Variation ID : sbi33825449

Variation Detail



Variation ID sbi33825449
Type INDEL
Position Chr01 21089-21091
Ref /Alleles ACC/ A
MAF A: 0.019
5' Flank ACAGTAGAGTTGGTGAGCCTGTGATGCTAC
3' Flank ATATGTGACTGTGTTAATTTCATAAACTTT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved ACC|ACC
2 103 Improved ACC|ACC
3 107 Improved ACC|ACC
4 11 Improved ACC|ACC
5 110 Improved ACC|ACC
6 123 Landrace ACC|ACC
7 131 Improved ACC|ACC
8 132 Improved ACC|ACC
9 135 Improved ACC|ACC
10 137 Improved ACC|ACC
11 138 Improved ACC|ACC
12 14 Improved ACC|ACC
13 140 Improved N|N
14 141 Improved N|N
15 144 Improved ACC|ACC
16 150 Improved ACC|ACC
17 154 Improved ACC|ACC
18 159 Landrace ACC|ACC
19 16 Improved ACC|ACC
20 161 Landrace ACC|ACC
21 167 Improved ACC|ACC
22 168 Improved ACC|ACC
23 170 Improved ACC|ACC
24 173 Improved ACC|ACC
25 175 Improved ACC|ACC
26 176 Improved ACC|ACC
27 182 Landrace ACC|ACC
28 186 Improved ACC|ACC
29 190 Improved ACC|ACC
30 192 Improved ACC|ACC
31 194 Improved ACC|ACC
32 195 Improved ACC|ACC
33 197 Improved ACC|ACC
34 J22 Landrace ACC|ACC
35 J26 Landrace ACC|ACC
36 J5 Landrace ACC|ACC
37 J50 Landrace ACC|ACC
38 2001 Landrace ACC|ACC
39 2005 Improved ACC|ACC
40 2008 Improved ACC|ACC
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace ACC|ACC
44 2016 Improved ACC|ACC
45 2019 Improved ACC|ACC
46 202 Improved ACC|ACC
47 2021 Improved ACC|ACC
48 2023 Improved ACC|ACC
49 2026 Improved ACC|ACC
50 2029 Improved ACC|ACC
51 2030 Landrace ACC|ACC
52 2031 Landrace N|N
53 2036 Improved ACC|ACC
54 2037 Improved ACC|ACC
55 2038 Improved N|N
56 2039 Improved ACC|ACC
57 204 Improved ACC|ACC
58 2042 Improved ACC|ACC
59 2043 Improved ACC|ACC
60 2048 Improved ACC|ACC
61 2049 Improved ACC|ACC
62 205 Improved N|N
63 2050 Improved ACC|ACC
64 2052 Improved ACC|ACC
65 2054 Improved ACC|ACC
66 2056 Improved N|N
67 2059 Improved ACC|ACC
68 206 Improved ACC|ACC
69 2064 Improved ACC|ACC
70 2065 Improved ACC|ACC
71 2067 Improved ACC|ACC
72 2068 Improved ACC|ACC
73 2069 Improved ACC|ACC
74 2071 Improved ACC|ACC
75 2074 Improved ACC|ACC
76 2075 Improved ACC|ACC
77 2076 Improved ACC|ACC
78 2080 Improved ACC|ACC
79 2081 Improved ACC|ACC
80 2082 Improved ACC|ACC
81 2086 Improved ACC|ACC
82 2088 Improved ACC|ACC
83 260 Wild sorghum ACC|ACC
84 261 Improved N|N
85 262 Improved ACC|ACC
86 263 Improved ACC|ACC
87 286 Improved ACC|ACC
88 29 Improved ACC|ACC
89 3 Improved ACC|ACC
90 302546 S.propinquum ACC|ACC
91 31 Improved ACC|ACC
92 32 Improved ACC|ACC
93 34 Improved N|N
94 346 Landrace ACC|ACC
95 348 Wild sorghum ACC|ACC
96 353 Wild sorghum ACC|ACC
97 355 Wild sorghum ACC|ACC
98 357 Wild sorghum N|N
99 364 Wild sorghum N|N
100 367 Landrace N|N
101 s37 S.propinquum ACC|ACC
102 s38 S.propinquum ACC|ACC
103 370 Landrace ACC|ACC
104 377 Wild sorghum ACC|ACC
105 392 Wild sorghum ACC|ACC
106 394 Wild sorghum ACC|ACC
107 40 Improved ACC|ACC
108 42 Improved ACC|ACC
109 43 Improved ACC|ACC
110 45 Improved ACC|ACC
111 47 Improved ACC|ACC
112 48 Improved ACC|ACC
113 51 Improved ACC|ACC
114 53 Improved ACC|ACC
115 56 Improved ACC|ACC
116 61 Improved ACC|ACC
117 62 Improved ACC|ACC
118 66 Landrace ACC|ACC
119 67 Improved ACC|ACC
120 68 Improved ACC|ACC
121 70 Improved ACC|ACC
122 73 Improved ACC|ACC
123 75 Improved ACC|ACC
124 88 Improved ACC|ACC
125 89 Improved ACC|ACC
126 91 Improved ACC|ACC
127 92 Improved ACC|ACC
128 93 Improved ACC|ACC
129 94 Improved ACC|ACC
130 95 Improved N|N
131 96 Improved ACC|ACC
132 97 Improved N|N
133 s1 Improved ACC|ACC
134 s36 Wild sorghum ACC|ACC
135 s2 Landrace ACC|ACC
136 s3 Improved ACC|ACC
137 s32 Improved ACC|ACC
138 s43 Weedy ACC|ACC
139 s40 Landrace A|A
140 s41 Weedy A|A
141 s39 Landrace ACC|ACC
142 s42 Landrace ACC|ACC
143 s47 Improved ACC|ACC
144 s5 Landrace ACC|ACC
145 GW102 Landrace ACC|ACC
146 GW103 Landrace ACC|ACC
147 GW104 Landrace ACC|ACC
148 GW105 Landrace ACC|ACC
149 GW16 Landrace ACC|ACC
150 GW2 Landrace ACC|ACC
151 GW34 Landrace ACC|ACC
152 GW37 Landrace ACC|ACC
153 GW58 Landrace ACC|ACC
154 GW59 Landrace ACC|ACC
155 GW9 Landrace ACC|ACC
156 s4 Weedy ACC|ACC
157 s6 Improved ACC|ACC
158 s7 Landrace ACC|ACC
159 s8 Landrace ACC|ACC
160 s9 Landrace ACC|ACC
161 J101 Landrace ACC|ACC
162 J103 Improved N|N
163 J112 Landrace ACC|ACC
164 J113 Improved ACC|ACC
165 J129 Improved ACC|ACC
166 J130 Improved ACC|ACC
167 J136 Improved ACC|ACC
168 J152 Improved ACC|ACC
169 J2 Landrace ACC|ACC
170 J20 Landrace ACC|ACC
171 J4 Landrace ACC|ACC
172 J42 Landrace ACC|ACC
173 J44 Landrace N|N
174 J49 Landrace ACC|ACC
175 J52 Landrace ACC|ACC
176 J53 Landrace ACC|ACC
177 J54 Landrace ACC|ACC
178 J57 Landrace ACC|ACC
179 J59 Landrace ACC|ACC
180 J64 Landrace ACC|ACC
181 J66 Landrace ACC|ACC
182 J67 Landrace ACC|ACC
183 J69 Landrace ACC|ACC
184 J87 Landrace ACC|ACC
185 J99 Landrace ACC|ACC
186 s45 Landrace ACC|ACC
187 s11 Improved ACC|ACC
188 s10 Improved ACC|ACC
189 s46 Improved ACC|ACC
190 s12 Improved ACC|ACC
191 s13 Landrace ACC|ACC
192 MHMD Landrace ACC|ACC
193 s14 Improved ACC|ACC
194 s15 Improved ACC|ACC
195 s34 Weedy ACC|ACC
196 s33 Wild sorghum ACC|ACC
197 s21 Wild sorghum ACC|ACC
198 s16 Wild sorghum ACC|ACC
199 s44 Improved ACC|ACC
200 s35 Landrace ACC|ACC
201 s31 Wild sorghum ACC|ACC
202 s17 Improved ACC|ACC
203 s18 Improved ACC|ACC
204 s20 Improved ACC|ACC
205 s19 Improved ACC|ACC
206 s22 Landrace ACC|ACC
207 s23 Landrace ACC|ACC
208 s24 Landrace ACC|ACC
209 s25 Landrace ACC|ACC
210 s26 Landrace ACC|ACC
211 s27 Landrace ACC|ACC
212 s28 Landrace ACC|ACC
213 s29 Landrace ACC|ACC
214 s30 Landrace ACC|ACC
215 SL25 Wild sorghum ACC|ACC
216 SL105 Wild sorghum ACC|ACC
217 SL108 Wild sorghum ACC|ACC
218 SL109 Wild sorghum ACC|ACC
219 SL12 Wild sorghum ACC|ACC
220 SL129 Wild sorghum ACC|ACC
221 SL130 Wild sorghum ACC|ACC
222 SL135 Wild sorghum ACC|ACC
223 SL136 Wild sorghum ACC|ACC
224 SL137 Wild sorghum A|A
225 SL138 Wild sorghum ACC|ACC
226 SL140 Wild sorghum ACC|ACC
227 SL141 Wild sorghum ACC|ACC
228 SL19 Wild sorghum ACC|ACC
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum ACC|ACC
231 SL35 Wild sorghum A|A
232 SL36 Wild sorghum ACC|ACC
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum ACC|ACC
235 SL41 Wild sorghum ACC|ACC
236 SL43 Wild sorghum A|A
237 SL47 Wild sorghum ACC|ACC
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum ACC|ACC
240 SL53 Wild sorghum ACC|ACC
241 SL62 Wild sorghum ACC|ACC
242 SL83 Wild sorghum ACC|ACC
243 SL97 Landrace N|N
244 s48 Improved ACC|ACC
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum ACC|ACC
247 Tu30 Wild sorghum ACC|ACC
248 Tu5 Wild sorghum ACC|ACC
249 WSC5 Landrace ACC|ACC
250 WSC15 Landrace ACC|ACC
251 WSC19 Landrace ACC|ACC
252 WSC30 Landrace ACC|ACC
253 WSC52 Landrace ACC|ACC
254 WSC6 Landrace ACC|ACC
255 WSC61 Landrace ACC|ACC
256 WSC71 Improved ACC|ACC
257 WSC72 Landrace ACC|ACC
258 WSC79 Landrace ACC|ACC
259 WSC94 Landrace ACC|ACC
260 WSC99 Landrace ACC|ACC
261 WSC100 Landrace ACC|ACC
262 WSC104 Landrace ACC|ACC
263 WSC105 Landrace ACC|ACC
264 WSC12 Landrace ACC|ACC
265 WSC13 Landrace ACC|ACC
266 WSC16 Landrace ACC|ACC
267 WSC17 Landrace ACC|ACC
268 WSC18 Landrace ACC|ACC
269 WSC20 Landrace N|N
270 WSC24 Landrace ACC|ACC
271 WSC25 Landrace ACC|ACC
272 WSC29 Landrace ACC|ACC
273 WSC31 Landrace ACC|ACC
274 WSC32 Landrace ACC|ACC
275 WSC34 Landrace ACC|ACC
276 WSC38 Landrace ACC|ACC
277 WSC39 Improved N|N
278 WSC40 Landrace ACC|ACC
279 WSC54 Landrace ACC|ACC
280 WSC56 Landrace ACC|ACC
281 WSC59 Landrace ACC|ACC
282 WSC68 Landrace N|N
283 WSC70 Landrace ACC|ACC
284 WSC73 Landrace ACC|ACC
285 WSC81 Landrace ACC|ACC
286 WSC85 Improved ACC|ACC
287 WSC91 Landrace ACC|ACC
288 WSC93 Landrace ACC|ACC
289 WSC98 Landrace ACC|ACC

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825449 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825449 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825449 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825449 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825449 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825449 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825449 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser