sorgsd

Variation ID : sbi33825447

Variation Detail

Variation ID	sbi33825447
Type	INDEL
Position	Chr01 21053-21060
Ref /Alleles	TCTATTAC/ T
MAF	T: 0.008
5' Flank	TATTTGTTTATATTGCAACAAACGAAAAGG
3' Flank	AGTAGAGTTGGTGAGCCTGTGATGCTACAC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	TCTATTAC\|TCTATTAC
2	103	Improved	TCTATTAC\|TCTATTAC
3	107	Improved	TCTATTAC\|TCTATTAC
4	11	Improved	TCTATTAC\|TCTATTAC
5	110	Improved	TCTATTAC\|TCTATTAC
6	123	Landrace	TCTATTAC\|TCTATTAC
7	131	Improved	TCTATTAC\|TCTATTAC
8	132	Improved	TCTATTAC\|TCTATTAC
9	135	Improved	TCTATTAC\|TCTATTAC
10	137	Improved	TCTATTAC\|TCTATTAC
11	138	Improved	TCTATTAC\|TCTATTAC
12	14	Improved	TCTATTAC\|TCTATTAC
13	140	Improved	TCTATTAC\|TCTATTAC
14	141	Improved	N\|N
15	144	Improved	TCTATTAC\|TCTATTAC
16	150	Improved	TCTATTAC\|TCTATTAC
17	154	Improved	TCTATTAC\|TCTATTAC
18	159	Landrace	TCTATTAC\|TCTATTAC
19	16	Improved	TCTATTAC\|TCTATTAC
20	161	Landrace	TCTATTAC\|TCTATTAC
21	167	Improved	TCTATTAC\|TCTATTAC
22	168	Improved	TCTATTAC\|TCTATTAC
23	170	Improved	TCTATTAC\|TCTATTAC
24	173	Improved	TCTATTAC\|TCTATTAC
25	175	Improved	TCTATTAC\|TCTATTAC
26	176	Improved	TCTATTAC\|TCTATTAC
27	182	Landrace	TCTATTAC\|TCTATTAC
28	186	Improved	TCTATTAC\|TCTATTAC
29	190	Improved	TCTATTAC\|TCTATTAC
30	192	Improved	TCTATTAC\|TCTATTAC
31	194	Improved	TCTATTAC\|TCTATTAC
32	195	Improved	TCTATTAC\|TCTATTAC
33	197	Improved	TCTATTAC\|TCTATTAC
34	J22	Landrace	TCTATTAC\|TCTATTAC
35	J26	Landrace	TCTATTAC\|TCTATTAC
36	J5	Landrace	TCTATTAC\|TCTATTAC
37	J50	Landrace	TCTATTAC\|TCTATTAC
38	2001	Landrace	TCTATTAC\|TCTATTAC
39	2005	Improved	TCTATTAC\|TCTATTAC
40	2008	Improved	TCTATTAC\|TCTATTAC
41	2009	Landrace	N\|N
42	201	Improved	TCTATTAC\|TCTATTAC
43	2010	Landrace	TCTATTAC\|TCTATTAC
44	2016	Improved	TCTATTAC\|TCTATTAC
45	2019	Improved	TCTATTAC\|TCTATTAC
46	202	Improved	TCTATTAC\|TCTATTAC
47	2021	Improved	TCTATTAC\|TCTATTAC
48	2023	Improved	TCTATTAC\|TCTATTAC
49	2026	Improved	TCTATTAC\|TCTATTAC
50	2029	Improved	TCTATTAC\|TCTATTAC
51	2030	Landrace	TCTATTAC\|TCTATTAC
52	2031	Landrace	N\|N
53	2036	Improved	TCTATTAC\|TCTATTAC
54	2037	Improved	TCTATTAC\|TCTATTAC
55	2038	Improved	N\|N
56	2039	Improved	TCTATTAC\|TCTATTAC
57	204	Improved	TCTATTAC\|TCTATTAC
58	2042	Improved	TCTATTAC\|TCTATTAC
59	2043	Improved	TCTATTAC\|TCTATTAC
60	2048	Improved	TCTATTAC\|TCTATTAC
61	2049	Improved	TCTATTAC\|TCTATTAC
62	205	Improved	N\|N
63	2050	Improved	TCTATTAC\|TCTATTAC
64	2052	Improved	TCTATTAC\|TCTATTAC
65	2054	Improved	TCTATTAC\|TCTATTAC
66	2056	Improved	N\|N
67	2059	Improved	TCTATTAC\|TCTATTAC
68	206	Improved	TCTATTAC\|TCTATTAC
69	2064	Improved	TCTATTAC\|TCTATTAC
70	2065	Improved	TCTATTAC\|TCTATTAC
71	2067	Improved	TCTATTAC\|TCTATTAC
72	2068	Improved	TCTATTAC\|TCTATTAC
73	2069	Improved	TCTATTAC\|TCTATTAC
74	2071	Improved	TCTATTAC\|TCTATTAC
75	2074	Improved	TCTATTAC\|TCTATTAC
76	2075	Improved	TCTATTAC\|TCTATTAC
77	2076	Improved	TCTATTAC\|TCTATTAC
78	2080	Improved	TCTATTAC\|TCTATTAC
79	2081	Improved	TCTATTAC\|TCTATTAC
80	2082	Improved	TCTATTAC\|TCTATTAC
81	2086	Improved	TCTATTAC\|TCTATTAC
82	2088	Improved	TCTATTAC\|TCTATTAC
83	260	Wild sorghum	TCTATTAC\|TCTATTAC
84	261	Improved	N\|N
85	262	Improved	TCTATTAC\|TCTATTAC
86	263	Improved	TCTATTAC\|TCTATTAC
87	286	Improved	TCTATTAC\|TCTATTAC
88	29	Improved	TCTATTAC\|TCTATTAC
89	3	Improved	TCTATTAC\|TCTATTAC
90	302546	S.propinquum	N\|N
91	31	Improved	TCTATTAC\|TCTATTAC
92	32	Improved	TCTATTAC\|TCTATTAC
93	34	Improved	TCTATTAC\|TCTATTAC
94	346	Landrace	TCTATTAC\|TCTATTAC
95	348	Wild sorghum	TCTATTAC\|TCTATTAC
96	353	Wild sorghum	TCTATTAC\|TCTATTAC
97	355	Wild sorghum	TCTATTAC\|TCTATTAC
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	TCTATTAC\|TCTATTAC
100	367	Landrace	N\|N
101	s37	S.propinquum	T\|T
102	s38	S.propinquum	T\|T
103	370	Landrace	TCTATTAC\|TCTATTAC
104	377	Wild sorghum	TCTATTAC\|TCTATTAC
105	392	Wild sorghum	TCTATTAC\|TCTATTAC
106	394	Wild sorghum	TCTATTAC\|TCTATTAC
107	40	Improved	TCTATTAC\|TCTATTAC
108	42	Improved	TCTATTAC\|TCTATTAC
109	43	Improved	N\|N
110	45	Improved	TCTATTAC\|TCTATTAC
111	47	Improved	TCTATTAC\|TCTATTAC
112	48	Improved	TCTATTAC\|TCTATTAC
113	51	Improved	TCTATTAC\|TCTATTAC
114	53	Improved	TCTATTAC\|TCTATTAC
115	56	Improved	TCTATTAC\|TCTATTAC
116	61	Improved	TCTATTAC\|TCTATTAC
117	62	Improved	TCTATTAC\|TCTATTAC
118	66	Landrace	TCTATTAC\|TCTATTAC
119	67	Improved	TCTATTAC\|TCTATTAC
120	68	Improved	TCTATTAC\|TCTATTAC
121	70	Improved	TCTATTAC\|TCTATTAC
122	73	Improved	TCTATTAC\|TCTATTAC
123	75	Improved	TCTATTAC\|TCTATTAC
124	88	Improved	TCTATTAC\|TCTATTAC
125	89	Improved	N\|N
126	91	Improved	TCTATTAC\|TCTATTAC
127	92	Improved	TCTATTAC\|TCTATTAC
128	93	Improved	TCTATTAC\|TCTATTAC
129	94	Improved	TCTATTAC\|TCTATTAC
130	95	Improved	N\|N
131	96	Improved	TCTATTAC\|TCTATTAC
132	97	Improved	TCTATTAC\|TCTATTAC
133	s1	Improved	TCTATTAC\|TCTATTAC
134	s36	Wild sorghum	TCTATTAC\|TCTATTAC
135	s2	Landrace	TCTATTAC\|TCTATTAC
136	s3	Improved	TCTATTAC\|TCTATTAC
137	s32	Improved	TCTATTAC\|TCTATTAC
138	s43	Weedy	TCTATTAC\|TCTATTAC
139	s40	Landrace	TCTATTAC\|TCTATTAC
140	s41	Weedy	TCTATTAC\|TCTATTAC
141	s39	Landrace	TCTATTAC\|TCTATTAC
142	s42	Landrace	TCTATTAC\|TCTATTAC
143	s47	Improved	TCTATTAC\|TCTATTAC
144	s5	Landrace	TCTATTAC\|TCTATTAC
145	GW102	Landrace	TCTATTAC\|TCTATTAC
146	GW103	Landrace	TCTATTAC\|TCTATTAC
147	GW104	Landrace	TCTATTAC\|TCTATTAC
148	GW105	Landrace	TCTATTAC\|TCTATTAC
149	GW16	Landrace	TCTATTAC\|TCTATTAC
150	GW2	Landrace	TCTATTAC\|TCTATTAC
151	GW34	Landrace	TCTATTAC\|TCTATTAC
152	GW37	Landrace	TCTATTAC\|TCTATTAC
153	GW58	Landrace	TCTATTAC\|TCTATTAC
154	GW59	Landrace	TCTATTAC\|TCTATTAC
155	GW9	Landrace	TCTATTAC\|TCTATTAC
156	s4	Weedy	TCTATTAC\|TCTATTAC
157	s6	Improved	TCTATTAC\|TCTATTAC
158	s7	Landrace	TCTATTAC\|TCTATTAC
159	s8	Landrace	TCTATTAC\|TCTATTAC
160	s9	Landrace	TCTATTAC\|TCTATTAC
161	J101	Landrace	TCTATTAC\|TCTATTAC
162	J103	Improved	TCTATTAC\|TCTATTAC
163	J112	Landrace	TCTATTAC\|TCTATTAC
164	J113	Improved	TCTATTAC\|TCTATTAC
165	J129	Improved	TCTATTAC\|TCTATTAC
166	J130	Improved	TCTATTAC\|TCTATTAC
167	J136	Improved	TCTATTAC\|TCTATTAC
168	J152	Improved	TCTATTAC\|TCTATTAC
169	J2	Landrace	TCTATTAC\|TCTATTAC
170	J20	Landrace	TCTATTAC\|TCTATTAC
171	J4	Landrace	TCTATTAC\|TCTATTAC
172	J42	Landrace	TCTATTAC\|TCTATTAC
173	J44	Landrace	N\|N
174	J49	Landrace	TCTATTAC\|TCTATTAC
175	J52	Landrace	TCTATTAC\|TCTATTAC
176	J53	Landrace	N\|N
177	J54	Landrace	TCTATTAC\|TCTATTAC
178	J57	Landrace	TCTATTAC\|TCTATTAC
179	J59	Landrace	TCTATTAC\|TCTATTAC
180	J64	Landrace	TCTATTAC\|TCTATTAC
181	J66	Landrace	TCTATTAC\|TCTATTAC
182	J67	Landrace	TCTATTAC\|TCTATTAC
183	J69	Landrace	TCTATTAC\|TCTATTAC
184	J87	Landrace	TCTATTAC\|TCTATTAC
185	J99	Landrace	TCTATTAC\|TCTATTAC
186	s45	Landrace	TCTATTAC\|TCTATTAC
187	s11	Improved	TCTATTAC\|TCTATTAC
188	s10	Improved	TCTATTAC\|TCTATTAC
189	s46	Improved	TCTATTAC\|TCTATTAC
190	s12	Improved	TCTATTAC\|TCTATTAC
191	s13	Landrace	TCTATTAC\|TCTATTAC
192	MHMD	Landrace	TCTATTAC\|TCTATTAC
193	s14	Improved	TCTATTAC\|TCTATTAC
194	s15	Improved	TCTATTAC\|TCTATTAC
195	s34	Weedy	TCTATTAC\|TCTATTAC
196	s33	Wild sorghum	TCTATTAC\|TCTATTAC
197	s21	Wild sorghum	TCTATTAC\|TCTATTAC
198	s16	Wild sorghum	TCTATTAC\|TCTATTAC
199	s44	Improved	TCTATTAC\|TCTATTAC
200	s35	Landrace	TCTATTAC\|TCTATTAC
201	s31	Wild sorghum	TCTATTAC\|TCTATTAC
202	s17	Improved	TCTATTAC\|TCTATTAC
203	s18	Improved	TCTATTAC\|TCTATTAC
204	s20	Improved	TCTATTAC\|TCTATTAC
205	s19	Improved	TCTATTAC\|TCTATTAC
206	s22	Landrace	TCTATTAC\|TCTATTAC
207	s23	Landrace	TCTATTAC\|TCTATTAC
208	s24	Landrace	TCTATTAC\|TCTATTAC
209	s25	Landrace	TCTATTAC\|TCTATTAC
210	s26	Landrace	TCTATTAC\|TCTATTAC
211	s27	Landrace	TCTATTAC\|TCTATTAC
212	s28	Landrace	TCTATTAC\|TCTATTAC
213	s29	Landrace	TCTATTAC\|TCTATTAC
214	s30	Landrace	TCTATTAC\|TCTATTAC
215	SL25	Wild sorghum	TCTATTAC\|TCTATTAC
216	SL105	Wild sorghum	TCTATTAC\|TCTATTAC
217	SL108	Wild sorghum	TCTATTAC\|TCTATTAC
218	SL109	Wild sorghum	TCTATTAC\|TCTATTAC
219	SL12	Wild sorghum	N\|N
220	SL129	Wild sorghum	TCTATTAC\|TCTATTAC
221	SL130	Wild sorghum	TCTATTAC\|TCTATTAC
222	SL135	Wild sorghum	TCTATTAC\|TCTATTAC
223	SL136	Wild sorghum	TCTATTAC\|TCTATTAC
224	SL137	Wild sorghum	TCTATTAC\|TCTATTAC
225	SL138	Wild sorghum	TCTATTAC\|TCTATTAC
226	SL140	Wild sorghum	TCTATTAC\|TCTATTAC
227	SL141	Wild sorghum	TCTATTAC\|TCTATTAC
228	SL19	Wild sorghum	TCTATTAC\|TCTATTAC
229	SL28	Wild sorghum	N\|N
230	SL32	Wild sorghum	TCTATTAC\|TCTATTAC
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	N\|N
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	TCTATTAC\|TCTATTAC
235	SL41	Wild sorghum	TCTATTAC\|TCTATTAC
236	SL43	Wild sorghum	TCTATTAC\|TCTATTAC
237	SL47	Wild sorghum	TCTATTAC\|TCTATTAC
238	SL49	Wild sorghum	TCTATTAC\|TCTATTAC
239	SL51	Wild sorghum	TCTATTAC\|TCTATTAC
240	SL53	Wild sorghum	TCTATTAC\|TCTATTAC
241	SL62	Wild sorghum	TCTATTAC\|TCTATTAC
242	SL83	Wild sorghum	TCTATTAC\|TCTATTAC
243	SL97	Landrace	N\|N
244	s48	Improved	TCTATTAC\|TCTATTAC
245	Tu13	Wild sorghum	TCTATTAC\|TCTATTAC
246	Tu14	Wild sorghum	TCTATTAC\|TCTATTAC
247	Tu30	Wild sorghum	TCTATTAC\|TCTATTAC
248	Tu5	Wild sorghum	TCTATTAC\|TCTATTAC
249	WSC5	Landrace	TCTATTAC\|TCTATTAC
250	WSC15	Landrace	TCTATTAC\|TCTATTAC
251	WSC19	Landrace	N\|N
252	WSC30	Landrace	TCTATTAC\|TCTATTAC
253	WSC52	Landrace	TCTATTAC\|TCTATTAC
254	WSC6	Landrace	TCTATTAC\|TCTATTAC
255	WSC61	Landrace	TCTATTAC\|TCTATTAC
256	WSC71	Improved	TCTATTAC\|TCTATTAC
257	WSC72	Landrace	TCTATTAC\|TCTATTAC
258	WSC79	Landrace	TCTATTAC\|TCTATTAC
259	WSC94	Landrace	TCTATTAC\|TCTATTAC
260	WSC99	Landrace	TCTATTAC\|TCTATTAC
261	WSC100	Landrace	TCTATTAC\|TCTATTAC
262	WSC104	Landrace	TCTATTAC\|TCTATTAC
263	WSC105	Landrace	TCTATTAC\|TCTATTAC
264	WSC12	Landrace	TCTATTAC\|TCTATTAC
265	WSC13	Landrace	TCTATTAC\|TCTATTAC
266	WSC16	Landrace	TCTATTAC\|TCTATTAC
267	WSC17	Landrace	TCTATTAC\|TCTATTAC
268	WSC18	Landrace	TCTATTAC\|TCTATTAC
269	WSC20	Landrace	TCTATTAC\|TCTATTAC
270	WSC24	Landrace	TCTATTAC\|TCTATTAC
271	WSC25	Landrace	TCTATTAC\|TCTATTAC
272	WSC29	Landrace	TCTATTAC\|TCTATTAC
273	WSC31	Landrace	TCTATTAC\|TCTATTAC
274	WSC32	Landrace	TCTATTAC\|TCTATTAC
275	WSC34	Landrace	TCTATTAC\|TCTATTAC
276	WSC38	Landrace	TCTATTAC\|TCTATTAC
277	WSC39	Improved	N\|N
278	WSC40	Landrace	TCTATTAC\|TCTATTAC
279	WSC54	Landrace	TCTATTAC\|TCTATTAC
280	WSC56	Landrace	TCTATTAC\|TCTATTAC
281	WSC59	Landrace	TCTATTAC\|TCTATTAC
282	WSC68	Landrace	TCTATTAC\|TCTATTAC
283	WSC70	Landrace	TCTATTAC\|TCTATTAC
284	WSC73	Landrace	TCTATTAC\|TCTATTAC
285	WSC81	Landrace	TCTATTAC\|TCTATTAC
286	WSC85	Improved	TCTATTAC\|TCTATTAC
287	WSC91	Landrace	TCTATTAC\|TCTATTAC
288	WSC93	Landrace	TCTATTAC\|TCTATTAC
289	WSC98	Landrace	TCTATTAC\|TCTATTAC

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825447	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825447	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825447	Sobic.001G000300	downstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825447	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825447	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825447	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825447	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser