace	GTAGC\|GTAGC
267	WSC17	Landrace	GTAGC\|GTAGC
268	WSC18	Landrace	N\|N
269	WSC20	Landrace	GTAGC\|GTAGC
270	WSC24	Landrace	GTAGC\|GTAGC
271	WSC25	Landrace	GTAGC\|GTAGC
272	WSC29	Landrace	GTAGC\|GTAGC
273	WSC31	Landrace	GTAGC\|GTAGC
274	WSC32	Landrace	GTAGC\|GTAGC
275	WSC34	Landrace	GTAGC\|GTAGC
276	WSC38	Landrace	GTAGC\|GTAGC
277	WSC39	Improved	GTAGC\|GTAGC
278	WSC40	Landrace	GTAGC\|GTAGC
279	WSC54	Landrace	GTAGC\|GTAGC
280	WSC56	Landrace	GTAGC\|GTAGC
281	WSC59	Landrace	GTAGC\|GTAGC
282	WSC68	Landrace	GTAGC\|GTAGC
283	WSC70	Landrace	GTAGC\|GTAGC
284	WSC73	Landrace	GTAGC\|GTAGC
285	WSC81	Landrace	GTAGC\|GTAGC
286	WSC85	Improved	GTAGC\|GTAGC
287	WSC91	Landrace	GTAGC\|GTAGC
288	WSC93	Landrace	GTAGC\|GTAGC
289	WSC98	Landrace	GTAGC\|GTAGC

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825437	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825437	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825437	Sobic.001G000300	downstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825437	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825437	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825437	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825437	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser